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<h3>
Alexandre Mestiashvili pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/bowtie2">Debian Med / bowtie2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/a45f45328c556942a004dd3773ac51bcc7e57479">a45f4532</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2020-10-07T19:26:50+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.2</pre>
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</ul>
<h4>30 changed files:</h4>
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<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
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+
.gitignore
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<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
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+
.travis.yml
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<li class="file-stats">
<a href="#dea7d9d2c0ed0c505374f9f90877bedd8f077710">
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+
BOWTIE2_VERSION
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<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<li class="file-stats">
<a href="#f11fb3bba37e7060bedcd5895812b7c511c52651">
MANUAL
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<li class="file-stats">
<a href="#465370da702349b6dcb3f9f2026872cad6877efa">
MANUAL.markdown
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
<span class="deleted-file">
−
VERSION
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<li class="file-stats">
<a href="#057e0784d807c7b84958635ddeeb5003f2751ece">
aln_sink.cpp
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<li class="file-stats">
<a href="#03d5fe68cb76a542cb9c06b8e03093e21319ca35">
blockwise_sa.h
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<li class="file-stats">
<a href="#20032103dc113eacde067d1154cc770339598f43">
bowtie2
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<li class="file-stats">
<a href="#464ce98392db4e108605b7a12696e7c3434eaf56">
bowtie2-build
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<li class="file-stats">
<a href="#32b48be3271f7fbdfc7624257efa094ea87ea5d8">
bt2_dp.cpp
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<li class="file-stats">
<a href="#6026283a643bf7fb08c2ef0b797486df93cf0698">
bt2_search.cpp
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<li class="file-stats">
<a href="#ccc364c6c660e798a4f3c3b78119cbea257aee1e">
doc/manual.html
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<li class="file-stats">
<a href="#c0f67b6cd9d20af5551a58cb10960de0a14aef34">
doc/release.txt
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<li class="file-stats">
<a href="#a1ba375e8deab5b12b1347797835e927dca95425">
doc/website/manual.ssi
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<a href="#90c845de025e4a3981ac510de22afc55255c90b6">
doc/website/old_news.ssi
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<a href="#9485aa1b2c39982f48264019fde0712132ed80f5">
doc/website/recent_news.ssi
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<li class="file-stats">
<a href="#59bf596910fb7006481a4d8a45de81ff2bd75a4d">
doc/website/rhsidebar.ssi
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<li class="file-stats">
<a href="#1302eb0ba429a6d3ca861d358e1d4dc473952bd9">
ds.h
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<li class="file-stats">
<a href="#50b0e95b63ccb2c46e008fda8904d780b714df41">
opts.h
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<li class="file-stats">
<a href="#6c8922e214bc665a49b5acea11b505cbd36446c5">
pat.h
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<li class="file-stats">
<a href="#feeebf6c8e249c25303af46ea1abd54e5f54b5db">
processor_support.h
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<li class="file-stats">
<a href="#7398ca21ea2a2c7a38ca176ea1edaeb67b9ca8c0">
sam.h
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<li class="file-stats">
<a href="#959c0d46a2e2db62dbce7ed51c93687c9fde6d7a">
scripts/bowtie2-hbb.sh
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<li class="file-stats">
<a href="#b2f40f265a19442da92f6d06c8e081ccf28c681b">
scripts/sim/run.sh
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<li class="file-stats">
<a href="#54bdc2e95dbd86d93a56d1f6445a8c2f9c6bedfb">
scripts/test/simple_tests.pl
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<h5>The diff was not included because it is too large.</h5>
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