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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/last-align">Debian Med / last-align</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/-/commit/c9d42e75ce7ce339def7b66acec4b81d0876b429">c9d42e75</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-10-17T13:16:16+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1133</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/-/commit/716b982a2fb72fcf4f41681d6c102750016ec147">716b982a</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-10-17T13:16:16+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/-/commit/163ca1b157b65947a5cd0be410779a6fd8c50ee5">163ca1b1</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-10-17T13:16:19+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1133'
Update to upstream version '1133'
with Debian dir bff95b435ee9b5cfb21611ed52fcf7f4fd370f75</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/-/commit/d6b81af6c429d70a7da50e312c7fd2e1e2740b29">d6b81af6</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-10-17T13:20:08+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/-/commit/d6f8dcc9f61aa96a2437138eab65296dd5363455">d6f8dcc9</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-10-17T13:20:28+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#57bf262130f956caf76c405086f0815caf4e0a89">
ChangeLog.txt
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
debian/patches/2to3.patch
</a>
</li>
<li class="file-stats">
<a href="#13e05e0a09c136beb579852e8d3072cb5f2a590c">
debian/patches/fix-959866.patch
</a>
</li>
<li class="file-stats">
<a href="#3aa5932f37417bf29a460d19625313d84f634221">
debian/patches/helpMakefiles.patch
</a>
</li>
<li class="file-stats">
<a href="#4c0e18367b4a4c2fb5a4fb13dd30c8d2df5876b2">
debian/patches/simde
</a>
</li>
<li class="file-stats">
<a href="#d6f8248b8a5e868eac831cf1a35c8543f1fff6a8">
scripts/last-dotplot
</a>
</li>
<li class="file-stats">
<a href="#5e55dbeefff2057b414960d9467d183920e31b8a">
src/Alignment.cc
</a>
</li>
<li class="file-stats">
<a href="#bd17e03c676d289c9cc5bb117da6d9d2bde74764">
src/Alignment.hh
</a>
</li>
<li class="file-stats">
<a href="#8758dc959aa5524be83960d0bfd56945bc432a26">
src/AlignmentWrite.cc
</a>
</li>
<li class="file-stats">
<a href="#d0552713235c86a577163a3f58b56207610ad394">
src/CyclicSubsetSeed.cc
</a>
</li>
<li class="file-stats">
<a href="#38e88d72aa956d3886597351d58b37469947a653">
src/CyclicSubsetSeed.hh
</a>
</li>
<li class="file-stats">
<a href="#8f014a93cf121af8fe88d03244d4d4b173d32a6d">
src/GappedXdropAligner.cc
</a>
</li>
<li class="file-stats">
<a href="#7dc5c3172a020d4f7642b87bcfe987675bd222a7">
src/GappedXdropAligner.hh
</a>
</li>
<li class="file-stats">
<a href="#30d72e7e81ec011dcda59c2395cb78f718d054e4">
src/GappedXdropAligner2qual.cc
</a>
</li>
<li class="file-stats">
<a href="#aa38e532f19f245fda3e2e3b5a4ac462598ab91f">
<span class="new-file">
+
src/GappedXdropAlignerFrame.cc
</span>
</a>
</li>
<li class="file-stats">
<a href="#0dc2fc6ce4e90db3e92c8d5394d9fff8563e7f2a">
src/GappedXdropAlignerInl.hh
</a>
</li>
<li class="file-stats">
<a href="#35f9fe39feef01a50cdd57a941b460c37cbaffba">
src/GappedXdropAlignerPssm.cc
</a>
</li>
<li class="file-stats">
<a href="#651801b243983c0404fde32d39e03c30a9dd0adc">
src/GeneticCode.cc
</a>
</li>
<li class="file-stats">
<a href="#3c0366b16bdb441bbd5135e07608d67f42e74a37">
src/GeneticCode.hh
</a>
</li>
<li class="file-stats">
<a href="#5f9dbaf068df9da9d036ea6546a588a0c71778be">
src/LastEvaluer.cc
</a>
</li>
<li class="file-stats">
<a href="#8ad69f8f5b121bdf5620a1b9db78266650ef63ed">
src/LastEvaluer.hh
</a>
</li>
<li class="file-stats">
<a href="#4b7be8c3b80efc62977b307791d1a304c23e1fa4">
src/LastalArguments.cc
</a>
</li>
<li class="file-stats">
<a href="#c41d15f61c8e13ecbdb96a800b59fc069d2c6695">
src/LastalArguments.hh
</a>
</li>
<li class="file-stats">
<a href="#7e02f07907d04e1c14dd8cbe36e5ca852897fb6b">
src/ScoreMatrix.cc
</a>
</li>
<li class="file-stats">
<a href="#1abcf9a223f6f347de8e1e1bd3495e4900285b34">
src/ScoreMatrix.hh
</a>
</li>
<li class="file-stats">
<a href="#dfce2568fc6cc43ff1901906cedd463b1de40be4">
src/ScoreMatrixRow.hh
</a>
</li>
<li class="file-stats">
<a href="#cd02526d366c6da910b92885df9a61de1e0d3b4c">
src/SegmentPair.cc
</a>
</li>
<li class="file-stats">
<a href="#8f3dcb98b241f5b872730585aeca6294b7f859bc">
src/SegmentPair.hh
</a>
</li>
<li class="file-stats">
<a href="#a769b4c6047b484a507a8d8b92ec8a622dc48140">
src/SubsetSuffixArraySearch.cc
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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