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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/nim-hts">Debian Med / nim-hts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
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<strong><a href="https://salsa.debian.org/med-team/nim-hts/-/commit/f9c733ac235af00026ce89691be571ebde0dd6b7">f9c733ac</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-11-05T11:23:04+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix install location for example
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/nim-hts/-/commit/992c2c59a23c21550de6afe31d20db9d32e1272f">992c2c59</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2020-11-05T11:24:26+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Regenerate files during build so there are no install problems if tests are not run
</pre>
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<strong><a href="https://salsa.debian.org/med-team/nim-hts/-/commit/e40e33e4b818cc3b84cd0d9db81fe711f5904afa">e40e33e4</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-11-05T11:26:07+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#b0b27faaec19805ecb23943d9fc1baedadcc1d67">
debian/nim-hts-examples.install
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/nim-hts/-/compare/2be53f8b0b0c83c275815693018756ac440d6c67...e40e33e4b818cc3b84cd0d9db81fe711f5904afa#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">nim-hts (0.3.12+ds-4) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Remove wrong path while running tests</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Fix install location for example</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Regenerate files during build</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Nilesh Patra <npatra974@gmail.com> Thu, 05 Nov 2020 11:25:28 +0530</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">nim-hts (0.3.12+ds-3) unstable; urgency=medium</span>
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2
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * Add test dependency on build-essential</span>
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<li id="b0b27faaec19805ecb23943d9fc1baedadcc1d67">
<a href="https://salsa.debian.org/med-team/nim-hts/-/compare/2be53f8b0b0c83c275815693018756ac440d6c67...e40e33e4b818cc3b84cd0d9db81fe711f5904afa#b0b27faaec19805ecb23943d9fc1baedadcc1d67"><strong>debian/nim-hts-examples.install</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">nim</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">hts</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">nim</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="php"><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">sam</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">hts</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">nim</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="php"><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">test_files</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">hts</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">nim</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
</pre>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="php"><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">vcf</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">hts</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">nim</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
</pre>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="php"><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">bcf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">hts</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">nim</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="php"><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">bam</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">hts</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">nim</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="php"><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">fa</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">hts</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">nim</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="php"><span class="n" style="color: #333;">debian</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">missing</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">sources</span><span class="o" style="font-weight: 600;">/*</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">hts</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">nim</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="php"><span class="n" style="color: #333;">debian</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">run</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">unit</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">test</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">hts</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">nim</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="php"><span class="n" style="color: #333;">debian</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">nim</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">hts</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">nim</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">nim</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">nim</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">hts</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">sam</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">nim</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">hts</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">test_files</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">nim</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">hts</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="php"><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">vcf</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">nim</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">hts</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="php"><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">bcf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">nim</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">hts</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="php"><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">bam</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">nim</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">hts</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="php"><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">fa</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">nim</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">hts</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="php"><span class="n" style="color: #333;">debian</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">missing</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">sources</span><span class="o" style="font-weight: 600;">/*</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">nim</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">hts</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="php"><span class="n" style="color: #333;">debian</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">run</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">unit</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">test</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">nim</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">hts</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="php"><span class="n" style="color: #333;">debian</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/*.</span><span class="n" style="color: #333;">nim</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">nim</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">hts</span></span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">examples</span></span></pre>
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<a href="https://salsa.debian.org/med-team/nim-hts/-/compare/2be53f8b0b0c83c275815693018756ac440d6c67...e40e33e4b818cc3b84cd0d9db81fe711f5904afa#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,8 +5,8 @@ DEB_BUILD_OPTIONS += nodoc</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> dh $@</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">override_dh_auto_<span class="idiff left right">test</span>:</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"><span class="idiff left right">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">override_dh_auto_<span class="idiff left right">build</span>:</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"><span class="idiff left right"> dh_auto_build</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> # Regenerate repacked files</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> cat tests/sa.sam | samtools view -Sb - > tests/sa.bam</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> samtools index tests/sa.bam tests/sa.bam.bai</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,6 +14,9 @@ ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</td>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> samtools index tests/HG02002.bam tests/HG02002.bam.bai</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> tabix tests/test.vcf.gz</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> bcftools index tests/test.bcf</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> nim c --nimcache:$(CURDIR)/tests/nimcache tests/all.nim</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> tests/all</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">endif</span>
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<li id="8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<a href="https://salsa.debian.org/med-team/nim-hts/-/compare/2be53f8b0b0c83c275815693018756ac440d6c67...e40e33e4b818cc3b84cd0d9db81fe711f5904afa#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,7 +8,7 @@ if [ "$AUTOPKGTEST_TMP" = "" ] ; then</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="shell"></span>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> /usr/share/doc/<span class="idiff left right">hts-nim</span>-examples/<span class="k" style="font-weight: 600;">*</span> <span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span></span>
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<td class="diff-line-num new old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> /usr/share/doc/<span class="idiff left right">nim-hts</span>-examples/<span class="k" style="font-weight: 600;">*</span> <span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span></span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="shell"></span>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span></span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">gunzip</span> <span class="nt" style="color: #000080;">-r</span> <span class="k" style="font-weight: 600;">*</span></span>
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