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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/soapdenovo">Debian Med / soapdenovo</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/soapdenovo/-/commit/1dba3d77e04519109ba4411952da75b20dd656f1">1dba3d77</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T20:15:25+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/soapdenovo/-/commit/3ee9c23e2ec5677ca74c7074baed1b47c232b002">3ee9c23e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T20:15:25+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/soapdenovo/-/commit/a19796d1f2d6dcf13d2b8674d3254dc022016598">a19796d1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T20:15:29+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Secure URI in copyright format
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/soapdenovo/-/commit/e3d1e6db04ab1ec93deb1ee670420cfa9aab85b5">e3d1e6db</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T20:15:29+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/soapdenovo/-/commit/b2378887232e46416cdee216a8b15fafa8dd6da8">b2378887</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T20:15:29+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/soapdenovo/-/commit/186471a1a94e19a2019da29af9ad9758f8babaff">186471a1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T20:15:30+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/soapdenovo/-/commit/fecd7146dc3be166c2f36db6416858c59dd4c6b9">fecd7146</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T20:15:30+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/soapdenovo/-/commit/f22fb749c5f8fe733af0979560eef2e77c23a58a">f22fb749</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T20:20:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright).
Changes-By: lintian-brush
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/soapdenovo/-/commit/4838c025031e30f8f6b858fec65e356d6cdb6ee3">4838c025</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T22:52:57+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use -fcommon option to tolerate "multiple definition of"
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/soapdenovo/-/commit/2016bd7682dabf1d07a7eba43eb9146fac47665a">2016bd76</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T23:01:42+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>8 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#debc0467783e93acf8adc1ad1250405af4135218">
debian/patches/add_debug_symbols.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/soapdenovo/-/compare/bc6683f5613ae7017c17d458dc6a28a414f4981d...2016bd7682dabf1d07a7eba43eb9146fac47665a#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">soapdenovo (1.05-6) unstable; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Standards-Version: 4.5.0 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Secure URI in copyright format (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Remove trailing whitespace in debian/changelog (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Remove trailing whitespace in debian/rules (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * Remove obsolete field Name from debian/upstream/metadata (already present in</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> machine-readable debian/copyright).</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * Use -fcommon option to tolerate "multiple definition of"</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 30 Oct 2020 22:53:04 +0100</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">soapdenovo (1.05-5) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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3
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> * Team upload</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -41,7 +57,7 @@ soapdenovo (1.05-3) unstable; urgency=medium</td>
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41
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext">soapdenovo (1.05-2) unstable; urgency=low</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> * soapdenovo is not maintained anymore, please use</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> soapdenovo2 (Closes: #732281).<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> soapdenovo2 (Closes: #732281).</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> -- Olivier Sallou <osallou@debian.org> Wed, 18 Dec 2013 12:32:59 +0100</span>
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47
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"></span>
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<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/soapdenovo/-/compare/bc6683f5613ae7017c17d458dc6a28a414f4981d...2016bd7682dabf1d07a7eba43eb9146fac47665a#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
deleted
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/soapdenovo/-/compare/bc6683f5613ae7017c17d458dc6a28a414f4981d...2016bd7682dabf1d07a7eba43eb9146fac47665a#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,12 +3,13 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.</td>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Olivier Sallou <osallou@debian.org></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 11~</span>),</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 13</span>),</span>
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> rename</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">1.4</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5.0</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/soapdenovo</span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/soapdenovo.git</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Homepage: http://soap.genomics.org.cn/soapdenovo.html</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Package: soapdenovo</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Architecture: any-amd64 any-ppc64 any-ia64</span>
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<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/soapdenovo/-/compare/bc6683f5613ae7017c17d458dc6a28a414f4981d...2016bd7682dabf1d07a7eba43eb9146fac47665a#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Format: http<span class="idiff left right">s</span>://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: soapdenovo</span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Source: http://soap.genomics.org.cn/soapdenovo.html</span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/soapdenovo/-/compare/bc6683f5613ae7017c17d458dc6a28a414f4981d...2016bd7682dabf1d07a7eba43eb9146fac47665a#debc0467783e93acf8adc1ad1250405af4135218"><strong>debian/patches/add_debug_symbols.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,8 +7,9 @@ Description: Add debug symbols</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/127mer/Makefile</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="p">@@ -1,6 +1,6 @@</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> CC= gcc</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="idiff left right"> </span>CFLAGS= -O3 -fomit-frame-pointer </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;"><span class="idiff left right">-</span>CFLAGS= -O3 -fomit-frame-pointer </span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-DFLAGS= </span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+CFLAGS+= -O3 -fomit-frame-pointer </span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+DFLAGS= -g</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"> OBJS= arc.o attachPEinfo.o bubble.o check.o compactEdge.o \</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"> concatenateEdge.o connect.o contig.o cutTipPreGraph.o cutTip_graph.o \</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,8 +18,9 @@ Description: Add debug symbols</td>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/31mer/Makefile</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="diff"><span class="p">@@ -1,6 +1,6 @@</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="diff"> CC= gcc</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"><span class="idiff left right"> </span>CFLAGS= -O3 -fomit-frame-pointer</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;"><span class="idiff left right">-</span>CFLAGS= -O3 -fomit-frame-pointer</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-DFLAGS= </span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+CFLAGS+= -O3 -fomit-frame-pointer</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+DFLAGS= -g</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="diff"> OBJS= arc.o attachPEinfo.o bubble.o check.o compactEdge.o \</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"> concatenateEdge.o connect.o contig.o cutTipPreGraph.o cutTip_graph.o \</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -27,8 +29,9 @@ Description: Add debug symbols</td>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/63mer/Makefile</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="diff"><span class="p">@@ -1,6 +1,6 @@</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="diff"> CC= gcc</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="diff"><span class="idiff left right"> </span>CFLAGS= -O3 -fomit-frame-pointer </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;"><span class="idiff left right">-</span>CFLAGS= -O3 -fomit-frame-pointer </span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-DFLAGS= </span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+CFLAGS+= -O3 -fomit-frame-pointer </span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+DFLAGS= -g</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="diff"> OBJS= arc.o attachPEinfo.o bubble.o check.o compactEdge.o \</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="diff"> concatenateEdge.o connect.o contig.o cutTipPreGraph.o cutTip_graph.o \</span>
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<a href="https://salsa.debian.org/med-team/soapdenovo/-/compare/bc6683f5613ae7017c17d458dc6a28a414f4981d...2016bd7682dabf1d07a7eba43eb9146fac47665a#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,9 +5,12 @@</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#export DH_VERBOSE=1</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="make"><span class="k" style="font-weight: 600;">export </span><span class="nv" style="color: #008080;">DEB_BUILD_MAINT_OPTIONS</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">hardening</span><span class="o" style="font-weight: 600;">=</span>+all</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># FIXME: This is discouraged ... but works for the moment to solve bug #957194</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># https://wiki.gentoo.org/wiki/Gcc_10_porting_notes/fno_common#The_-fcommon_workaround_.28discouraged.29</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="make"><span class="k" style="font-weight: 600;">export </span><span class="nv" style="color: #008080;">DEB_CFLAGS_MAINT_APPEND</span><span class="o" style="font-weight: 600;">=</span><span class="nt" style="color: #000080;">-fcommon</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="make"><span class="nl">%</span><span class="o" style="font-weight: 600;">:</span></span>
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10
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<td class="diff-line-num new_line old" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="make"> dh <span class="nv" style="color: #008080;">$@</span><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="make"> dh <span class="nv" style="color: #008080;">$@</span></span>
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11
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="make"></span>
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12
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="make"><span class="nl">override_dh_install</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="make"> dh_install</span>
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<li id="b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<a href="https://salsa.debian.org/med-team/soapdenovo/-/compare/bc6683f5613ae7017c17d458dc6a28a414f4981d...2016bd7682dabf1d07a7eba43eb9146fac47665a#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<a href="https://salsa.debian.org/med-team/soapdenovo/-/compare/bc6683f5613ae7017c17d458dc6a28a414f4981d...2016bd7682dabf1d07a7eba43eb9146fac47665a#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Name: SOAPdenovo</span>
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2
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Reference:</span>
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3
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"> Author: ></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Ruiqiang Li and Hongmei Zhu and Jue Ruan and Wubin Qian and Xiaodong</span>
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