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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/libseqlib">Debian Med / libseqlib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libseqlib/-/commit/0151f502ad343c304d968de536defa3856529bac">0151f502</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-10-26T16:47:44+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">more symbols updates
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libseqlib/-/commit/145698313ed66833dc69862460bc87366ba0b417">14569831</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-10-26T16:51:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Mark most of Debian's patches as not appropriate for forwarding to upstream.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libseqlib/-/commit/6cb334050d63d90bb8dcece24a62205fe1dacf73">6cb33405</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-10-26T16:52:14+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release 1.1.2+dfsg-9
</pre>
</li>
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<h4>11 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#f5558833742302653c99a42f8d1dbba987cbc288">
debian/libseqlib1.symbols
</a>
</li>
<li class="file-stats">
<a href="#a6d48c845db44214d4c06ec11a3f09515d155e6e">
debian/patches/adapt_to_debian_fermi-lite.patch
</a>
</li>
<li class="file-stats">
<a href="#88fc8c6a50e2a0c0769f24498b3f64d5cf60081f">
debian/patches/dynamic_lib.patch
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</li>
<li class="file-stats">
<a href="#1d2e918f1df29ca1c89a97caa7ad4613935dbdc2">
debian/patches/fix_fermi-lite_usage.patch
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<li class="file-stats">
<a href="#823d6ed0a9fbf3e9fd189294deb7b2d4411b6446">
debian/patches/fix_htslib_usage.patch
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<li class="file-stats">
<a href="#a747e101e62b200a112a8777b6ccb650cd6d0666">
debian/patches/fml_include_path.patch
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<li class="file-stats">
<a href="#e130d9656dd0d27ca046c85ad7aee53a453014fe">
debian/patches/use_debian_packaged_jsoncpp.patch
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</li>
<li class="file-stats">
<a href="#ee54dc79014b3def963898e50c98877d46c6b27e">
debian/patches/use_debian_packaged_libs.patch
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<li class="file-stats">
<a href="#2bade74bb4b81285c9b441bd946a0342be3e9737">
debian/patches/use_debian_packaged_ssw.patch
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</li>
<li class="file-stats">
<a href="#dd6cf73c99414c5c542bab813e94a558066682ce">
debian/patches/use_private_htslib_headers.patch
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</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/libseqlib/-/compare/2e4489a4e15ab0ac2baa50e1ee9382299408a150...6cb334050d63d90bb8dcece24a62205fe1dacf73#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libseqlib (1.1.2+dfsg-9) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * More symbols updates.</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Mark most of Debian's patches as not appropriate for forwarding to</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> upstream.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Michael R. Crusoe <crusoe@debian.org> Mon, 26 Oct 2020 16:51:53 +0100</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">libseqlib (1.1.2+dfsg-8) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Team upload.</span>
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<li id="f5558833742302653c99a42f8d1dbba987cbc288">
<a href="https://salsa.debian.org/med-team/libseqlib/-/compare/2e4489a4e15ab0ac2baa50e1ee9382299408a150...6cb334050d63d90bb8dcece24a62205fe1dacf73#f5558833742302653c99a42f8d1dbba987cbc288"><strong>debian/libseqlib1.symbols</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext"># SymbolsHelper-Confirmed: 1.1.2 a<span class="idiff left right">md64 arm64 armel armhf i386 ia64 kfreebsd-amd64 m68k mips64el mipsel ppc64el riscv64 sh</span>4 x32</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"># SymbolsHelper-Confirmed: 1.1.2 a<span class="idiff left right">lpha amd64 arm64 armel armhf i386 ia64 kfreebsd-amd64 m68k mips64el mipsel powerpc ppc64 ppc64el riscv64 s390x sh4 sparc6</span>4 x32</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">libseqlib.so.1 libseqlib1 #MINVER#</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">* Build-Depends-Package: libseqlib-dev</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> (optional=templinst)_ZN12aho_corasick10basic_trieIcE10parse_textENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.2</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,7 +32,7 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> _ZN6SeqLib11FastqReader4OpenERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> _ZN6SeqLib11FastqReaderC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> _ZN6SeqLib11FastqReaderC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> (arch=amd64)_ZN6SeqLib11scrubStringERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> (arch=amd64<span class="idiff left right"> arm64 armel armhf x32</span>)_ZN6SeqLib11scrubStringERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> _ZN6SeqLib13GenomicRegion3PadEi@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> _ZN6SeqLib13GenomicRegionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> _ZN6SeqLib13GenomicRegionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_S8_RKNS_9BamHeaderE@Base 1.1.2</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -66,9 +66,6 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE13CreateTreeMapEv@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE14CoordinateSortEv@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE25MergeOverlappingIntervalsEv@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="plaintext"> (optional=templinst|arch=!amd64)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE6ConcatERKS2_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> (optional=templinst|arch=!amd64)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE7ReadBEDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> (optional=templinst|arch=!amd64)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE7ReadVCFERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1Ev@Base 1.1.2</span>
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71
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> (optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.2</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -86,8 +83,8 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> _ZN6SeqLib4_Bam20open_BAM_for_readingEv@Base 1.1.2</span>
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84
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> _ZN6SeqLib4_Bam9SetRegionERKNS_13GenomicRegionE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> _ZN6SeqLib4_Bam9load_readERNS_9BamRecordE@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> <span class="idiff left right">(arch=amd64)</span>_ZN6SeqLib4_BamC1ERKS0_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> <span class="idiff left right">(arch=amd64)</span>_ZN6SeqLib4_BamC2ERKS0_@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> _ZN6SeqLib4_BamC1ERKS0_@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> _ZN6SeqLib4_BamC2ERKS0_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> _ZN6SeqLib4_BamD1Ev@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> _ZN6SeqLib4_BamD2Ev@Base 1.1.2</span>
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90
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> _ZN6SeqLib5CigarC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.2</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -101,17 +98,17 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> _ZN6SeqLib6Filter10ReadFilterD1Ev@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> _ZN6SeqLib6Filter10ReadFilterD2Ev@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> _ZN6SeqLib6Filter11AhoCorasick12TrieFromFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="plaintext"> _ZN6SeqLib6Filter11AhoCorasickD1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="plaintext"> _ZN6SeqLib6Filter11AhoCorasickD2Ev@Base 1.1.2</span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"> <span class="idiff left right">(arch=!alpha !mips64el !ppc64 !ppc64el !riscv64 !s390x !sh4 !sparc64)</span>_ZN6SeqLib6Filter11AhoCorasickD1Ev@Base 1.1.2</span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> <span class="idiff left right">(arch=!alpha !mips64el !ppc64 !ppc64el !riscv64 !s390x !sh4 !sparc64)</span>_ZN6SeqLib6Filter11AhoCorasickD2Ev@Base 1.1.2</span>
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103
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> _ZN6SeqLib6Filter12AbstractRule12addMotifRuleERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb@Base 1.1.2</span>
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104
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> _ZN6SeqLib6Filter12AbstractRule12parseSeqLineERKN4Json5ValueE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> _ZN6SeqLib6Filter12AbstractRule12parseSubLineERKN4Json5ValueE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> _ZN6SeqLib6Filter12AbstractRule7isValidERKNS_9BamRecordE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> _ZN6SeqLib6Filter12AbstractRule9parseJsonERKN4Json5ValueE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> _ZN6SeqLib6Filter12AbstractRuleC1ERKS1_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="plaintext"> <span class="idiff left right">(arch=amd64)</span>_ZN6SeqLib6Filter12AbstractRuleC1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"> _ZN6SeqLib6Filter12AbstractRuleC1Ev@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> _ZN6SeqLib6Filter12AbstractRuleC2ERKS1_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="plaintext"> <span class="idiff left right">(arch=amd64)</span>_ZN6SeqLib6Filter12AbstractRuleC2Ev@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> _ZN6SeqLib6Filter12AbstractRuleC2Ev@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> _ZN6SeqLib6Filter12AbstractRuleD1Ev@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> _ZN6SeqLib6Filter12AbstractRuleD2Ev@Base 1.1.2</span>
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114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> _ZN6SeqLib6Filter15convert_to_boolERKN4Json5ValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.2</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -120,7 +117,7 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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120
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117
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> _ZN6SeqLib6Filter20ReadFilterCollectionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.2</span>
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121
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118
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> _ZN6SeqLib6Filter20ReadFilterCollectionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.2</span>
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122
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119
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> _ZN6SeqLib6Filter4Flag9parseJsonERKN4Json5ValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.2</span>
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123
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="plaintext"> <span class="idiff left right">(arch=amd64)</span>_ZN6SeqLib6Filter5Range7isValidEi@Base 1.1.2</span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> _ZN6SeqLib6Filter5Range7isValidEi@Base 1.1.2</span>
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124
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121
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> _ZN6SeqLib6Filter5Range9parseJsonERKN4Json5ValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.2</span>
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125
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122
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> _ZN6SeqLib6Filter8FlagRule14parse_json_intERKN4Json5ValueE@Base 1.1.2</span>
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126
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123
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> _ZN6SeqLib6Filter8FlagRule7isValidERKNS_9BamRecordE@Base 1.1.2</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -132,7 +129,7 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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132
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> _ZN6SeqLib6FilterlsERSoRKNS0_8FlagRuleE@Base 1.1.2</span>
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133
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130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> (optional=templinst)_ZN6SeqLib8tostringIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 1.1.2</span>
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134
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> (optional=templinst)_ZN6SeqLib8tostringIjEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 1.1.2</span>
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135
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="plaintext"> (optional=templinst<span class="idiff left right">|arch=amd64 arm64 ia64 kfreebsd-amd64 mips64el ppc64el riscv64</span>)_ZN6SeqLib9AddCommasIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 1.1.2</span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> (optional=templinst)_ZN6SeqLib9AddCommasIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 1.1.2</span>
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136
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133
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> _ZN6SeqLib9BamHeader21ConstructName2IDTableEv@Base 1.1.2</span>
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137
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134
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> _ZN6SeqLib9BamHeaderC1EPK9sam_hdr_t@Base 1.1.2</span>
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138
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135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> _ZN6SeqLib9BamHeaderC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.2</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -179,7 +176,7 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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179
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176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> _ZN6SeqLiblsERSoRKNS_10BWAWrapperE@Base 1.1.2</span>
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180
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177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> _ZN6SeqLiblsERSoRKNS_10CigarFieldE@Base 1.1.2</span>
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181
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178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> _ZN6SeqLiblsERSoRKNS_13GenomicRegionE@Base 1.1.2</span>
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182
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="plaintext"> <span class="idiff left right">(arch=amd64)</span>_ZN6SeqLiblsERSoRKNS_15PlottedReadLineE@Base 1.1.2</span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"> _ZN6SeqLiblsERSoRKNS_15PlottedReadLineE@Base 1.1.2</span>
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<td class="diff-line-num old_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
183
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> _ZN6SeqLiblsERSoRKNS_5CigarE@Base 1.1.2</span>
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184
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> _ZN6SeqLiblsERSoRKNS_9BamReaderE@Base 1.1.2</span>
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<td class="diff-line-num old_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
185
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<td class="diff-line-num new_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
182
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> _ZN6SeqLiblsERSoRKNS_9BamRecordE@Base 1.1.2</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="228" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -231,7 +228,7 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
231
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228
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> _ZNK6SeqLib9BamRecord11CountNBasesEv@Base 1.1.2</span>
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<td class="diff-line-num old_line" data-linenumber="232" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
232
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229
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> _ZNK6SeqLib9BamRecord11PositionEndEv@Base 1.1.2</span>
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233
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230
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> _ZNK6SeqLib9BamRecord14GetSmartIntTagERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.2</span>
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234
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<pre style="margin: 0;">-<span id="LC234" class="line" lang="plaintext"> <span class="idiff left right">(arch=amd64)</span>_ZNK6SeqLib9BamRecord14ParseReadGroupB5cxx11Ev@Base 1.1.2</span>
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231
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="plaintext"> _ZNK6SeqLib9BamRecord14ParseReadGroupB5cxx11Ev@Base 1.1.2</span>
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235
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232
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> _ZNK6SeqLib9BamRecord15AsGenomicRegionEv@Base 1.1.2</span>
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236
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233
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> _ZNK6SeqLib9BamRecord15PairOrientationEv@Base 1.1.2</span>
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237
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234
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> _ZNK6SeqLib9BamRecord15PositionEndMateEv@Base 1.1.2</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -254,44 +251,33 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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254
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> (optional=templinst)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE5countERS7_@Base 1.1.2</span>
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255
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252
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> (optional=templinst|subst)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeE{size_t}RS7_{size_t}@Base 1.1.2</span>
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256
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253
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> (optional=templinst)_ZNKSt5ctypeIcE8do_widenEc@Base 1.1.2</span>
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257
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<pre style="margin: 0;">-<span id="LC257" class="line" lang="plaintext"> (optional=templinst|arch=!amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE10_M_emplaceIJS6_IS5_S9_EEEES6_INSC_14_Node_iteratorISA_Lb0ELb1EEEbESt17integral_constantIbLb1EEDpOT_@Base 1.1.2</span>
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258
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<pre style="margin: 0;">-<span id="LC258" class="line" lang="plaintext"> (optional=templinst|arch=amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC259" class="line" lang="plaintext"> (optional=templinst|arch=amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD2Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC260" class="line" lang="plaintext"> (optional=templinst|subst|arch=!amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE21_M_insert_unique_nodeE{size_t}{size_t}PNSC_10_Hash_nodeISA_Lb1EEE{size_t}@Base 1.1.2</span>
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261
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<pre style="margin: 0;">-<span id="LC261" class="line" lang="plaintext"> (optional=templinst|subst|arch=!amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashE{size_t}RK{size_t}@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC262" class="line" lang="plaintext"> (optional=templinst|arch=arm64 kfreebsd-amd64 x32)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE10_M_emplaceIJS6_IS5_iEEEES6_INSA_14_Node_iteratorIS8_Lb0ELb1EEEbESt17integral_constantIbLb1EEDpOT_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC263" class="line" lang="plaintext"> (optional=templinst|arch=amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE5clearEv@Base 1.1.2</span>
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254
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="plaintext"> (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="plaintext"> (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD2Ev@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="plaintext"> (optional=templinst|arch=kfreebsd-amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE10_M_emplaceIJS6_IS5_iEEEES6_INSA_14_Node_iteratorIS8_Lb0ELb1EEEbESt17integral_constantIbLb1EEDpOT_@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="plaintext"> (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE5clearEv@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="plaintext"> (optional=templinst|subst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashE{size_t}RK{size_t}@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC265" class="line" lang="plaintext"> (optional=templinst|arch=!amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC266" class="line" lang="plaintext"> (optional=templinst|arch=!amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEED2Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC267" class="line" lang="plaintext"> (optional=templinst|arch=armel armhf m68k)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIijEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE21_M_insert_unique_nodeEjjPNS7_10_Hash_nodeIS5_Lb0EEEj@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="plaintext"> (optional=templinst|arch=amd64)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC269" class="line" lang="plaintext"> (optional=templinst|arch=amd64)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD2Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="plaintext"> (optional=templinst|arch=ia64 mips64el ppc64el riscv64)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE21_M_insert_unique_nodeEmmPNS7_10_Hash_nodeIS5_Lb0EEEm@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="plaintext"> (optional=templinst|arch=amd64)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE4findERS1_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="plaintext"> (optional=templinst|arch=arm64 ia64 kfreebsd-amd64 mips64el ppc64el riscv64 sh4 x32|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE10_M_emplaceIJS0_IiS4_EEEES0_INS7_14_Node_iteratorIS5_Lb0ELb0EEEbESt17integral_constantIbLb1EEDpOT_@Base 1.1.2</span>
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259
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="plaintext"> (optional=templinst|arch=kfreebsd-amd64|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE10_M_emplaceIJS0_IiS4_EEEES0_INS7_14_Node_iteratorIS5_Lb0ELb0EEEbESt17integral_constantIbLb1EEDpOT_@Base 1.1.2</span>
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260
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<pre style="margin: 0;">+<span id="LC260" class="line" lang="plaintext"> (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC261" class="line" lang="plaintext"> (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD2Ev@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="plaintext"> (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE4findERS1_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="plaintext"> (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="plaintext"> (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE9_M_rehashE{size_t}RK{size_t}@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="plaintext"> (optional=templinst|subst|arch=!amd64)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="plaintext"> (optional=templinst|subst|arch=!amd64)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED2Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="plaintext"> (optional=templinst|arch=amd64)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIimEESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="plaintext"> (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIi{size_t}EESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="plaintext"> (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIi{size_t}EESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEE9_M_rehashE{size_t}RK{size_t}@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC279" class="line" lang="plaintext"> (optional=templinst|subst|arch=!amd64)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIi{size_t}EESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="plaintext"> (optional=templinst|subst|arch=!amd64)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIi{size_t}EESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEED2Ev@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="plaintext"> (optional=templinst)_ZNSt11_Deque_baseIPN12aho_corasick5stateIcEESaIS3_EED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="plaintext"> (optional=templinst)_ZNSt11_Deque_baseIPN12aho_corasick5stateIcEESaIS3_EED2Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC283" class="line" lang="plaintext"> (optional=templinst<span class="idiff left right">|arch=amd64</span>)_ZNSt12_Vector_baseIN12aho_corasick7ahoemitIcEESaIS2_EED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="plaintext"> (optional=templinst<span class="idiff left right">|arch=amd64</span>)_ZNSt12_Vector_baseIN12aho_corasick7ahoemitIcEESaIS2_EED2Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC285" class="line" lang="plaintext"> (optional=templinst<span class="idiff left right">|arch=amd64</span>)_ZNSt12_Vector_baseIN6SeqLib10CigarFieldESaIS1_EED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="plaintext"> (optional=templinst|<span class="idiff left right">arch=amd64)_ZNSt12_Vector_baseIN6SeqLib9TIntervalIim</span>EESaIS2_EED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="plaintext"> (optional=templinst|<span class="idiff left right">arch=amd64)_ZNSt12_Vector_baseIN6SeqLib9TIntervalIim</span>EESaIS2_EED2Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="plaintext"> (optional=templinst<span class="idiff left right">|arch=amd64</span>)_ZNSt12_Vector_baseIPN12aho_corasick5stateIcEESaIS3_EED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="plaintext"> (optional=templinst<span class="idiff left right">|arch=amd64</span>)_ZNSt12_Vector_baseIPN12aho_corasick5stateIcEESaIS3_EED2Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="plaintext"> (optional=templinst<span class="idiff left right">|arch=amd64</span>)_ZNSt12_Vector_baseIPN6SeqLib11PlottedReadESaIS2_EED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="plaintext"> (optional=templinst<span class="idiff left right">|arch=amd64</span>)_ZNSt12_Vector_baseIPN6SeqLib11PlottedReadESaIS2_EED2Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="plaintext"> (optional=templinst<span class="idiff left right">|arch=amd64</span>)_ZNSt12_Vector_baseIcSaIcEED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="plaintext"> (optional=templinst<span class="idiff left right">|arch=amd64</span>)_ZNSt12_Vector_baseIcSaIcEED2Ev@Base 1.1.2</span>
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269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="plaintext"> (optional=templinst)_ZNSt12_Vector_baseIN12aho_corasick7ahoemitIcEESaIS2_EED1Ev@Base 1.1.2</span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="plaintext"> (optional=templinst)_ZNSt12_Vector_baseIN12aho_corasick7ahoemitIcEESaIS2_EED2Ev@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="plaintext"> (optional=templinst)_ZNSt12_Vector_baseIN6SeqLib10CigarFieldESaIS1_EED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext"> (optional=templinst)_ZNSt12_Vector_baseIN6SeqLib10CigarFieldESaIS1_EED2Ev@Base 1.1.2</span>
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="plaintext"> (optional=templinst|<span class="idiff left right">subst)_ZNSt12_Vector_baseIN6SeqLib9TIntervalIi{size_t}</span>EESaIS2_EED1Ev@Base 1.1.2</span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="plaintext"> (optional=templinst|<span class="idiff left right">subst)_ZNSt12_Vector_baseIN6SeqLib9TIntervalIi{size_t}</span>EESaIS2_EED2Ev@Base 1.1.2</span>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext"> (optional=templinst)_ZNSt12_Vector_baseIPN12aho_corasick5stateIcEESaIS3_EED1Ev@Base 1.1.2</span>
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276
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="plaintext"> (optional=templinst)_ZNSt12_Vector_baseIPN6SeqLib11PlottedReadESaIS2_EED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="plaintext"> (optional=templinst)_ZNSt12_Vector_baseIPN6SeqLib11PlottedReadESaIS2_EED2Ev@Base 1.1.2</span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="plaintext"> (optional=templinst)_ZNSt12_Vector_baseIcSaIcEED1Ev@Base 1.1.2</span>
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280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="plaintext"> (optional=templinst)_ZNSt12_Vector_baseIcSaIcEED2Ev@Base 1.1.2</span>
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281
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="plaintext"> (optional=templinst|arch=armel riscv64)_ZNSt15_Sp_counted_ptrIDnLN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv@Base 1.1.2</span>
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296
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282
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="plaintext"> (optional=templinst|arch=!armel !riscv64)_ZNSt15_Sp_counted_ptrIDnLN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.1.2</span>
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297
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283
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="plaintext"> (optional=templinst|arch=armel riscv64)_ZNSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv@Base 1.1.2</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -352,18 +338,6 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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352
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338
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<pre style="margin: 0;"> <span id="LC338" class="line" lang="plaintext"> (optional=templinst|arch=armel riscv64)_ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE1EE10_M_releaseEv@Base 1.1.2</span>
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353
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339
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<pre style="margin: 0;"> <span id="LC339" class="line" lang="plaintext"> (optional=templinst|arch=!armel !riscv64)_ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.1.2</span>
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354
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340
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<pre style="margin: 0;"> <span id="LC340" class="line" lang="plaintext"> (optional=templinst|arch=!armel !riscv64)_ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_releaseEv@Base 1.1.2</span>
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355
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -388,6 +362,12 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -418,103 +398,71 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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<pre style="margin: 0;"> <span id="LC398" class="line" lang="plaintext"> (optional=templinst|arch=!armel !riscv64)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC421" class="line" lang="plaintext"> (optional=templinst|arch=!amd64)_ZNSt4pairIKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC407" class="line" lang="plaintext"> (optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC408" class="line" lang="plaintext"> (optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EED2Ev@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC409" class="line" lang="plaintext"> (optional=templinst)_ZNSt6vectorIN6SeqLib10CigarFieldESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC410" class="line" lang="plaintext"> (optional=templinst)_ZNSt6vectorIN6SeqLib11PlottedReadESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC436" class="line" lang="plaintext"> (optional=templinst|arch=!amd64)_ZNSt6vectorIN6SeqLib13GenomicRegionESaIS1_EE15_M_range_insertIN9__gnu_cxx17__normal_iteratorIPS1_S3_EEEEvS8_T_S9_St20forward_iterator_tag@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC437" class="line" lang="plaintext"> (optional=templinst|arch=!amd64)_ZNSt6vectorIN6SeqLib13GenomicRegionESaIS1_EE15_M_range_insertISt14_List_iteratorIS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EET_SB_St20forward_iterator_tag@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC411" class="line" lang="plaintext"> (optional=templinst)_ZNSt6vectorIN6SeqLib13GenomicRegionESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC413" class="line" lang="plaintext"> (optional=templinst)_ZNSt6vectorIN6SeqLib14HeaderSequenceESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC414" class="line" lang="plaintext"> (optional=templinst)_ZNSt6vectorIN6SeqLib15PlottedReadLineESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="plaintext"> (optional=templinst)_ZNSt6vectorIN6SeqLib17UnalignedSequenceESaIS1_EED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="plaintext"> (optional=templinst)_ZNSt6vectorIN6SeqLib17UnalignedSequenceESaIS1_EED2Ev@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC418" class="line" lang="plaintext"> (optional=templinst)_ZNSt6vectorIN6SeqLib6Filter10ReadFilterESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC420" class="line" lang="plaintext"> (optional=templinst)_ZNSt6vectorIN6SeqLib9BamRecordESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC448" class="line" lang="plaintext"> (optional=templinst|arch=armel armhf)_ZNSt6vectorIN6SeqLib9TIntervalIijEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC449" class="line" lang="plaintext"> (optional=templinst|arch=a<span class="idiff left right">md64 ppc64el</span>)_ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="plaintext"> (optional=templinst|arch=armel armhf<span class="idiff left right"> i386 m68k mipsel powerpc sh4 x32</span>)_ZNSt6vectorIN6SeqLib9TIntervalIijEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC423" class="line" lang="plaintext"> (optional=templinst|subst)_ZNSt6vectorIN6SeqLib9TIntervalIi{size_t}EESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC437" class="line" lang="plaintext"> (optional=templinst)_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC438" class="line" lang="plaintext"> (optional=templinst)_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC439" class="line" lang="plaintext"> (optional=templinst)_ZNSt7__cxx114listIN6SeqLib13GenomicRegionESaIS2_EE4sortEv@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC475" class="line" lang="plaintext"> (optional=templinst|arch=!amd64)_ZNSt8_Rb_treeIN12aho_corasick7ahoemitIcEES2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC441" class="line" lang="plaintext"> (optional=templinst)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE16_M_insert_uniqueIRKS5_EESt4pairISt17_Rb_tree_iteratorIS5_EbEOT_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC489" class="line" lang="plaintext"> (optional=templinst|subst|arch=!amd64)_ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEE{ssize_t}S4_NS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E0_EEEvT_T0_SL_T1_T2_@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC447" class="line" lang="plaintext"> (optional=templinst|subst)_ZNSt8__detail9_Map_baseIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIi{size_t}EESaIS6_EEESaIS9_ENS_10_Select1stESt8equal_toIiESt4hashIiENS_18_Mod_range_hashingENS_20_Default_ranged_hashENS_20_Prime_rehash_policyENS_17_Hashtable_traitsILb0ELb0ELb1EEELb1EEixERS2_@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC448" class="line" lang="plaintext"> (optional=templinst|arch=amd64 arm64 kfreebsd-amd64 x32)_ZSt11__make_heapIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEENS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E0_EEEvT_SK_RT0_@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC449" class="line" lang="plaintext"> (optional=templinst|arch=amd64 arm64 kfreebsd-amd64 x32)_ZSt11__make_heapIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEENS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E_EEEvT_SK_RT0_@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC452" class="line" lang="plaintext"> (optional=templinst|arch=!amd64 !arm64 !kfreebsd-amd64 !x32)_ZSt13__heap_selectIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEENS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E_EEEvT_SK_SK_T0_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC457" class="line" lang="plaintext"> (optional=templinst|subst)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEE{ssize_t}NS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E_EEEvT_SK_T0_T1_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC458" class="line" lang="plaintext"> (optional=templinst|subst)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPN6SeqLib9TIntervalIi{size_t}EESt6vectorIS4_SaIS4_EEEE{ssize_t}NS0_5__ops15_Iter_comp_iterINS2_19IntervalStartSorterIi{size_t}EEEEEvT_SF_T0_T1_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC503" class="line" lang="plaintext"> (optional=templinst|arch=i386 m68k mipsel)_ZSt22__final_insertion_sortIN9__gnu_cxx17__normal_iteratorIPN6SeqLib9TIntervalIijEESt6vectorIS4_SaIS4_EEEENS0_5__ops15_Iter_comp_iterINS2_19IntervalStartSorterIijEEEEEvT_SF_T0_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC504" class="line" lang="plaintext"> (optional=templinst|arch=!amd64)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIPN6SeqLib13GenomicRegionESt6vectorIS3_SaIS3_EEEENS0_5__ops15_Iter_less_iterEEvT_SB_SB_SB_T0_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC505" class="line" lang="plaintext"> (optional=templinst|subst|arch=!amd64 !armel !armhf !ia64 !mips64el !ppc64el !riscv64 !x32)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIPN6SeqLib9TIntervalIi{size_t}EESt6vectorIS4_SaIS4_EEEENS0_5__ops15_Iter_comp_iterINS2_19IntervalStartSorterIi{size_t}EEEEEvT_SF_SF_SF_T0_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC506" class="line" lang="plaintext"> (optional=templinst|arch=!amd64)_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEENS0_5__ops14_Val_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E0_EEEvT_T0_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC507" class="line" lang="plaintext"> (optional=templinst|arch=!amd64)_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEENS0_5__ops14_Val_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E_EEEvT_T0_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC508" class="line" lang="plaintext"> (optional=templinst|arch=!amd64)_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPN6SeqLib11PlottedReadESt6vectorIS3_SaIS3_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC509" class="line" lang="plaintext"> (optional=templinst|arch=armel armhf i386 ia64 m68k mips64el mipsel ppc64el riscv64 sh4)_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPN6SeqLib13GenomicRegionESt6vectorIS3_SaIS3_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC510" class="line" lang="plaintext"> (optional=templinst|arch=armel armhf sh4)_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPN6SeqLib9TIntervalIijEESt6vectorIS4_SaIS4_EEEENS0_5__ops14_Val_comp_iterINS2_19IntervalStartSorterIijEEEEEvT_T0_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC511" class="line" lang="plaintext"> (optional=templinst|arch=arm64 ia64 kfreebsd-amd64 mips64el ppc64el riscv64)_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPN6SeqLib9TIntervalIimEESt6vectorIS4_SaIS4_EEEENS0_5__ops14_Val_comp_iterINS2_19IntervalStartSorterIimEEEEEvT_T0_@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC459" class="line" lang="plaintext"> (optional=templinst|arch=kfreebsd-amd64)_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPN6SeqLib9TIntervalIimEESt6vectorIS4_SaIS4_EEEENS0_5__ops14_Val_comp_iterINS2_19IntervalStartSorterIimEEEEEvT_T0_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC460" class="line" lang="plaintext"> (optional=templinst)_ZSt4swapIN12aho_corasick7ahoemitIcEEENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS7_ESt18is_move_assignableIS7_EEE5valueEvE4typeERS7_SH_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC513" class="line" lang="plaintext"> (optional=templinst<span class="idiff left right">|arch=amd64</span>)_ZSt4swapIN6SeqLib11PlottedReadEENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS6_ESt18is_move_assignableIS6_EEE5valueEvE4typeERS6_SG_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC514" class="line" lang="plaintext"> (optional=templinst|arch=<span class="idiff left right">!amd64)_ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEENS0_5__ops16_Iter_equals_valIKS4_EEET_SE_SE_T0_St26random_access_iterator_tag</span>@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC461" class="line" lang="plaintext"> (optional=templinst)_ZSt4swapIN6SeqLib11PlottedReadEENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS6_ESt18is_move_assignableIS6_EEE5valueEvE4typeERS6_SG_@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC462" class="line" lang="plaintext"> (optional=templinst|arch=<span class="idiff left right">armel armhf)_ZSt9iter_swapIN9__gnu_cxx17__normal_iteratorIPN6SeqLib13GenomicRegionESt6vectorIS3_SaIS3_EEEES8_EvT_T0_</span>@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC463" class="line" lang="plaintext"> (optional=templinst|arch=amd64 arm64 kfreebsd-amd64 x32)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_PKS5_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC464" class="line" lang="plaintext"> (optional=templinst)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_S9_@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC517" class="line" lang="plaintext"> (optional=templinst|arch=<span class="idiff left right">arm64 kfreebsd-amd64 x32</span>)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_OS8_@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="plaintext"> (optional=templinst|arch=<span class="idiff left right">kfreebsd-amd64</span>)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_OS8_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC466" class="line" lang="plaintext"> (optional=templinst)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_RKS8_@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC467" class="line" lang="plaintext"> (arch=armel armhf)_ZTI10idx_delete@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC468" class="line" lang="plaintext"> (arch=armel armhf)_ZTI14bam_hdr_delete@Base 1.1.2</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -535,13 +483,12 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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<pre style="margin: 0;"> <span id="LC483" class="line" lang="plaintext"> (arch=!armel !riscv64)_ZTISt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC484" class="line" lang="plaintext"> (arch=armel riscv64)_ZTISt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC485" class="line" lang="plaintext"> (arch=!armel !riscv64)_ZTISt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC538" class="line" lang="plaintext"> (arch=armel riscv64)_ZTISt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC486" class="line" lang="plaintext"> (arch=armel riscv64)_ZTISt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="plaintext"> (arch=alpha amd64 arm64 armhf i386 ia64 m68k mips64el mipsel powerpc ppc64 ppc64el s390x sh4 sparc64 x32)_ZTISt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC494" class="line" lang="plaintext"> (arch=armel riscv64)_ZTISt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -565,13 +512,12 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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<pre style="margin: 0;"> <span id="LC515" class="line" lang="plaintext"> (arch=armel riscv64)_ZTSSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC518" class="line" lang="plaintext"> (arch=!armel !riscv64)_ZTSSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.2</span>
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<pre style="margin: 0;">-<span id="LC574" class="line" lang="plaintext"> (arch=amd64)_ZTSSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="plaintext"> (arch=alpha amd64 arm64 armhf i386 ia64 m68k mips64el mipsel powerpc ppc64 ppc64el s390x sh4 sparc64 x32)_ZTSSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC521" class="line" lang="plaintext"> (arch=armel riscv64)_ZTSSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -585,13 +531,12 @@ libseqlib.so.1 libseqlib1 #MINVER#</td>
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<pre style="margin: 0;"> <span id="LC531" class="line" lang="plaintext"> (subst|arch=!armel !riscv64)_ZTVSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIi{size_t}EESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.2</span>
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<pre style="margin: 0;"> <span id="LC532" class="line" lang="plaintext"> (arch=armel riscv64)_ZTVSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2</span>
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="plaintext"> (arch=armel riscv64)_ZTVSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2</span>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="plaintext"> (arch=alpha amd64 arm64 armhf i386 ia64 m68k mips64el mipsel powerpc ppc64 ppc64el s390x sh4 sparc64 x32)_ZTVSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.2</span>
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540
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<pre style="margin: 0;"> <span id="LC540" class="line" lang="plaintext"> (arch=armel riscv64)_ZTVSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2</span>
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541
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<pre style="margin: 0;"> <span id="LC541" class="line" lang="plaintext"> (arch=!armel !riscv64)_ZTVSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.2</span>
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597
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542
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<pre style="margin: 0;"> <span id="LC542" class="line" lang="plaintext"> (arch=armel riscv64)_ZTVSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE@Base 1.1.2</span>
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<li id="a6d48c845db44214d4c06ec11a3f09515d155e6e">
<a href="https://salsa.debian.org/med-team/libseqlib/-/compare/2e4489a4e15ab0ac2baa50e1ee9382299408a150...6cb334050d63d90bb8dcece24a62205fe1dacf73#a6d48c845db44214d4c06ec11a3f09515d155e6e"><strong>debian/patches/adapt_to_debian_fermi-lite.patch</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Fri, 27 Jan 2017 13:18:48 +0100</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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3
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="p">Description: In Debian's fermi-lite 0.1-3 a name space pollution with</span></span>
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4
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"> bwa was resolved. This solution was different to the one libseqlib</span>
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5
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"> author was doing in his private copy of fermi-lite</span>
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<li id="88fc8c6a50e2a0c0769f24498b3f64d5cf60081f">
<a href="https://salsa.debian.org/med-team/libseqlib/-/compare/2e4489a4e15ab0ac2baa50e1ee9382299408a150...6cb334050d63d90bb8dcece24a62205fe1dacf73#88fc8c6a50e2a0c0769f24498b3f64d5cf60081f"><strong>debian/patches/dynamic_lib.patch</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Fri, 27 Jan 2017 13:18:48 +0100</span></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Description: Create dynamic library</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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4
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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5
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">--- libseqlib.orig/src/Makefile.am</span>
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6
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ libseqlib/src/Makefile.am</span></span>
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<li id="1d2e918f1df29ca1c89a97caa7ad4613935dbdc2">
<a href="https://salsa.debian.org/med-team/libseqlib/-/compare/2e4489a4e15ab0ac2baa50e1ee9382299408a150...6cb334050d63d90bb8dcece24a62205fe1dacf73#1d2e918f1df29ca1c89a97caa7ad4613935dbdc2"><strong>debian/patches/fix_fermi-lite_usage.patch</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Fri, 27 Jan 2017 13:18:48 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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3
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="p">Description: Upstream tries to include a header file bfc.h which</span></span>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"> can not be found in fermi-lite. Just skip this.</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"> .</span>
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<a href="https://salsa.debian.org/med-team/libseqlib/-/compare/2e4489a4e15ab0ac2baa50e1ee9382299408a150...6cb334050d63d90bb8dcece24a62205fe1dacf73#823d6ed0a9fbf3e9fd189294deb7b2d4411b6446"><strong>debian/patches/fix_htslib_usage.patch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Fri, 27 Jan 2017 13:18:48 +0100</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Description: Use header files from libhts-dev</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">--- a/SeqLib/BamRecord.h</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/SeqLib/BamRecord.h</span></span>
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<li id="a747e101e62b200a112a8777b6ccb650cd6d0666">
<a href="https://salsa.debian.org/med-team/libseqlib/-/compare/2e4489a4e15ab0ac2baa50e1ee9382299408a150...6cb334050d63d90bb8dcece24a62205fe1dacf73#a747e101e62b200a112a8777b6ccb650cd6d0666"><strong>debian/patches/fml_include_path.patch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Fri, 27 Jan 2017 13:18:48 +0100</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Description: Make sure header files will be found in /usr/include/fml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">--- a/seq_test/Makefile.am</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/seq_test/Makefile.am</span></span>
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<li id="e130d9656dd0d27ca046c85ad7aee53a453014fe">
<a href="https://salsa.debian.org/med-team/libseqlib/-/compare/2e4489a4e15ab0ac2baa50e1ee9382299408a150...6cb334050d63d90bb8dcece24a62205fe1dacf73#e130d9656dd0d27ca046c85ad7aee53a453014fe"><strong>debian/patches/use_debian_packaged_jsoncpp.patch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Fri, 27 Jan 2017 13:18:48 +0100</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Description: Do not use code copy of jsoncpp</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">--- libseqlib.orig/src/Makefile.am</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ libseqlib/src/Makefile.am</span></span>
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<li id="ee54dc79014b3def963898e50c98877d46c6b27e">
<a href="https://salsa.debian.org/med-team/libseqlib/-/compare/2e4489a4e15ab0ac2baa50e1ee9382299408a150...6cb334050d63d90bb8dcece24a62205fe1dacf73#ee54dc79014b3def963898e50c98877d46c6b27e"><strong>debian/patches/use_debian_packaged_libs.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,6 +2,7 @@ Author: Andreas Tille <tille@debian.org></td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Fri, 27 Jan 2017 13:18:48 +0100</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Description: Skip subdirs in favour of Debian packaged development</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"> libraries and do not use broken install target</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"></span>
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff">--- a/Makefile.am</span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile.am</span></span>
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<li id="2bade74bb4b81285c9b441bd946a0342be3e9737">
<a href="https://salsa.debian.org/med-team/libseqlib/-/compare/2e4489a4e15ab0ac2baa50e1ee9382299408a150...6cb334050d63d90bb8dcece24a62205fe1dacf73#2bade74bb4b81285c9b441bd946a0342be3e9737"><strong>debian/patches/use_debian_packaged_ssw.patch</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Fri, 27 Jan 2017 13:18:48 +0100</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Description: Do not use code copy of libssw</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">--- libseqlib.orig/seq_test/Makefile.am</span>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ libseqlib/seq_test/Makefile.am</span></span>
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<li id="dd6cf73c99414c5c542bab813e94a558066682ce">
<a href="https://salsa.debian.org/med-team/libseqlib/-/compare/2e4489a4e15ab0ac2baa50e1ee9382299408a150...6cb334050d63d90bb8dcece24a62205fe1dacf73#dd6cf73c99414c5c542bab813e94a558066682ce"><strong>debian/patches/use_private_htslib_headers.patch</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,6 +2,7 @@ Author: Andreas Tille <tille@debian.org></td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Mon, 05 Mar 2018 15:39:42 +0100</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/891745</span></span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="p">Description: Hack around improper use of private files of htslib</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff">--- a/SeqLib/BamWalker.h</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/SeqLib/BamWalker.h</span></span>
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