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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/95d51c05bc5f061ba34135fa7c36c9d393bf87ff">95d51c05</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-25T13:46:25+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/95d51c05bc5f061ba34135fa7c36c9d393bf87ff#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 25 Oct 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 25 Oct 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">4</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">4</span> | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">7</span> | {practice,covid-19,his,oncology,imaging,laboratory} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">3</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">3</span> | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">6</span> | {practice,covid-19,his,oncology,imaging,laboratory} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">7</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> htsjdk | 35 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dicomscope | 33 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicom3tools | 32 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dicomscope | 32 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dcm2niix | 21 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gdcm | 18 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> g<span class="idiff left right">dcm | 16 | {imaging-dev} </span> | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> g<span class="idiff left right">numed-server | 16 | {practice,covid-19}</span> | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> ngs-sdk | 1<span class="idiff left right">6</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> g<span class="idiff left right">numed-server | 17 | {practice,covid-19}</span> | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> g<span class="idiff left right">dcm | 15 | {imaging-dev} </span> | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> ngs-sdk | 1<span class="idiff left right">5</span> | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> invesalius | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> minc-tools | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> biosig | 13 | {imaging,physics} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> nifticlib | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> insighttoolkit4 | 1<span class="idiff left right">0</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> ngs-sdk | 1<span class="idiff left right">0</span> | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> nifticlib | 1<span class="idiff left right">0</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> insighttoolkit4 | 1<span class="idiff left right">1</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> ngs-sdk | 1<span class="idiff left right">1</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> nifticlib | 1<span class="idiff left right">1</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> plastimatch | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> vtk-dicom | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> adun.app | 9 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -34,7 +34,6 @@ Last-Update: Sun, 25 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> dicompyler | 7 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> ea-utils | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> orthanc-webviewer | 7 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> bart-view | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> biojava-live | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> biomaj3-cli | 6 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> jebl2 | 6 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -44,6 +43,7 @@ Last-Update: Sun, 25 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> salmon | 6 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> stacks | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> anfo | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> bart-view | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> fastlink | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> libsbml | 5 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -51,6 +51,7 @@ Last-Update: Sun, 25 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> ngs-sdk | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> orthanc-dicomweb | 5 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> sibsim4 | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> treeview | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> alter-sequence-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> assemblytics | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> beast-mcmc | 4 | {bio-phylogeny,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -69,6 +70,7 @@ Last-Update: Sun, 25 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> libminc | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> libncl | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> mrs | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> phast | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> phyutility | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -80,7 +82,6 @@ Last-Update: Sun, 25 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> soapsnp | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> spread-phy | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> treeview | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> yaha | 4 | {bio} | </span>
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86
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> arden | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> bamkit | 3 | {covid-19,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -97,8 +98,8 @@ Last-Update: Sun, 25 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> mauve-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> mhap | 3 | {bio,bio-ngs} | </span>
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100
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> microbegps | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="plaintext"> mrs | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> murasaki | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> neobio | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> orthanc-mysql | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> orthanc-postgresql | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> papyrus | 3 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -131,7 +132,6 @@ Last-Update: Sun, 25 Oct 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> libpal-java | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="plaintext"> neobio | 2 | {bio,cloud} | </span>
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135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> nutsqlite | 2 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> oscar | 2 | {data,practice,tools} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> pbdagcon | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -151,6 +151,7 @@ Last-Update: Sun, 25 Oct 2020 01:42:04 +0000</td>
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> bbmap | 1 | {bio,covid-19} | </span>
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> biosig | 1 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> blasr | 1 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> bustools | 1 | {bio,covid-19} | </span>
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156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> ctn | 1 | {imaging-dev} | </span>
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> cufflinks | 1 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -166,11 +167,11 @@ Last-Update: Sun, 25 Oct 2020 01:42:04 +0000</td>
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166
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167
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> pique | 1 | {bio} | </span>
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167
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> plasmidid | 1 | {covid-19,bio} | </span>
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168
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> pplacer | 1 | {bio,bio-phylogeny,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="plaintext"> q2templates | 1 | {bio} | </span>
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170
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> sambamba | 1 | {bio} | </span>
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171
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> samtools-legacy | 1 | {bio-dev} | </span>
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172
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> scrappie | 1 | {covid-19,bio} | </span>
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> seqan | 1 | {bio-dev} | </span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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174
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175
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> simpleitk | 1 | {imaging-dev} | </span>
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175
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176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> skewer | 1 | {bio} | </span>
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176
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177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> spaln | 1 | {bio,covid-19} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -184,7 +185,6 @@ Last-Update: Sun, 25 Oct 2020 01:42:04 +0000</td>
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184
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> biojava4-live | 0 | {bio-dev} | </span>
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185
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> biosig | 0 | {physics} | </span>
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186
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> biosyntax | 0 | {bio} | </span>
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187
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="plaintext"> blimps | 0 | {bio} | </span>
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188
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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189
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189
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> concurrentqueue | 0 | {bio-dev} | </span>
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190
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190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> conda-package-handling | 0 | {bio,bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -234,9 +234,9 @@ Last-Update: Sun, 25 Oct 2020 01:42:04 +0000</td>
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234
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234
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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235
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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236
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> pigx-rnaseq | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext"> q2templates | 0 | {bio} | </span>
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238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC239" class="line" lang="plaintext"> sift | 0 | {bio} | </span>
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240
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> sight | 0 | {imaging-dev} | </span>
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241
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241
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> simpleitk | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> smrtanalysis | 0 | {bio,covid-19} | </span>
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