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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/aa0a3e9c2e0052f4e87fd2c5d6fd667c36f92503">aa0a3e9c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-26T13:45:03+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/aa0a3e9c2e0052f4e87fd2c5d6fd667c36f92503#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sat, 26 Sep 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sat, 26 Sep 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> dcmtk | 162 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 8<span class="idiff left right">8</span> | {practice,covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 8<span class="idiff left right">7</span> | {practice,covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 47 | {his,laboratory,covid-19,imaging,practice,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">9</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">8</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> htsjdk | 27 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">5</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> gnumed-server | 1<span class="idiff left right">9</span> | {covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> dcm2niix | 1<span class="idiff left right">5</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">5</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> gnumed-server | 1<span class="idiff left right">8</span> | {covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dcm2niix | 1<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> gdcm | 14 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> gdcm | 14 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> ngs-sdk | 14 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> adun.app | 13 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> gdcm | 13 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> invesalius | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> adun.app | 12 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> melting | 11 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> minc-tools | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> dicompyler | 10 | {oncology} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> nifticlib | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> nifticlib | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> nifticlib | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> pixelmed | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> insighttoolkit4 | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> libncl | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> biosig4c++ | 8 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> fastlink | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> insighttoolkit4 | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> king | 8 | {typesetting,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> openslide | 8 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -55,7 +55,6 @@ Last-Update: Sat, 26 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> jellyfish1 | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> mhap | 6 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> nutsqlite | 6 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> obitools | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> paraclu | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> perm | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> piler | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -82,6 +81,7 @@ Last-Update: Sat, 26 Sep 2020 01:42:04 +0000</td>
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81
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> metaphlan2 | 5 | {bio} | </span>
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82
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> microbegps | 5 | {bio} | </span>
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83
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> neobio | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"> obitools | 5 | {bio} | </span>
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85
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> orthanc-dicomweb | 5 | {covid-19,imaging} | </span>
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86
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86
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> phast | 5 | {bio} | </span>
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87
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> phybin | 5 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -139,7 +139,6 @@ Last-Update: Sat, 26 Sep 2020 01:42:04 +0000</td>
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139
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> seqsero | 3 | {bio} | </span>
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140
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> tvc | 3 | {bio} | </span>
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> canu | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="plaintext"> cufflinks | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> emboss-explorer | 2 | {bio} | </span>
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143
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> libctapimkt | 2 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> libsbml | 2 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -152,7 +151,9 @@ Last-Update: Sat, 26 Sep 2020 01:42:04 +0000</td>
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152
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> biosig4c++ | 1 | {physics,imaging-dev} | </span>
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153
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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154
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153
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> cat-bat | 1 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"> conda-package-handling | 1 | {bio-dev,bio} | </span>
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155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> ctn | 1 | {imaging-dev} | </span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext"> cufflinks | 1 | {bio,cloud} | </span>
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156
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> embassy-phylip | 1 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> emmax | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> gatb-core | 1 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -166,6 +167,7 @@ Last-Update: Sat, 26 Sep 2020 01:42:04 +0000</td>
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167
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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167
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> pbcopper | 1 | {bio-dev} | </span>
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168
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> pilercr | 1 | {bio} | </span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"> q2templates | 1 | {bio} | </span>
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169
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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170
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172
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> seqan | 1 | {bio-dev} | </span>
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171
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -173,7 +175,6 @@ Last-Update: Sat, 26 Sep 2020 01:42:04 +0000</td>
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173
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175
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> skesa | 1 | {bio} | </span>
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174
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176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> stringtie | 1 | {bio,covid-19} | </span>
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175
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177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> trace2dbest | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="plaintext"> vienna-rna | 1 | {covid-19,bio} | </span>
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178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> acedb | 0 | {cloud,bio} | </span>
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178
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179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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179
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> bamkit | 0 | {covid-19,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -183,7 +184,6 @@ Last-Update: Sat, 26 Sep 2020 01:42:04 +0000</td>
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183
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> biosyntax | 0 | {bio} | </span>
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184
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> bustools | 0 | {bio,covid-19} | </span>
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185
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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186
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="plaintext"> conda-package-handling | 0 | {bio-dev,bio} | </span>
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187
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> dextractor | 0 | {bio,covid-19} | </span>
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188
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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<td class="diff-line-num old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
189
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189
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> intake | 0 | {bio-dev,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -227,7 +227,6 @@ Last-Update: Sat, 26 Sep 2020 01:42:04 +0000</td>
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227
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227
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> plasmidid | 0 | {bio,covid-19} | </span>
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229
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> pplacer | 0 | {covid-19,bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="plaintext"> q2templates | 0 | {bio} | </span>
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230
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -243,6 +242,7 @@ Last-Update: Sat, 26 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> tophat-recondition | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> varscan | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC245" class="line" lang="plaintext"> vienna-rna | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> yanagiba | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> mssstest | -1 | {tools} | </span>
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