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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/htslib">Debian Med / htslib</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/htslib/-/commit/84fcfcfda2b0b89d743bc8adb617abdf5cc22d4b">84fcfcfd</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-10-02T11:33:59+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix plugin code
</pre>
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<strong><a href="https://salsa.debian.org/med-team/htslib/-/commit/88644ba8e4096302d996dae2a0399195e2e53819">88644ba8</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-10-02T11:35:55+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Enable plugins
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<h4>4 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#8c86e61ca93cf161d9766441952c77148892d22c">
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+
debian/patches/273c5e76a1694aa2a13fd51c133abed2ef8ab4d3.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/htslib/-/compare/a587563772cd52381796f8ded644d4142282ebf7...88644ba8e4096302d996dae2a0399195e2e53819#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">htslib</span> <span class="p">(</span><span class="m" style="color: #099;">1.11</span><span class="p">-</span><span class="m" style="color: #099;">2</span><span class="p">)</span> <span class="n" style="color: #333;">UNRELEASED</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Enable</span> <span class="n" style="color: #333;">plugins</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="mosel"> <span class="n" style="color: #333;">Closes</span><span class="p">:</span> <span class="p">#</span><span class="m" style="color: #099;">971542</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Andreas</span> <span class="n" style="color: #333;">Tille</span> <span class="p"><</span><span class="n" style="color: #333;">tille</span><span class="p">@</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span> <span class="n" style="color: #333;">Fri</span><span class="p">,</span> <span class="m" style="color: #099;">02</span> <span class="n" style="color: #333;">Oct</span> <span class="m" style="color: #099;">2020</span> <span class="m" style="color: #099;">11</span><span class="p">:</span><span class="m" style="color: #099;">35</span><span class="p">:</span><span class="m" style="color: #099;">21</span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"><span class="n" style="color: #333;">htslib</span> <span class="p">(</span><span class="m" style="color: #099;">1.11</span><span class="p">-</span><span class="m" style="color: #099;">1</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">New</span> <span class="n" style="color: #333;">upstream</span> <span class="k" style="font-weight: 600;">version</span></span>
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<li id="8c86e61ca93cf161d9766441952c77148892d22c">
<a href="https://salsa.debian.org/med-team/htslib/-/compare/a587563772cd52381796f8ded644d4142282ebf7...88644ba8e4096302d996dae2a0399195e2e53819#8c86e61ca93cf161d9766441952c77148892d22c"><strong>debian/patches/273c5e76a1694aa2a13fd51c133abed2ef8ab4d3.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">From 273c5e76a1694aa2a13fd51c133abed2ef8ab4d3 Mon Sep 17 00:00:00 2001</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">From: Andrew Whitwham <whitwham@users.noreply.github.com></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Date: Wed, 30 Sep 2020 09:37:45 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Subject: [PATCH] Variable name used in dlsym corrected.</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/971542</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">The hfile irods plugin depends on a constructed symbol name which was no longer being used.</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> plugin.c | 2 +-</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> 1 file changed, 1 insertion(+), 1 deletion(-)</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff">--- a/plugin.c</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/plugin.c</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="p">@@ -153,7 +153,7 @@</span> plugin_void_func *load_plugin(void **plu</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> const char *basename = slash? slash+1 : filename;</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> kputsn(basename, strcspn(basename, ".-+"), &symbolg);</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- *(void **) &sym = dlsym(lib, symbol);</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ *(void **) &sym = dlsym(lib, symbolg.s);</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> free(symbolg.s);</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> if (sym == NULL) goto error;</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> }</span></pre>
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<a href="https://salsa.debian.org/med-team/htslib/-/compare/a587563772cd52381796f8ded644d4142282ebf7...88644ba8e4096302d996dae2a0399195e2e53819#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,3 +5,4 @@ testShebang.patch</td>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">fix_float_precision</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"># big-endian</span>
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">cram_to_bam_export.patch</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">273c5e76a1694aa2a13fd51c133abed2ef8ab4d3.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/htslib/-/compare/a587563772cd52381796f8ded644d4142282ebf7...88644ba8e4096302d996dae2a0399195e2e53819#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,7 +26,7 @@ endif</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> cp -a test test_backup</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> # to help with cross building, otherwise MMAP might get turned off</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> export ac_cv_func_mmap_fixed_mapped=yes && autoconf && \</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> dh_auto_configure -- --enable-libcurl --enable-gcs --enable-s3</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> dh_auto_configure -- --enable-libcurl --enable-gcs --enable-s3<span class="idiff left right"> --enable-plugins --with-plugin-path='/usr/local/lib/htslib:$(plugindir)'</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">override_dh_auto_build-arch:</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> dh_auto_build -- \</span>
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