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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/ivar">Debian Med / ivar</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ivar/-/commit/701a9ea32e3c15bf4d0fb7adeacea2451c117c82">701a9ea3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-14T09:15:32+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.2.3+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ivar/-/commit/4e3d413c5700f9a3c062f84150e6d2e51a8cf6cd">4e3d413c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-14T09:15:32+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ivar/-/commit/b9d0d22a612bd060d5073ff7f0b6338dc1f7e50e">b9d0d22a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-14T09:15:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.2.3+dfsg'
Update to upstream version '1.2.3+dfsg'
with Debian dir 60c6c3b8d94e86f631d66bea57245c98684985ba</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ivar/-/commit/40b61ed90888b6ed17aa4572d822bcccab9d91b4">40b61ed9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-14T09:15:38+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Trim trailing whitespace.
Changes-By: lintian-brush
Fixes: lintian: trailing-whitespace
See-also: https://lintian.debian.org/tags/trailing-whitespace.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ivar/-/commit/9c57ca2f99e6482a048379871d832831b40e37c6">9c57ca2f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-14T09:17:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
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</li>
<li class="file-stats">
<a href="#8916d3ac534a031cc7ced8d92b33d84445db312c">
data/pair_information.tsv
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#f90d77509d9d998ba68e6c318915da545505db09">
docs/MANUAL.md
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<li class="file-stats">
<a href="#a1b23abed2f2622cdcfbf7ebdd9df3514e8d39d2">
docs/html/index.html
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<li class="file-stats">
<a href="#70d5543a879678fcc424b9ff82a56e4e3bdd9028">
docs/html/manualpage.html
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<li class="file-stats">
<a href="#6f57b2efe88d413dc666fa3f8ec3b655bffc3c21">
docs/latex/index.tex
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<li class="file-stats">
<a href="#5c221b94259c045c60e5cb232a9a20f2a1fb946b">
docs/latex/manualpage.tex
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<li class="file-stats">
<a href="#b4b22c75d1bae589f3ca348869da5660ee3502c3">
docs/man/man3/cookbookpage.3
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<li class="file-stats">
<a href="#b370cc115adb1c2f71c50b3503571c0bbb6f8b98">
docs/man/man3/installpage.3
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<li class="file-stats">
<a href="#0fe496c5ff26325c2cc39ab33e934b42a4627563">
docs/man/man3/manualpage.3
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<li class="file-stats">
<a href="#5f7b18dee983584e49a2de1ce4314b1de90e9c47">
<span class="deleted-file">
−
patches/fix_pipeline_link.patch
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</a>
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<li class="file-stats">
<a href="#3606774169a42ab183e9802974985fbf84881919">
<span class="deleted-file">
−
patches/series
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<li class="file-stats">
<a href="#f5ebd8700f07940a7e8a330865aaddad865be30d">
src/call_consensus_pileup.cpp
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<li class="file-stats">
<a href="#a90b501c7e9fd000f6912d38c32f6642d84586df">
src/call_consensus_pileup.h
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<li class="file-stats">
<a href="#d83847628f25144468f590d3395f6e53e3cde440">
src/call_variants.cpp
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<li class="file-stats">
<a href="#4a466c890bfc12a03440f5824d0cf9d098ba880f">
src/get_masked_amplicons.cpp
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<li class="file-stats">
<a href="#1ed56bc299f4a6bb415bcf995da6bf4ba876e7a4">
src/ivar.cpp
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<li class="file-stats">
<a href="#866d85bf13e1fa8b98ce1b6c3d29af2e31287c2c">
src/primer_bed.cpp
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<li class="file-stats">
<a href="#827c933f78896247082ec5f587c9bb8d23762f1f">
src/ref_seq.cpp
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<li class="file-stats">
<a href="#4644266bab7fcf61e2c44b911c9afd8ddac65d26">
src/ref_seq.h
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<li class="file-stats">
<a href="#00b6081be5179b8efd2e37aec59ecf773a10c3ed">
src/trim_primer_quality.cpp
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</li>
<li class="file-stats">
<a href="#fdbb3539733405317eca774fe99c6ab1d8306beb">
src/trim_primer_quality.h
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</li>
<li class="file-stats">
<a href="#cd4a49a19da4998db914e7cb10b78953338a4273">
tests/Makefile.am
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<li class="file-stats">
<a href="#75bffbb11d25186dd3d2c6aa35d85c3bf441a4d0">
tests/check_quality_trim.cpp
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<li class="file-stats">
<a href="#cc537d8192ad73764985b8cb628b4e7371a78a18">
tests/test_consensus_min_depth.cpp
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</li>
<li class="file-stats">
<a href="#a5cd08d01d59b4eef27e30105aa8893394a12cad">
<span class="new-file">
+
tests/test_consensus_seq_id.cpp
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</a>
</li>
<li class="file-stats">
<a href="#e0b2f123a81564bf31738653c669118954480d42">
tests/test_getmasked.cpp
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</li>
<li class="file-stats">
<a href="#5e14845d439307e7a73e85d110f0b545b6265fa9">
tests/test_primer_trim.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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