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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/cct">Debian Med / cct</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/394d407f17a2b30e84e18e3d8b548736bdad9164">394d407f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-16T10:15:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Depends: ncbi-blast+-legacy
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/004e966da7f3f795ba4431e2eb7793eba2fc9157">004e966d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-16T10:15:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/f17e2911db95e570706c99c133097079f471d409">f17e2911</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-16T10:15:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/7124766f42c407632d735a01be2b5cb8f7ccd48c">7124766f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-16T10:15:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/44cf13e3000a4e411b1014b40d085be2437a9e42">44cf13e3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-16T10:15:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/b43e563f7feb2c93510868b0b3b327051e6d4c96">b43e563f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-16T10:15:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/f624c08839c4973bf9c63bd19f4edf3287c4681b">f624c088</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-16T10:27:07+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Depends: imagemagick | graphicsmagick
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/6fddac43827742677c5f290b7a34c0a83bf54422">6fddac43</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-16T10:48:58+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Depends: perl-modules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cct/-/commit/dc97af44438453df72455f135a395fce316316b2">dc97af44</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-16T11:05:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Install scripts where these are expected by the main procedures
</pre>
</li>
</ul>
<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c6a2afe7e632a7329aaaaacffa5a403bfa93fe2">
debian/cct.install
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c6a2afe7e632a7329aaaaacffa5a403bfa93fe2">
<a href="https://salsa.debian.org/med-team/cct/-/compare/d9a55e9191928bf639c2358b991d8e76d10e3af9...dc97af44438453df72455f135a395fce316316b2#9c6a2afe7e632a7329aaaaacffa5a403bfa93fe2"><strong>debian/cct.install</strong></a>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1" class="line" lang="php"><span class="nx">scripts</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">cct</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scripts</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">cct</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="php"><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scripts</span><span class="o" style="font-weight: 600;"><span class="idiff left right">/*</span></span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">cct</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scripts</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">cct</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="php"><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">perl_modules</span><span class="o" style="font-weight: 600;">/</span><span class="nx">Util</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">perl5</span></span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="php"><span class="nx">conf</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">etc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">cct</span></span></pre>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/cct/-/compare/d9a55e9191928bf639c2358b991d8e76d10e3af9...dc97af44438453df72455f135a395fce316316b2#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">cct (20170919+dfsg-2) UNRELEASED; urgency=medium</span>
</pre>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Depends: ncbi-blast+-legacy, imagemagick | graphicsmagick, perl-modules</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Standards-Version: 4.5.0 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Remove trailing whitespace in debian/copyright (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 16 Oct 2020 10:15:34 +0200</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">cct (20170919+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Initial release (Closes: #908069)</span>
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<a href="https://salsa.debian.org/med-team/cct/-/compare/d9a55e9191928bf639c2358b991d8e76d10e3af9...dc97af44438453df72455f135a395fce316316b2#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<a href="https://salsa.debian.org/med-team/cct/-/compare/d9a55e9191928bf639c2358b991d8e76d10e3af9...dc97af44438453df72455f135a395fce316316b2#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,18 +3,22 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 11~</span>)</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2.1</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 13</span>)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5.0</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/cct</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/cct.git</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Homepage: http://stothard.afns.ualberta.ca/downloads/CCT/</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Package: cct</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Depends: ${perl:Depends},</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> bioperl,</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> cgview</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> cgview,</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> ncbi-blast+-legacy,</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> imagemagick | graphicsmagick,</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> perl-modules</span>
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18
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Description: visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences</span>
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19
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> The CGView Comparison Tool (CCT) is a package for visually comparing</span>
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20
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> bacterial, plasmid, chloroplast, or mitochondrial sequences of interest</span>
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<a href="https://salsa.debian.org/med-team/cct/-/compare/d9a55e9191928bf639c2358b991d8e76d10e3af9...dc97af44438453df72455f135a395fce316316b2#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,7 +3,7 @@ Upstream-Name: CGView Comparison Tool</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Upstream-Contact: kommadat@ualberta.ca</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Paul Stothard <stothard@ualberta.ca></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Source: http://www.ualberta.ca/~stothard/downloads/cgview_comparison_tool.zip</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Files-Excluded: */*.jar */bioperl*<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Files-Excluded: */*.jar */bioperl*</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Copyright: 2011-2017 Paul Stothard <stothard@ualberta.ca>,</span>
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<a href="https://salsa.debian.org/med-team/cct/-/compare/d9a55e9191928bf639c2358b991d8e76d10e3af9...dc97af44438453df72455f135a395fce316316b2#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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