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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8782faff21d335b26a039a01e148fae40ffcc9d0">8782faff</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-07T13:45:00+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8782faff21d335b26a039a01e148fae40ffcc9d0#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 07 Oct 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 07 Oct 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 16<span class="idiff left right">3</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 16<span class="idiff left right">2</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 84 | {practice,covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 47 | {his,laboratory,covid-19,imaging,practice,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">7</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dicom3tools | 30 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dicomscope | 26 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> htsjdk | 23 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> ngs-sdk | 18 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> htsjdk | 22 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dcm2niix | 17 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> gdcm | 17 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gdcm | 17 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> gdcm | 17 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> ngs-sdk | 17 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gnumed-server | 16 | {covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> invesalius | 15 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> nifticlib | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> nifticlib | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> adun.app | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> minc-tools | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> melting | 9 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> openslide | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> plastimatch | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> biosig4c++ | 8 | {physics,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> vtk-dicom | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> bart-view | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> biojava-live | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> dicompyler | 7 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> fastlink | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> orthanc-webviewer | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> phyutility | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> sibsim4 | 7 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -45,13 +45,13 @@ Last-Update: Wed, 07 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> multiqc | 6 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> salmon | 6 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> treeview | 6 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> ea-utils | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> embassy-domainatrix | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> embassy-domalign | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> embassy-domsearch | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> gatb-core | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> jellyfish1 | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> libdivsufsort | 5 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> nutsqlite | 5 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> obitools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> orthanc-dicomweb | 5 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> paraclu | 5 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -65,7 +65,6 @@ Last-Update: Wed, 07 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> beast-mcmc | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> biomaj3-cli | 4 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> dindel | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> ea-utils | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> ecopcr | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> fastml | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> fsm-lite | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -75,6 +74,7 @@ Last-Update: Wed, 07 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> mauve-aligner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> mhap | 4 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> neobio | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> nutsqlite | 4 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> phybin | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> placnet | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> proalign | 4 | {bio,bio-phylogeny} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -122,7 +122,6 @@ Last-Update: Wed, 07 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> sga | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> soapaligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> soapsnp | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="plaintext"> surankco | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> tvc | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> velvetoptimiser | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> yaha | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -135,7 +134,6 @@ Last-Update: Wed, 07 Oct 2020 01:42:04 +0000</td>
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134
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> mrs | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> murasaki | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> ncbi-vdb | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="plaintext"> ngs-sdk | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> opencfu | 2 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> openslide | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> orthanc-mysql | 2 | {imaging} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -147,6 +145,7 @@ Last-Update: Wed, 07 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> seqsero | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> sight | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> simpleitk | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"> surankco | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> trace2dbest | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> atropos | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> biosig4c++ | 1 | {physics,imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -166,6 +165,7 @@ Last-Update: Wed, 07 Oct 2020 01:42:04 +0000</td>
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> libseqlib | 1 | {bio-dev} | </span>
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167
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> murasaki | 1 | {bio} | </span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="plaintext"> ngs-sdk | 1 | {bio-dev} | </span>
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169
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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170
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> oscar | 1 | {data,practice,tools} | </span>
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171
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> pbcopper | 1 | {bio-dev} | </span>
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