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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/trnascan-se">Debian Med / trnascan-se</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/trnascan-se/-/commit/7f26651a68603a10a9ceb9499c49f401c932d802">7f26651a</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-11-04T21:49:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/control: add autoconf-archive as dependency
This will is needed to address CFLAGS overrides preventing the
propagation of standard Debian compiler flags.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trnascan-se/-/commit/27bd15151f0a95fe67b3e83efbf7f656c34ad149">27bd1515</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-11-04T21:50:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add configure_debugging.patch
This allows the merge of Debian standard build options with the
ones from upstream when needed.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trnascan-se/-/commit/0185fcdd05fea1d6867d40d7d5e7685541c093ee">0185fcdd</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-11-04T22:01:55+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#4227a777ba9279d1f0ec48b9d34c9ac14d2bc3a0">
<span class="new-file">
+
debian/patches/configure_debugging.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/trnascan-se/-/compare/d847dff756dfbdb27c7d3ca20922c7b53f923b2d...0185fcdd05fea1d6867d40d7d5e7685541c093ee#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">trnascan-se (2.0.7+ds-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">trnascan-se (2.0.7+ds-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * New upstream version.</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Fixed typo in tRNAscan-SE.1.</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> -- Étienne Mollier <etienne.mollier@mailoo.org> Wed, 04 Nov 2020 2<span class="idiff left right">0:19:11</span> +0100</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Étienne Mollier <etienne.mollier@mailoo.org> Wed, 04 Nov 2020 2<span class="idiff left right">2:01:02</span> +0100</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">trnascan-se (2.0.6+ds-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/trnascan-se/-/compare/d847dff756dfbdb27c7d3ca20922c7b53f923b2d...0185fcdd05fea1d6867d40d7d5e7685541c093ee#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,6 +5,7 @@ Section: non-free/science</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">XS-Autobuild: yes</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> autoconf-archive,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> infernal</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Standards-Version: 4.5.0</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/trnascan-se</span>
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<li id="4227a777ba9279d1f0ec48b9d34c9ac14d2bc3a0">
<a href="https://salsa.debian.org/med-team/trnascan-se/-/compare/d847dff756dfbdb27c7d3ca20922c7b53f923b2d...0185fcdd05fea1d6867d40d7d5e7685541c093ee#4227a777ba9279d1f0ec48b9d34c9ac14d2bc3a0"><strong>debian/patches/configure_debugging.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: append CFLAGS in configure.ac instead of overriding it</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> This is needed to propagate Debian standard build flags</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Author: Étienne Mollier <etienne.mollier@mailoo.org></span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Forwarded: no</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Last-Update: 2020-11-04</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- trnascan-se.orig/configure.ac</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ trnascan-se/configure.ac</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="p">@@ -21,9 +21,10 @@</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> AC_PROG_CC</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> if test "$enable_debugging" != "no"; then</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- CFLAGS="-g -Wall"</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ AX_APPEND_FLAG([-g], [CFLAGS])</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ AX_APPEND_FLAG([-Wall], [CFLAGS])</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> else</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- CFLAGS="-O3"</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ AX_APPEND_FLAG([-O3], [CFLAGS])</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> fi</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> # standard install program</span></pre>
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<a href="https://salsa.debian.org/med-team/trnascan-se/-/compare/d847dff756dfbdb27c7d3ca20922c7b53f923b2d...0185fcdd05fea1d6867d40d7d5e7685541c093ee#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">pkg-data.patch</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">confdir.patch</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">chmod_only_if_exists.patch</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">configure_debugging.patch</span></pre>
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