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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/742d181dfc9e45bab1435db725ee6bdb3d41548d">742d181d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-26T13:45:12+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/742d181dfc9e45bab1435db725ee6bdb3d41548d#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 26 Oct 2020 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 26 Oct 2020 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> dcmtk | 173 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">3</span> | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">2</span> | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 46 | {practice,covid-19,his,oncology,imaging,laboratory} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">7</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">9</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> htsjdk | 35 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dicomscope | 33 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dicom3tools | 32 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dicomscope | 31 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dcm2niix | 21 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">8</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">7</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> gnumed-server | 17 | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gdcm | 15 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> ngs-sdk | 15 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> biosig | 14 | {imaging,physics} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> invesalius | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> minc-tools | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> biosig | 13 | {imaging,physics} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> nifticlib | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> nifticlib | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> insighttoolkit4 | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> ngs-sdk | 11 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> nifticlib | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> plastimatch | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> vtk-dicom | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> nifticlib | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> adun.app | 9 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> insighttoolkit4 | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> king | 9 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> librg-utils-perl | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> obitools | 9 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> plastimatch | 9 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> vtk-dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> openslide | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> staden | 8 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -38,18 +38,17 @@ Last-Update: Mon, 26 Oct 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> biomaj3-cli | 6 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> jebl2 | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> multiqc | 6 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> ngs-sdk | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> predictprotein | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> pymia | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> salmon | 6 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> stacks | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> anfo | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> bart-view | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> fastlink | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> libsbml | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> mipe | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> ngs-sdk | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> orthanc-dicomweb | 5 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> salmon | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> sibsim4 | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> treeview | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> alter-sequence-alignment | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -70,13 +69,13 @@ Last-Update: Mon, 26 Oct 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> libminc | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> libncl | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> libsbml | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> mrs | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> phast | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> phyutility | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> placnet | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> prime-phylo | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="plaintext"> radiant | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> rambo-k | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> seqsero | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> soapsnp | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -102,13 +101,13 @@ Last-Update: Mon, 26 Oct 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> neobio | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> orthanc-mysql | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> orthanc-postgresql | 3 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="plaintext"> papyrus | 3 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> paraclu | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> perm | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> phybin | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> plasmidseeker | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> pscan-chip | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> quorum | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"> radiant | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> rtax | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> saint | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> samblaster | 3 | {bio,covid-19} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -134,6 +133,7 @@ Last-Update: Mon, 26 Oct 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> nutsqlite | 2 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> oscar | 2 | {data,practice,tools} | </span>
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext"> papyrus | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> pbdagcon | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> pilercr | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> proalign | 2 | {bio,bio-phylogeny} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -169,7 +169,6 @@ Last-Update: Mon, 26 Oct 2020 01:42:03 +0000</td>
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> pplacer | 1 | {bio,bio-phylogeny,covid-19} | </span>
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170
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> sambamba | 1 | {bio} | </span>
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> samtools-legacy | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="plaintext"> scrappie | 1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> seqan | 1 | {bio-dev} | </span>
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174
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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175
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174
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> simpleitk | 1 | {imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -239,6 +238,7 @@ Last-Update: Mon, 26 Oct 2020 01:42:03 +0000</td>
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239
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238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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240
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239
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> sight | 0 | {imaging-dev} | </span>
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240
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> simpleitk | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="plaintext"> simrisc | 0 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> smrtanalysis | 0 | {bio,covid-19} | </span>
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243
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -246,5 +246,5 @@ Last-Update: Mon, 26 Oct 2020 01:42:03 +0000</td>
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246
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> orthanc-python | -1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> shovill | -1 | {bio,covid-19} | </span>
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> svim | -1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC249" class="line" lang="plaintext">(27<span class="idiff left right">3</span> rows)</span>
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249
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="plaintext">(27<span class="idiff left right">4</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"></span></pre>
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