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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/scrappie">Debian Med / scrappie</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/scrappie/-/commit/91e14a178cf86ca56a823a8f7f95628cabda2798">91e14a17</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2020-10-25T21:23:43+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove useless test erroneously copied
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<strong><a href="https://salsa.debian.org/med-team/scrappie/-/commit/e095d7fc493927356f2d3d2fd7b1fbdc52638af7">e095d7fc</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2020-10-25T21:24:37+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add myself to uploaders
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<h4>2 changed files:</h4>
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#ac56e5cfa5a475febd17cd706f219a2cedec85e5">
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−
debian/tests/simple_test.py
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/scrappie/-/compare/a973b0d3f3f93bd5df3b3a9898c1de58fa395d1a...e095d7fc493927356f2d3d2fd7b1fbdc52638af7#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,7 @@ Source: scrappie</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">Uploaders: Steffen Moeller <moeller@debian.org></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Uploaders: Steffen Moeller <moeller@debian.org><span class="idiff left right">, Nilesh Patra <npatra974@gmail.com></span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> libcunit1-dev,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> libhdf5-dev,</span>
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<li id="ac56e5cfa5a475febd17cd706f219a2cedec85e5">
<a href="https://salsa.debian.org/med-team/scrappie/-/compare/a973b0d3f3f93bd5df3b3a9898c1de58fa395d1a...e095d7fc493927356f2d3d2fd7b1fbdc52638af7#ac56e5cfa5a475febd17cd706f219a2cedec85e5"><strong>debian/tests/simple_test.py</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">dnapilib.apred</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">adapter_prediction</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">dnapilib.apred</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">iterative_adapter_prediction</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_functional</span><span class="p">():</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="python"> <span class="n" style="color: #333;">iterative_result</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">iterative_adapter_prediction</span><span class="p">(</span><span class="s" style="color: #d14;">"good.fq"</span><span class="p">,</span> <span class="p">[</span><span class="mf" style="color: #099;">1.2</span><span class="p">,</span> <span class="mf" style="color: #099;">1.3</span><span class="p">,</span> <span class="mf" style="color: #099;">1.4</span><span class="p">],</span> <span class="p">[</span><span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="mi" style="color: #099;">11</span><span class="p">],</span> <span class="mi" style="color: #099;">50000</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="python"> <span class="n" style="color: #333;">single_result</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">adapter_prediction</span><span class="p">(</span><span class="s" style="color: #d14;">"good.fq"</span><span class="p">,</span> <span class="mf" style="color: #099;">1.4</span><span class="p">,</span> <span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="mi" style="color: #099;">50000</span><span class="p">)</span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">(</span><span class="n" style="color: #333;">iterative_result</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">][</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'TGGAATTCTCGG'</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">(</span><span class="n" style="color: #333;">single_result</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">][</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'TGGAATTCTCGGGTGCCAAGGAACTCC'</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="python"> <span class="n" style="color: #333;">iterative_result</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">iterative_adapter_prediction</span><span class="p">(</span><span class="s" style="color: #d14;">"processed.fq"</span><span class="p">,</span> <span class="p">[</span><span class="mf" style="color: #099;">1.2</span><span class="p">,</span> <span class="mf" style="color: #099;">1.3</span><span class="p">,</span> <span class="mf" style="color: #099;">1.4</span><span class="p">],</span> <span class="p">[</span><span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="mi" style="color: #099;">11</span><span class="p">],</span> <span class="mi" style="color: #099;">50000</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="python"> <span class="n" style="color: #333;">single_result</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">adapter_prediction</span><span class="p">(</span><span class="s" style="color: #d14;">"processed.fq"</span><span class="p">,</span> <span class="mf" style="color: #099;">1.4</span><span class="p">,</span> <span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="mi" style="color: #099;">50000</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="python"></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">([</span><span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">x</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">iterative_result</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">[</span><span class="s" style="color: #d14;">'TCTGCCCAGTGCTCTG'</span><span class="p">,</span> <span class="s" style="color: #d14;">'TAATACTGCCTG'</span><span class="p">,</span> <span class="s" style="color: #d14;">'TGGCAGTGTCTT'</span><span class="p">])</span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span><span class="p">([</span><span class="n" style="color: #333;">x</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">x</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">single_result</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="p">[</span><span class="s" style="color: #d14;">'TAATACTGCCTGGTAATGATG'</span><span class="p">,</span> <span class="s" style="color: #d14;">'TGGCAGTGTCTTAGCTGGTTG'</span><span class="p">,</span> <span class="s" style="color: #d14;">'CTGCCCAGTGCTCTGAA'</span><span class="p">])</span></span></pre>
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