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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/52756845ef94931e88142c98b680d28e236ae505">52756845</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-14T13:45:33+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/52756845ef94931e88142c98b680d28e236ae505#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 14 Oct 2020 <span class="idiff left right">01</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 14 Oct 2020 <span class="idiff left right">13</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">1</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">1</span> | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">3</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">0</span> | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 48 | {oncology,his,laboratory,practice,imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> gdcm | 37 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> dicom3tools | 3<span class="idiff left right">1</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dicom3tools | 3<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">7</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> htsjdk | 25 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dcm2niix | <span class="idiff left right">19</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dcm2niix | <span class="idiff left right">21</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gdcm | 19 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> gdcm | 19 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gnumed-server | 17 | {covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 17 | {bio-dev</span>} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> <span class="idiff left right">invesalius | 16 | {imaging</span>} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> <span class="idiff left right">nifticlib | 13 | {imaging-dev}</span> | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> <span class="idiff left right">minc-tools | 12 | {imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> <span class="idiff left right">invesalius | 17 | {imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 16 | {bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> <span class="idiff left right">minc-tools | 13 | {imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> <span class="idiff left right">biosig4c++ | 12 | {imaging,physics}</span> | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> nifticlib | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> nifticlib | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> biosig4c++ | 11 | {imaging,physics} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> insighttoolkit4 | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> plastimatch | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> adun.app | 10 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> melting | 10 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> ngs-sdk | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> openslide | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> vtk-dicom | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> king | 8 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> bart-view | 7 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,12 +39,12 @@ Last-Update: Wed, 14 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> sibsim4 | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> stacks | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> anfo | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> dicompyler | 6 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> mipe | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> multiqc | 6 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> obitools | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> pymia | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> staden | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> dicompyler | 5 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> ea-utils | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> elastix | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> embassy-domainatrix | 5 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -70,6 +70,7 @@ Last-Update: Wed, 14 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> ecopcr | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> fastml | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> fsm-lite | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> ghmm | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> ipig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> lagan | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 4 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -77,7 +78,6 @@ Last-Update: Wed, 14 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> mauve-aligner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> mhap | 4 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> neobio | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> nutsqlite | 4 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> phybin | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> proalign | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> radiant | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -98,15 +98,14 @@ Last-Update: Wed, 14 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> delly | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> estscan | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> getdata | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="plaintext"> ghmm | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> hinge | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> jmodeltest | 3 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> lamarc | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="plaintext"> libminc | 3 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> libpal-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> metaphlan2 | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> microbegps | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> mrs | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext"> nutsqlite | 3 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> orthanc-postgresql | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> phast | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> plasmidseeker | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -120,6 +119,7 @@ Last-Update: Wed, 14 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> samblaster | 3 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> segemehl | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> sga | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"> sight | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> soapaligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> soapsnp | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> tvc | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -128,6 +128,7 @@ Last-Update: Wed, 14 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> blasr | 2 | {bio-ngs,bio} | </span>
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> busco | 2 | {covid-19,bio} | </span>
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130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> emboss-explorer | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"> libminc | 2 | {imaging-dev} | </span>
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132
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> murasaki | 2 | {bio} | </span>
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134
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> opencfu | 2 | {laboratory} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -138,14 +139,13 @@ Last-Update: Wed, 14 Oct 2020 01:42:04 +0000</td>
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> samtools-legacy | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> seqan | 2 | {bio-dev} | </span>
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> seqsero | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="plaintext"> sight | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> simpleitk | 2 | {imaging-dev} | </span>
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143
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> surankco | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> trace2dbest | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> acedb | 1 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> atropos | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="plaintext"> biosig4c++ | 1 | {imaging-dev,physics} | </span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> biosig4c++ | 1 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"> biosig4c++ | 1 | {imaging-dev,physics} | </span>
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> bio-tradis | 1 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> canu | 1 | {bio} | </span>
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