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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/qtltools">Debian Med / qtltools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/-/commit/374470be1a9bc78ba0dd09380fead2a9f9086984">374470be</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-10-10T17:58:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/patches/Makefile_config.patch: refresh
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/-/commit/514b3e41274968747ba42038aa55f6d3a069c353">514b3e41</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-10-10T18:01:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix uses-deprecated-adttmp debian/tests/run-sample-analysis
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/-/commit/204dad2055af20cadded70543f00e453ee3013ec">204dad20</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-10-10T18:04:06+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/upstream/metadata: added Repository{,-Browse} and Bug-{Database,Submit}.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/-/commit/62c83e691b4997c8fad7a771fd6cddb9fd7160db">62c83e69</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-10-10T18:04:49+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/-/commit/53818d2b5d28e1b803f802f5ba38eb278aac1089">53818d2b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-10-10T18:04:49+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/-/commit/73079f62c7bf96ccd3d6d6fe507e7e23acb36c2c">73079f62</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-10-10T18:22:36+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">script/ is now scripts/
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/-/commit/b25e46a3d429aaa46f3e55ed1807c159e09fbe0d">b25e46a3</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-10-10T18:27:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#9c508e350e985b45f6e268390caa2ba19fb622d9">
debian/patches/Makefile_config.patch
</a>
</li>
<li class="file-stats">
<a href="#88e25f475f0d9d490ade98c0007deb0f7df6c75c">
debian/qtltools-example.install
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#5cc37fd93ea78de7fa21d0db40d2e809ed627fc3">
debian/tests/run-sample-analysis
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</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/qtltools/-/compare/67bb0ca999188342ed5f44c2a2ec6cf7c6d8fa07...b25e46a3d429aaa46f3e55ed1807c159e09fbe0d#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">qtltools (1.3.1+dfsg-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">qtltools (1.3.1+dfsg-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<td class="diff-line-num new old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * Make really sure examples.tar.xz will not contain itself</span>
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> * debhelper-compat 12</span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> * Remove obsolete fields Contact, Name from debian/upstream/metadata</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,7 +13,16 @@ qtltools (1.3.1+dfsg-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Standards-Version: 4.5.0 (routine-update)</span>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> -- Dylan Aïssi <daissi@debian.org> Sun, 06 Sep 2020 14:03:36 +0200</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> [ Michael R. Crusoe ]</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> * debian/patches/Makefile_config.patch: refresh</span>
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<td class="diff-line-num new old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> * Fix uses-deprecated-adttmp debian/tests/run-sample-analysis</span>
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<td class="diff-line-num new old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> * debian/upstream/metadata: added Repository{,-Browse} and</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> Bug-{Database,Submit}.</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> * script/ is now scripts/</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> -- Michael R. Crusoe <crusoe@debian.org> Sat, 10 Oct 2020 18:04:50 +0200</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">qtltools (1.2+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/qtltools/-/compare/67bb0ca999188342ed5f44c2a2ec6cf7c6d8fa07...b25e46a3d429aaa46f3e55ed1807c159e09fbe0d#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,6 +17,7 @@ Standards-Version: 4.5.0</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/qtltools</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/qtltools.git</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Homepage: https://qtltools.github.io/qtltools/</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Package: qtltools</span>
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<td class="diff-line-num new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Architecture: any</span>
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<li id="9c508e350e985b45f6e268390caa2ba19fb622d9">
<a href="https://salsa.debian.org/med-team/qtltools/-/compare/67bb0ca999188342ed5f44c2a2ec6cf7c6d8fa07...b25e46a3d429aaa46f3e55ed1807c159e09fbe0d#9c508e350e985b45f6e268390caa2ba19fb622d9"><strong>debian/patches/Makefile_config.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,24 +3,22 @@ Description: Configure the makefile for Debian packaging.</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 2019-09-30</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff">--- <span class="idiff left right">a</span>/Makefile</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ <span class="idiff left right">b</span>/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="p">@@ -<span class="idiff left right">28,11 +28</span>,7 @@</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"> <span class="idiff left right">VPATH=$(shell for file in `find src -name *.cpp`; do echo $$(dirname $$file); done)</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">--- <span class="idiff left right">qtltools.orig</span>/Makefile</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ <span class="idiff left right">qtltools</span>/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -<span class="idiff left right">117,9 +117</span>,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> <span class="idiff left right">endif</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> #DEFAULT VERSION (SET UP THE VARIABLES IN THE BEGINING OF THE MAKEFILE)</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-all: CXXFLAG=$(CXXFLAG_REL) $(CXXFLAG_WRN)</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-all: IFLAG=-Ilib/OTools -Ilib -I$(RMATH_INC) -I$(HTSLD_INC) -I$(BOOST_INC)</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-all: LIB_FILES=$(RMATH_LIB)/libRmath.a $(HTSLD_LIB)/libhts.a $(BOOST_LIB)/libboost_iostreams.a $(BOOST_LIB)/libboost_program_options.a</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-all: LDFLAG=$(CXXFLAG_REL)</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-all: $(BFILE)</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+all: debian</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"> #DE<span class="idiff left right">FAULT DE</span>BUG VERSION (SET UP THE VARIABLES IN THE BEGINING OF THE MAKEFILE)</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"> <span class="idiff left right">all-db</span>g: CXXFLAG=$(CXXFLAG_DBG) $(CXXFLAG_WRN)</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"><span class="p">@@ -1<span class="idiff left right">29,6 +125</span>,14 @@</span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"> <span class="idiff left right">mac-dbg: LDFLAG=$(CXXFLAG_DBG) -L /opt/local/lib</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"> <span class="idiff left right">mac-dbg: $(BFILE</span>)</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> #DEBUG VERSION (SET UP THE VARIABLES IN THE BEGINING OF THE MAKEFILE)</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> <span class="idiff left right">debu</span>g: CXXFLAG=$(CXXFLAG_DBG) $(CXXFLAG_WRN)</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="p">@@ -1<span class="idiff left right">99,6 +197</span>,14 @@</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> <span class="idiff left right"> rmdir --ignore-fail-on-non-empty -p $(DESTDIR)$(man1dir)</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> <span class="idiff left right"> rmdir --ignore-fail-on-non-empty -p $(DESTDIR)$(autocompdir</span>)</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#DEBIAN PACKAGE VERSION</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+debian: CXXFLAG=$(CXXFLAG_REL) $(CXXFLAG_WRN) $(CXXFLAGS) $(CPPFLAGS)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -33,3 +31,10 @@ Forwarded: not-needed</td>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="diff"> #COMPILATION RULES</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="diff"> $(BFILE): $(OFILE)</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="diff"> $(CXX) $^ $(LIB_FILES) -o $@ $(LIB_FLAGS) $(LDFLAG)</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="p">@@ -308,4 +314,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> clean-gwas:</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> rm -f obj/gwas_*.o $(BFILE)</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- </span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span> No newline at end of file</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ </span></span></pre>
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<a href="https://salsa.debian.org/med-team/qtltools/-/compare/67bb0ca999188342ed5f44c2a2ec6cf7c6d8fa07...b25e46a3d429aaa46f3e55ed1807c159e09fbe0d#88e25f475f0d9d490ade98c0007deb0f7df6c75c"><strong>debian/qtltools-example.install</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tests</span><span class="o" style="font-weight: 600;">/</span><span class="nx">run</span><span class="o" style="font-weight: 600;">-</span><span class="nx">sample</span><span class="o" style="font-weight: 600;">-</span><span class="nx">analysis</span> <span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qtltools</span><span class="o" style="font-weight: 600;">/</span><span class="nx">examples</span><span class="o" style="font-weight: 600;">/</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">upstream</span><span class="o" style="font-weight: 600;">.</span><span class="nx">example</span><span class="o" style="font-weight: 600;">/</span><span class="nx">examples</span><span class="o" style="font-weight: 600;">.</span><span class="nx">tar</span><span class="o" style="font-weight: 600;">.</span><span class="nx">xz</span> <span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qtltools</span><span class="o" style="font-weight: 600;">/</span><span class="nx">examples</span><span class="o" style="font-weight: 600;">/</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="php"><span class="nx">script</span><span class="o" style="font-weight: 600;">/*</span> <span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qtltools</span><span class="o" style="font-weight: 600;">/</span><span class="nx">examples</span><span class="o" style="font-weight: 600;">/</span></span></pre>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"><span class="nx">script<span class="idiff left right">s</span></span><span class="o" style="font-weight: 600;">/*</span> <span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qtltools</span><span class="o" style="font-weight: 600;">/</span><span class="nx">examples</span><span class="o" style="font-weight: 600;">/</span></span></pre>
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<a href="https://salsa.debian.org/med-team/qtltools/-/compare/67bb0ca999188342ed5f44c2a2ec6cf7c6d8fa07...b25e46a3d429aaa46f3e55ed1807c159e09fbe0d#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<a href="https://salsa.debian.org/med-team/qtltools/-/compare/67bb0ca999188342ed5f44c2a2ec6cf7c6d8fa07...b25e46a3d429aaa46f3e55ed1807c159e09fbe0d#5cc37fd93ea78de7fa21d0db40d2e809ed627fc3"><strong>debian/tests/run-sample-analysis</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,13 +5,13 @@</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Last-Update: 2016-11-16</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span>qtltools</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$A<span class="idiff left right">DT</span>TMP</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">A<span class="idiff left right">DT</span>TMP</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$A<span class="idiff left right">UTOPKGTEST_</span>TMP</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">A<span class="idiff left right">UTOPKGTEST_</span>TMP</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$A<span class="idiff left right">DT</span>TMP</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> /usr/share/doc/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/examples/<span class="k" style="font-weight: 600;">*</span> <span class="nv" style="color: #008080;">$A<span class="idiff left right">DT</span>TMP</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$A<span class="idiff left right">UTOPKGTEST_</span>TMP</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> /usr/share/doc/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/examples/<span class="k" style="font-weight: 600;">*</span> <span class="nv" style="color: #008080;">$A<span class="idiff left right">UTOPKGTEST_</span>TMP</span></span>
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">tar </span>Jxvf <span class="nv" style="color: #008080;">$A<span class="idiff left right">DT</span>TMP</span>/examples.tar.xz</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">tar </span>Jxvf <span class="nv" style="color: #008080;">$A<span class="idiff left right">UTOPKGTEST_</span>TMP</span>/examples.tar.xz</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Mode PCA</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell">QTLtools pca <span class="se" style="color: #d14;">\</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -54,4 +54,4 @@ QTLtools trans \</td>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="shell"> <span class="nt" style="color: #000080;">--normal</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="shell"> <span class="nt" style="color: #000080;">--out</span> trans.sample</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: #000080;">-f</span> <span class="nv" style="color: #008080;">$A<span class="idiff left right">DT</span>TMP</span>/<span class="k" style="font-weight: 600;">*</span></span></pre>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: #000080;">-f</span> <span class="nv" style="color: #008080;">$A<span class="idiff left right">UTOPKGTEST_</span>TMP</span>/<span class="k" style="font-weight: 600;">*</span></span></pre>
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<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<a href="https://salsa.debian.org/med-team/qtltools/-/compare/67bb0ca999188342ed5f44c2a2ec6cf7c6d8fa07...b25e46a3d429aaa46f3e55ed1807c159e09fbe0d#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Repository-Browse: https://github.com/qtltools/qtltools</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Repository: https://github.com/qtltools/qtltools.git</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Bug-Database: https://github.com/qtltools/qtltools/issues</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Bug-Submit: https://github.com/qtltools/qtltools/issues/new</span>
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1
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Reference:</span>
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2
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">- Author: ></span>
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3
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> Olivier Delaneau and Halit Ongen and Andrew A. Brown and Alexandre</span>
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