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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/paleomix">Debian Med / paleomix</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/paleomix/-/commit/cf42e3e027dc4a76c5913c2291b613e834e981e5">cf42e3e0</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-11-02T17:22:24+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/paleomix/-/commit/8c4563a807ff7e0e12d20d9c616ae751284d71bf">8c4563a8</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-11-02T17:22:25+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.3.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/paleomix/-/commit/9e78180d76cb03f413ea5154504b315c86132ecf">9e78180d</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-11-02T17:22:28+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.3.2'
Update to upstream version '1.3.2'
with Debian dir c652a722f76e41fd7bc86c592ea24eeb39aa5257</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/paleomix/-/commit/661334c8d2f3ae271cf1791bb2ec1d9ae29f5de9">661334c8</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-11-02T17:34:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove python3_in_shebang.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/paleomix/-/commit/7b66c327ed7c64dd4dd6dc33ebad9f8089a4df04">7b66c327</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-11-02T17:51:38+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refresh xfail_command_tests.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/paleomix/-/commit/2bf8aecd4992313a13cb0bc585107db1cca87ee7">2bf8aecd</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-11-02T18:27:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">mark xfail_command_tests.patch no forward needed
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/paleomix/-/commit/476de113db1be2ece56973983c1ea5d88d732147">476de113</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-11-02T18:33:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">compressed-duplicate now unused-override
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/paleomix/-/commit/e5e7aba8bc647ac6d5029ccde8a2cabf23c3d790">e5e7aba8</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-11-02T18:44:46+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#efc7fe57b5983b0283c6410fceef7e74f687aeb5">
debian/lintian-overrides
</a>
</li>
<li class="file-stats">
<a href="#4b1e905b8dc8db5f80b1dbfa9df0c8efe9a7a646">
<span class="deleted-file">
−
debian/patches/python3_in_shebang.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#627569a09e43d83cd42f80839ad6ba799c78a4a8">
debian/patches/xfail_command_tests.patch
</a>
</li>
<li class="file-stats">
<a href="#3f4c1daa84110ac0a1cf43167520d6d8737bc806">
docs/Makefile
</a>
</li>
<li class="file-stats">
<a href="#0fdbda66ca3b7b0b45b2a4108379ad19f7923a9e">
docs/bam_pipeline/configuration.rst
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</li>
<li class="file-stats">
<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
</a>
</li>
<li class="file-stats">
<a href="#5f751d21bc12129082e8f5d7b3edbc140a238ce7">
docs/installation.rst
</a>
</li>
<li class="file-stats">
<a href="#e321de7670047f8a17ca0621f4e85c596f2a665d">
docs/phylo_pipeline/usage.rst
</a>
</li>
<li class="file-stats">
<a href="#42df14675b1c376e5c2ba0aa5ccfdd84894de189">
docs/release.rst
</a>
</li>
<li class="file-stats">
<a href="#5bb191d04629cdee31c9772e55168d47d9ce56d7">
misc/skeleton.py
</a>
</li>
<li class="file-stats">
<a href="#ad7c5e26ed27c61530bdd1096c6b004bced813fa">
misc/synthesize_reads.py
</a>
</li>
<li class="file-stats">
<a href="#31db6545668043f26d9d05b8338b53acf3b3c5e1">
paleomix/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#df89aec0712464da4da1613415f0ec1b019ec6a3">
paleomix/atomiccmd/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#37a3113a19f87e3f2e4a83827cd4f68a9d1bf5cd">
paleomix/atomiccmd/builder.py
</a>
</li>
<li class="file-stats">
<a href="#346d3dc8ea9623e13fafc5998c1230f9e55e736f">
paleomix/atomiccmd/command.py
</a>
</li>
<li class="file-stats">
<a href="#d8017f4b9be68f963ff9b8fc63c80795c351fc2f">
paleomix/atomiccmd/pprint.py
</a>
</li>
<li class="file-stats">
<a href="#9caf62a5b3ead0d3e988552c62f85604573a1b20">
paleomix/atomiccmd/sets.py
</a>
</li>
<li class="file-stats">
<a href="#011e0b90b44378da7641a4758ff0693fa8d0c9a3">
paleomix/common/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#30ee38d868308bb9535af9c7efd1e32dd91fcd81">
paleomix/common/argparse.py
</a>
</li>
<li class="file-stats">
<a href="#a2d5f8d43fd013fb02fe1d9fd90f2be5335ae684">
paleomix/common/bamfiles.py
</a>
</li>
<li class="file-stats">
<a href="#e55805e7d33eaef5c399d5e88065e6240ea7e248">
paleomix/common/bedtools.py
</a>
</li>
<li class="file-stats">
<a href="#6bda70d4c36cb39c541b21c3c968f22fd86d36e9">
paleomix/common/fileutils.py
</a>
</li>
<li class="file-stats">
<a href="#6d81ee71986a206ab6d47e7101c402a58415d750">
paleomix/common/formats/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#4f4e67a11ae65343d91b3466f5d11c55e75fb994">
paleomix/common/formats/_common.py
</a>
</li>
<li class="file-stats">
<a href="#5bd63af167606456a757e165f37b82e9eb2a7539">
paleomix/common/formats/_graph.py
</a>
</li>
<li class="file-stats">
<a href="#67dcabe47ffda73bf54f3485ee9dde6f1fb32055">
paleomix/common/formats/fasta.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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