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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/mosdepth">Debian Med / mosdepth</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/mosdepth/-/commit/659afae8e3334acb68bcb73fc4831ed16dac51d7">659afae8</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-11-03T22:49:40+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Extended clean
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mosdepth/-/commit/fcfafa5f2b8a8fe03932ec096a9d76ba76efa9bb">fcfafa5f</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-11-03T22:53:18+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Avoid redundant tests/missing.bed
Changes not staged for commit:
(use "git add/rm <file>..." to update what will be committed)
(use "git restore <file>..." to discard changes in working directory)
deleted: tests/missing.bed
This somehow gets removed during build.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mosdepth/-/commit/ab04e61aa21d591d5255ef9a381a590e80f42b7c">ab04e61a</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-11-04T14:35:17+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Respecting request not to test
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/mosdepth/-/compare/99e8a677590be26e0cf35c6edae5205baee9c0c1...ab04e61aa21d591d5255ef9a381a590e80f42b7c#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: mosdepth</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Source: https://github.com/brentp/mosdepth</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">Files-Excluded: tests/*.bam*</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Files-Excluded:</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> tests/*.bam*</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> tests/missing.bed </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Files: *</span>
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Copyright: 2017-2020 Brent Pedersen</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/mosdepth/-/compare/99e8a677590be26e0cf35c6edae5205baee9c0c1...ab04e61aa21d591d5255ef9a381a590e80f42b7c#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,6 +15,7 @@ override_dh_auto_build:</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> help2man --no-info --no-discard-stderr --help-option="-h" ./mosdepth > debian/mosdepth.1</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> rm -f tests/missing.bed</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> for f in debian/missing-sources/*; do \</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> outp=tests/`echo $$f | sed -e 's/sam/bam/' -e 's/debian\/missing\-sources\///'` ; \</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,7 +27,11 @@ override_dh_auto_test:</td>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> samtools index $$outp ; \</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> done</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> dh_auto_test</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">endif</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> rm -f debian/mosdepth.1</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> rm -f mosdepth</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> rm -rf tests/nimcache</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> rm -f tests/big.bam.csi</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> rm -f tests/ovl.bam tests/ovl.bam.bai tests/overlapping-pairs.bam.bai tests/overlapping-pairs.bam tests/overlapping-pairs.bam tests/empty-tids.bam.bai tests/empty-tids.bam tests/big.bam tests/nanopore.bam tests/nanopore.bam.bai</span></pre>
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