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<h3>
Étienne Mollier pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/paleomix">Debian Med / paleomix</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/paleomix/-/commit/8c4563a807ff7e0e12d20d9c616ae751284d71bf">8c4563a8</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-11-02T17:22:25+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.3.2</pre>
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</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
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<li class="file-stats">
<a href="#3f4c1daa84110ac0a1cf43167520d6d8737bc806">
docs/Makefile
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<li class="file-stats">
<a href="#0fdbda66ca3b7b0b45b2a4108379ad19f7923a9e">
docs/bam_pipeline/configuration.rst
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<li class="file-stats">
<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
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<li class="file-stats">
<a href="#5f751d21bc12129082e8f5d7b3edbc140a238ce7">
docs/installation.rst
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<li class="file-stats">
<a href="#e321de7670047f8a17ca0621f4e85c596f2a665d">
docs/phylo_pipeline/usage.rst
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<li class="file-stats">
<a href="#42df14675b1c376e5c2ba0aa5ccfdd84894de189">
docs/release.rst
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<li class="file-stats">
<a href="#5bb191d04629cdee31c9772e55168d47d9ce56d7">
misc/skeleton.py
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<li class="file-stats">
<a href="#ad7c5e26ed27c61530bdd1096c6b004bced813fa">
misc/synthesize_reads.py
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<li class="file-stats">
<a href="#31db6545668043f26d9d05b8338b53acf3b3c5e1">
paleomix/__init__.py
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<li class="file-stats">
<a href="#df89aec0712464da4da1613415f0ec1b019ec6a3">
paleomix/atomiccmd/__init__.py
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<li class="file-stats">
<a href="#37a3113a19f87e3f2e4a83827cd4f68a9d1bf5cd">
paleomix/atomiccmd/builder.py
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<li class="file-stats">
<a href="#346d3dc8ea9623e13fafc5998c1230f9e55e736f">
paleomix/atomiccmd/command.py
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<li class="file-stats">
<a href="#d8017f4b9be68f963ff9b8fc63c80795c351fc2f">
paleomix/atomiccmd/pprint.py
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<li class="file-stats">
<a href="#9caf62a5b3ead0d3e988552c62f85604573a1b20">
paleomix/atomiccmd/sets.py
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<li class="file-stats">
<a href="#011e0b90b44378da7641a4758ff0693fa8d0c9a3">
paleomix/common/__init__.py
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<li class="file-stats">
<a href="#30ee38d868308bb9535af9c7efd1e32dd91fcd81">
paleomix/common/argparse.py
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<li class="file-stats">
<a href="#a2d5f8d43fd013fb02fe1d9fd90f2be5335ae684">
paleomix/common/bamfiles.py
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<li class="file-stats">
<a href="#e55805e7d33eaef5c399d5e88065e6240ea7e248">
paleomix/common/bedtools.py
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<li class="file-stats">
<a href="#6bda70d4c36cb39c541b21c3c968f22fd86d36e9">
paleomix/common/fileutils.py
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<li class="file-stats">
<a href="#6d81ee71986a206ab6d47e7101c402a58415d750">
paleomix/common/formats/__init__.py
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<li class="file-stats">
<a href="#4f4e67a11ae65343d91b3466f5d11c55e75fb994">
paleomix/common/formats/_common.py
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<li class="file-stats">
<a href="#5bd63af167606456a757e165f37b82e9eb2a7539">
paleomix/common/formats/_graph.py
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<li class="file-stats">
<a href="#67dcabe47ffda73bf54f3485ee9dde6f1fb32055">
paleomix/common/formats/fasta.py
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<li class="file-stats">
<a href="#368603040e9a85cbc772cb98371e28d8e02927a2">
paleomix/common/formats/fastq.py
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</li>
<li class="file-stats">
<a href="#245d148285eb5dffc18f12ca83d3007f0c41d608">
paleomix/common/formats/msa.py
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<li class="file-stats">
<a href="#13ea2419230dfde9fc24a87c048d8bdbee3fbbf1">
paleomix/common/formats/newick.py
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<li class="file-stats">
<a href="#8c0fdb77f3f1183a834f68b32e5341a3b19f046f">
paleomix/common/formats/phylip.py
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</li>
<li class="file-stats">
<a href="#f9c869c5638d027c240eb38018538afe24283b01">
paleomix/common/logging.py
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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