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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/fastlink">Debian Med / fastlink</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/-/commit/be42dd58900f53fd1bb920352e4862ecb86574d3">be42dd58</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T09:29:32+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/-/commit/41e87bbae51f3c37d15d3f582797fc77ed485dda">41e87bba</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T09:29:32+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/-/commit/374fdd540d39622b8174a25e720127c935780d10">374fdd54</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T09:30:25+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/-/commit/977d33ba06ccc2e3b35f4d89dcfd58602f3ea912">977d33ba</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T09:30:26+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/-/commit/929ee8221aa3cf82c94aa5750e7bb2a9ab0bfa0b">929ee822</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T09:30:26+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/-/commit/fe235d13909c668543697b33c14124a8479d00f3">fe235d13</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T09:30:26+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/-/commit/80c792b8c7d5ec834abaee17446ee75e1d180325">80c792b8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T09:30:31+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refer to specific version of license GPL-2+.
Changes-By: lintian-brush
Fixes: lintian: copyright-refers-to-symlink-license
See-also: https://lintian.debian.org/tags/copyright-refers-to-symlink-license.html
Fixes: lintian: copyright-refers-to-versionless-license-file
See-also: https://lintian.debian.org/tags/copyright-refers-to-versionless-license-file.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/-/commit/01e17b9006c68e5b1920e0aa1526707002ef1adf">01e17b90</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-10-30T09:45:20+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use -fcommon option to tolerate "multiple definition of"
</pre>
</li>
</ul>
<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/fastlink/-/compare/b761377e3cf941c15cee122a2d50cd7715e2bc65...01e17b9006c68e5b1920e0aa1526707002ef1adf#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,6 +3,16 @@ fastlink (4.1P-fix100+dfsg-3) UNRELEASED; urgency=medium</td>
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3
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Add fake watch file</span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * debian/get-orig-source: Do not create new tarball if there is no new</span>
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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> patchlevel</span>
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<td class="diff-line-num new old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Standards-Version: 4.5.0 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine-</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> update)</span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Remove trailing whitespace in debian/changelog (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * Refer to specific version of license GPL-2+.</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> * Use -fcommon option to tolerate "multiple definition of"</span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> Closes: #957194</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 30 Oct 2020 09:13:00 +0100</span>
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -191,7 +201,7 @@ fastlink (4.1P-fix81-1) unstable; urgency=low</td>
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"></span>
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202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext">fastlink (4.1P-2) unstable; urgency=low</span>
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193
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203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"></span>
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194
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="plaintext"> * Adopted by new maintainer; closes: #92804<span class="idiff left right"> </span></span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"> * Adopted by new maintainer; closes: #92804</span>
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195
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205
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> * Removed several unnecessary files in debian subdirectory.</span>
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196
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> * Updated to latest standards version and added Build-Depends (changed</span>
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197
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207
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> control, copyright, dirs, docs, and rules);</span>
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<a href="https://salsa.debian.org/med-team/fastlink/-/compare/b761377e3cf941c15cee122a2d50cd7715e2bc65...01e17b9006c68e5b1920e0aa1526707002ef1adf#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
deleted
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/-/compare/b761377e3cf941c15cee122a2d50cd7715e2bc65...01e17b9006c68e5b1920e0aa1526707002ef1adf#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,11 +4,12 @@ Uploaders: Andreas Tille <tille@debian.org>,</td>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Charles Plessy <plessy@debian.org></span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 11~</span>)</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">1.4</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 13</span>)</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5.0</span></span>
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/fastlink</span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/fastlink.git</span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Homepage: https://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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12
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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13
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Package: fastlink</span>
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14
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Architecture: any</span>
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<a href="https://salsa.debian.org/med-team/fastlink/-/compare/b761377e3cf941c15cee122a2d50cd7715e2bc65...01e17b9006c68e5b1920e0aa1526707002ef1adf#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,4 +39,4 @@ License: GPL-2+</td>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> On Debian systems, the complete text of the GNU General Public</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> License can be found in `/usr/share/common-licenses/GPL'.</span></pre>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> License can be found in `/usr/share/common-licenses/GPL<span class="idiff left right">-2</span>'.</span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/-/compare/b761377e3cf941c15cee122a2d50cd7715e2bc65...01e17b9006c68e5b1920e0aa1526707002ef1adf#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">#!/usr/bin/make -f</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"># FIXME: This is discouraged ... but works for the moment to solve bug #957194</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"># https://wiki.gentoo.org/wiki/Gcc_10_porting_notes/fno_common#The_-fcommon_workaround_.28discouraged.29</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">export DEB_CFLAGS_MAINT_APPEND=-fcommon</span>
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4
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dh $@ --sourcedirectory=4.1P/src</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,7 +15,9 @@ override_dh_auto_build:</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> dh_auto_build -- CFLAGS="$(CFLAGS)" DEBIANLDFLAGS="$(LDFLAGS)"</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> echo "There is no test suite provided but automatism is grabbing check.c for the check which fails."</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">endif</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">get-orig-source:</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> sh debian/get-orig-source</span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/-/compare/b761377e3cf941c15cee122a2d50cd7715e2bc65...01e17b9006c68e5b1920e0aa1526707002ef1adf#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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