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<h3>
Alexandre Mestiashvili pushed to branch master
at <a href="https://salsa.debian.org/med-team/bowtie2">Debian Med / bowtie2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/a45f45328c556942a004dd3773ac51bcc7e57479">a45f4532</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2020-10-07T19:26:50+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/6004b45fa82719629b95d108693526af68145de2">6004b45f</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2020-10-07T19:27:12+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.4.2'
Update to upstream version '2.4.2'
with Debian dir 713d84a42faf0a971ce12ffc958c650b0aca5832</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/4071cec923867be2d99a78da99a31cbb6301a6b1">4071cec9</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2020-10-07T20:03:57+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refresh patches, drop applied by upstream gcc10_ftbfs_invalid_dquote_char.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/52d14f202ed33f1c6ad60e936e4cfebaf8d3628d">52d14f20</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2020-10-07T20:06:11+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Apply cme fix dpkg, drop version from libsimde-dev
</pre>
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<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
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+
.gitignore
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<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
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+
.travis.yml
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<a href="#dea7d9d2c0ed0c505374f9f90877bedd8f077710">
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+
BOWTIE2_VERSION
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<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<li class="file-stats">
<a href="#f11fb3bba37e7060bedcd5895812b7c511c52651">
MANUAL
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<li class="file-stats">
<a href="#465370da702349b6dcb3f9f2026872cad6877efa">
MANUAL.markdown
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
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VERSION
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<li class="file-stats">
<a href="#057e0784d807c7b84958635ddeeb5003f2751ece">
aln_sink.cpp
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<li class="file-stats">
<a href="#03d5fe68cb76a542cb9c06b8e03093e21319ca35">
blockwise_sa.h
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<li class="file-stats">
<a href="#20032103dc113eacde067d1154cc770339598f43">
bowtie2
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<a href="#464ce98392db4e108605b7a12696e7c3434eaf56">
bowtie2-build
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<a href="#32b48be3271f7fbdfc7624257efa094ea87ea5d8">
bt2_dp.cpp
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<li class="file-stats">
<a href="#6026283a643bf7fb08c2ef0b797486df93cf0698">
bt2_search.cpp
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#8349e79c83e3dffc4d4ae366712ef4e351aebe80">
debian/patches/correct_64bit_test
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<li class="file-stats">
<a href="#3ab00da70db0f997a696f5703a50cd50fe504347">
debian/patches/do-not-rebuild-during-test.patch
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<li class="file-stats">
<a href="#3ee0030ede7a48b8f10e35e7f10d0f74b240b097">
<span class="deleted-file">
−
debian/patches/gcc10_ftbfs_invalid_dquote_char.patch
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<li class="file-stats">
<a href="#4d4a394ff4174f20019a8af4d8b6185efe92c21f">
debian/patches/hardening.patch
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<a href="#41edb87d75827ea69fc4be16c1d2830db9a0eb81">
debian/patches/no_sanity
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<a href="#76258ff6f1526200cf3fda90e9f37fd9ee4b4364">
debian/patches/reproducible.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#6815d1260ed0fdc6f0d97bc028700b124f2bf358">
debian/patches/skip_test_requiring_non-free_libmath-random-perl.patch
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<li class="file-stats">
<a href="#ccc364c6c660e798a4f3c3b78119cbea257aee1e">
doc/manual.html
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<li class="file-stats">
<a href="#c0f67b6cd9d20af5551a58cb10960de0a14aef34">
doc/release.txt
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<li class="file-stats">
<a href="#a1ba375e8deab5b12b1347797835e927dca95425">
doc/website/manual.ssi
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<li class="file-stats">
<a href="#90c845de025e4a3981ac510de22afc55255c90b6">
doc/website/old_news.ssi
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<a href="#9485aa1b2c39982f48264019fde0712132ed80f5">
doc/website/recent_news.ssi
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<h5>The diff was not included because it is too large.</h5>
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