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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/hyphy">Debian Med / hyphy</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/c06fe59cd807c8b182d09c0844878db41869e2de">c06fe59c</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T20:54:36+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/0b2bcb628925757b1a305bf798538986639da890">0b2bcb62</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T20:54:37+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.5.18+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/1d31210a02d0d62e1058a4bf7b345edc76331585">1d31210a</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T20:54:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.5.18+dfsg'
Update to upstream version '2.5.18+dfsg'
with Debian dir d6fde3ee7b4d12c7bab0b8cd320b196837002c7b</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/50f63d9c5e206bc5c17792c246cda0f8ce7f9a85">50f63d9c</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T20:54:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/202312fc65ff1a39664971fe77e3a9be4020b5a1">202312fc</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T20:54:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/16fdf2d51de67d15673054eb1f17957d37e6af1f">16fdf2d5</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T21:43:17+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refreshed Files-Excluded:
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/56a5beea36eb1a9f1a04c60cb85026a3e5a922e8">56a5beea</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T21:51:09+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refreshed use_debian_sqlite.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/5c4a7ed6f738d5b66c184a91f4e86fa93dfb2752">5c4a7ed6</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T21:58:42+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">deleted patches related to gtest
gtest is not in use anymore in the upstream project.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/72486579293f7a1fab3780dc544a98d5bd5ced73">72486579</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T22:04:32+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">removed drop_profiling_option.patch
although the -g option is somewhat redundant, it should probably not
be a concern regarding bug #793345, which was about profiling options,
which aren't there anymore.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/4dea6831167ac1244fdeb4b3b2d779175f3ea8fc">4dea6831</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T22:12:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/copyright: gtest removed upstream
particular references to gtest in the debian/copyright file are thus
not needed anymore.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/9946d6b0418f313f9bf6a860e0db27715fbd6042">9946d6b0</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T22:22:45+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/copyright: listing third parties in src/contrib
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/a015bc2ccf84b7d7c32e81e5fd239e1104cce345">a015bc2c</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T22:26:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">removed 00todo since gtest is not in use anymore
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/93ee29b88b7726a2747d0ee7db56f35d33cb0a98">93ee29b8</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T22:33:22+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/rules: remove note about gtest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/88e4a6f427dabca214055807b31c9d34958d5a76">88e4a6f4</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T22:36:41+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">removed lintian-overrides related to gtest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/ca4babcb66cb21a3cb9bdf174e0a0308f87708c6">ca4babcb</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T22:45:56+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/copyright: addressing lintian issues
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/fa52485160a67310d93defe71b81149443701c6b">fa524851</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-24T23:11:25+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/hyphy-common.install: now from usr/share/*
previously, installation came from usr/lib/* to usr/share
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/2cb9976b142511c1ff31359d6cbcb0a5e0bd91cb">2cb9976b</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-25T00:00:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/rules: disable SSE3 and AVX using cmake switches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/340cab8571203582b602470b14c287af9b090c15">340cab85</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-25T00:02:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">added fix_brace_mismatch.patch
this fixes a compilation failure when disabling vector intrinsics.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/326043778e5cafd7346d042033f7beeaf52f16b9">32604377</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-25T00:03:57+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/871d4e2d01666a048e20bd4e20a82db3b4a132b2">871d4e2d</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-25T00:03:57+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/a164b792d0f09723cff0d53416d8385fa5e0f49c">a164b792</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-25T00:04:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/e358f6be3741eadbe4ba7a1367ff1f1af07905e4">e358f6be</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-25T00:16:11+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">synchronized d/changelog with git log
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/5cc7d1a7d2bf6008cd70e422f09edfce856d25e7">5cc7d1a7</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-25T20:57:32+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">convert ISO-8859-1 files to UTF-8
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/01e36c3ef67cdfae3501f8b8c2427cd371c899b6">01e36c3e</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-25T20:58:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">gtest replaced by script ./run_unit_tests.sh
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/c69ae78fa5fd27ead25e5456052d1905b3c21c72">c69ae78f</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-25T21:48:56+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/rules: copy executables to place for tests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/b5692e5ddd7630deaeeacfc9be68b3439886218f">b5692e5d</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-25T22:04:58+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refreshed changelog for more clarity
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/55051cc4e197e6b7b8c805f9707aa7ae52dd6310">55051cc4</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-28T21:12:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">added rm_arch_specific_flags.patch
Flags disabling sse3 and avx have no necessity to be passed to the
compiler, and prevent compilation on non-x86 architectures. This
patch allows building the source code on non-x86 CPUs.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/8c0c2bc27061cd4f3196dd8b11fad37475201574">8c0c2bc2</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-28T21:33:25+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">added myself to uploaders
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/72d8ad8aa527afb6bd0e4f2501f387e3964c013f">72d8ad8a</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-28T21:33:54+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove unnecessary Team Upload line in changelog.
Changes-By: lintian-brush
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/61da1e73735d028b356ec2a705ee066472cea975">61da1e73</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-09-28T21:34:56+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>14 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#2988cbe972fe24aeb6ee4536af0d0adb14495729">
<span class="new-file">
+
.github/workflows/benchmark.yml
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<li class="file-stats">
<a href="#16911b9809e0d05b7b124ba8453fa5303d74924c">
<span class="new-file">
+
.github/workflows/release.yml
</span>
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</li>
<li class="file-stats">
<a href="#1d19aad7b7b27d190877325ddc2bf187f2ea4808">
<span class="new-file">
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.github/workflows/stale.yml
</span>
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</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
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<li class="file-stats">
<a href="#9e7abe1d7f9349d141ac47878f102f7985f4a921">
<span class="new-file">
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bench.js
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<li class="file-stats">
<a href="#5de5d7b57f09e7f9045eff525d6d67abe147793c">
<span class="deleted-file">
−
contrib/gtest-1.7.0/CHANGES
</span>
</a>
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<a href="#938d9ab7469e311678e67e81dcee0604988f41df">
<span class="deleted-file">
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contrib/gtest-1.7.0/CMakeLists.txt
</span>
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<a href="#a49b505266d90d6170f8c3ef78e422d09736d81a">
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contrib/gtest-1.7.0/CONTRIBUTORS
</span>
</a>
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<a href="#7d6778dd951738144a02a1023599022d92967f21">
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−
contrib/gtest-1.7.0/LICENSE
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contrib/gtest-1.7.0/Makefile.am
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<a href="#c869ff13403c1283f3ba1ea9fa89ed2af09b3835">
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contrib/gtest-1.7.0/Makefile.in
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contrib/gtest-1.7.0/README
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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