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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/aaf5fb39db57c966c92949672799c9d62c6292b3">aaf5fb39</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-09-30T13:45:14+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/aaf5fb39db57c966c92949672799c9d62c6292b3#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 30 Sep 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 30 Sep 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 16<span class="idiff left right">1</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 8<span class="idiff left right">8</span> | {practice,covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 16<span class="idiff left right">4</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 8<span class="idiff left right">9</span> | {practice,covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 48 | {his,laboratory,covid-19,imaging,practice,oncology} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> gdcm | 40 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> dicom3tools | 27 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dicomscope | 26 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dicomscope | 27 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> htsjdk | 26 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dicom3tools | 25 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> gnumed-server | 18 | {covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> gdcm | 16 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> ngs-sdk | 16 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> gdcm | 15 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> gdcm | 15 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> dcm2niix | 14 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> gdcm | 14 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> invesalius | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> adun.app | 12 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> minc-tools | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> nifticlib | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> pixelmed | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> melting | 10 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> pixelmed | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> nifticlib | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> nifticlib | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> plastimatch | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> fastlink | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> insighttoolkit4 | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> libncl | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> openslide | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> orthanc-webviewer | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> sibsim4 | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> stacks | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> anfo | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> biojava-live | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> biosig4c++ | 7 | {physics,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> insighttoolkit4 | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> king | 7 | {typesetting,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> mipe | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> multiqc | 7 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> openslide | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> phyutility | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> salmon | 7 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> treeview | 7 | {bio,bio-phylogeny} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -50,9 +50,11 @@ Last-Update: Wed, 30 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> gatb-core | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> jebl2 | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> jellyfish1 | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> libdivsufsort | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> paraclu | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> perm | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> piler | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> radiant | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> saint | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> spread-phy | 6 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> staden | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -62,7 +64,6 @@ Last-Update: Wed, 30 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> fsm-lite | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> ipig | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> libdivsufsort | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> mhap | 5 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> neobio | 5 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -73,7 +74,6 @@ Last-Update: Wed, 30 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> placnet | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> proalign | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="plaintext"> radiant | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> rdp-classifier | 5 | {bio} | </span>
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78
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> rtax | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> samblaster | 5 | {covid-19,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -145,6 +145,7 @@ Last-Update: Wed, 30 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> opencfu | 2 | {laboratory} | </span>
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> openslide | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> orthanc-mysql | 2 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"> papyrus | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> samtools-legacy | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> seqan | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> simpleitk | 2 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -166,8 +167,8 @@ Last-Update: Wed, 30 Sep 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> libseqlib | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> murasaki | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"> ngs-sdk | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> pbcopper | 1 | {bio-dev} | </span>
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172
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> pilercr | 1 | {bio} | </span>
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174
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> q2templates | 1 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -220,15 +221,14 @@ Last-Update: Wed, 30 Sep 2020 01:42:04 +0000</td>
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220
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221
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> miaviewit | 0 | {imaging-dev} | </span>
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221
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> milib | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> nanosv | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC223" class="line" lang="plaintext"> ngs-sdk | 0 | {bio-dev} | </span>
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224
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> nifticlib | 0 | {imaging-dev} | </span>
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225
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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226
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> plasmidid | 0 | {bio,covid-19} | </span>
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229
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> pplacer | 0 | {covid-19,bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> scrappie | 0 | {covid-19,bio} | </span>
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