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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/46f29f7269b4a33a0115203436acb454d02704a7">46f29f72</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-27T13:45:14+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/46f29f7269b4a33a0115203436acb454d02704a7#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 27 Sep 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 27 Sep 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> dcmtk | 162 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 87 | {practice,covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 47 | {his,laboratory,covid-19,imaging,practice,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 38 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 41 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dicomscope | 28 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dicom3tools | 27 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> htsjdk | 27 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dicom3tools | 26 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dicomscope | 25 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> gnumed-server | 18 | {covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> ngs-sdk | 15 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> dcm2niix | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gdcm | 14 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gdcm | 14 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> ngs-sdk | 14 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> invesalius | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> adun.app | 12 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> m<span class="idiff left right">elting | 11 | {cloud,bio}</span> | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> <span class="idiff left right">minc-tools</span> | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> m<span class="idiff left right">inc-tools | 12 | {imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> <span class="idiff left right">nifticlib </span> | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> dicompyler | 10 | {oncology} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> <span class="idiff left right">nifticlib | 10 | {imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> <span class="idiff left right">melting | 10 | {cloud,bio}</span> | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> nifticlib | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> pixelmed | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> libncl | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> biosig4c++ | 8 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> fastlink | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> insighttoolkit4 | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> jebl2 | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> king | 8 | {typesetting,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> openslide | 8 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,7 +38,6 @@ Last-Update: Sun, 27 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> ea-utils | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> embassy-domalign | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> embassy-domsearch | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> jebl2 | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> mipe | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> multiqc | 7 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -45,6 +45,7 @@ Last-Update: Sun, 27 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> saint | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> salmon | 7 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> sibsim4 | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> stacks | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> staden | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> bart-view | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> embassy-domainatrix | 6 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -61,7 +62,6 @@ Last-Update: Sun, 27 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> radiant | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> sprai | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> spread-phy | 6 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> stacks | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> vtk-dicom | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> alter-sequence-alignment | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> arden | 5 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -71,6 +71,7 @@ Last-Update: Sun, 27 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> clonalorigin | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> dindel | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> ecopcr | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> elastix | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> jmodeltest | 5 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> lamarc | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -101,7 +102,6 @@ Last-Update: Sun, 27 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> blasr | 4 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> brig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> clonalframeml | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="plaintext"> elastix | 4 | {imaging} | </span>
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105
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> estscan | 4 | {bio} | </span>
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106
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> ghmm | 4 | {bio} | </span>
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107
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> hinge | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -146,6 +146,7 @@ Last-Update: Sun, 27 Sep 2020 01:42:04 +0000</td>
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> opencfu | 2 | {laboratory} | </span>
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147
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> orthanc-mysql | 2 | {imaging} | </span>
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> samtools-legacy | 2 | {bio-dev} | </span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> seqan | 2 | {bio-dev} | </span>
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> simpleitk | 2 | {imaging-dev} | </span>
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> atropos | 1 | {bio} | </span>
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> biosig4c++ | 1 | {physics,imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -169,7 +170,6 @@ Last-Update: Sun, 27 Sep 2020 01:42:04 +0000</td>
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169
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> pilercr | 1 | {bio} | </span>
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170
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> q2templates | 1 | {bio} | </span>
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171
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172
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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172
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="plaintext"> seqan | 1 | {bio-dev} | </span>
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173
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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174
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174
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> sight | 1 | {imaging} | </span>
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175
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175
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> skesa | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -227,8 +227,8 @@ Last-Update: Sun, 27 Sep 2020 01:42:04 +0000</td>
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227
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227
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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228
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228
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> plasmidid | 0 | {bio,covid-19} | </span>
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229
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229
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> pplacer | 0 | {covid-19,bio,bio-phylogeny} | </span>
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230
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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231
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230
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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231
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> scrappie | 0 | {covid-19,bio} | </span>
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