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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/kalign">Debian Med / kalign</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/kalign/-/commit/abbae427b6fe0673cd4be6c35d7703725e3d7dbd">abbae427</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-06T09:32:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.3</pre>
</li>
</ul>
<h4>27 changed files:</h4>
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<li class="file-stats">
<a href="#bffe144f62bf1039a7711f6070e09a172eb81eac">
.github/workflows/ccpp.yml
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<li class="file-stats">
<a href="#c3aa8b7f1c613e43d3bb9d5ac52ac6603d945e89">
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.github/workflows/codeql-analysis.yml
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<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
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<li class="file-stats">
<a href="#49b4b79fe76763911a8042b40397d7a6b73e0a77">
dev/Makefile.am
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<li class="file-stats">
<a href="#3ab42feaaf05804b29cfc7ad2f354809a201ffe4">
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dev/data/BB11001_EOF.msf
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<li class="file-stats">
<a href="#0fc347452a6c22a771a8c90fe25bc0410af0dcbd">
dev/run_aln_test.sh
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<li class="file-stats">
<a href="#ab0941e3fc6a829a4eb4706cc6d4fdc756eeb009">
dev/run_io_test.sh
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<li class="file-stats">
<a href="#825193f269b0b2bae4ab813c47aeeca67b8322b2">
m4/ax_set_compile_flags.m4
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<a href="#c9d71ea10de32de1c3a782e2cb3156ce0bbe784e">
scripts/benchmark.org
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<a href="#67e794015a01b8816bd16290e5f8538236da8245">
src/Makefile.am
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<li class="file-stats">
<a href="#36ab464e3125a0b827633ae92f8869072f3affd4">
src/alignment.c
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<li class="file-stats">
<a href="#82d29b0dd902d85c9fb73cdb1ad71d7f9202ac8e">
src/alignment_parameters.c
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<li class="file-stats">
<a href="#961120526b478238a46befc41e1d21c2d1e223b5">
src/alignment_parameters.h
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<li class="file-stats">
<a href="#97c6bfaa6e042eeb76ccd8d451f9e07fb8396805">
<span class="new-file">
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src/aln_controller.c
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<li class="file-stats">
<a href="#8433e8e1b0747334353b1a7c9d539b7748e6f292">
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src/aln_controller.h
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<li class="file-stats">
<a href="#5b687140da92d6b2f7d263526056ca10fdecba8f">
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src/aln_mem.c
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<a href="#725d53a9d305f55b4b1b4dd405c9ff13c588161d">
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src/aln_mem.h
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<li class="file-stats">
<a href="#8e5e8e5e71950dc9778fd053fce4650f5c90379e">
<span class="new-file">
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src/aln_profileprofile.c
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<li class="file-stats">
<a href="#b5df8bddb4c4d298b174d6bcef809ffb41763dee">
<span class="new-file">
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src/aln_profileprofile.h
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<li class="file-stats">
<a href="#70343f735a1dedf8224cdebdae76f63463327e15">
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src/aln_run.c
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<li class="file-stats">
<a href="#e0fb6d644d74d4f023b2c8017f389f0f6853d027">
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src/aln_run.h
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<li class="file-stats">
<a href="#aba8a7710963473ecddb89785848fcd68d88add4">
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src/aln_seqprofile.c
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<li class="file-stats">
<a href="#8ff5e6c7f89102c2288501a62c17de9648afd5a2">
<span class="new-file">
+
src/aln_seqprofile.h
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<li class="file-stats">
<a href="#496f4c3e1519b33d12eb3a97e712db10bd6af765">
<span class="new-file">
+
src/aln_seqseq.c
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<li class="file-stats">
<a href="#bc4382dbefa61c1fc28f77572c9b24d28cef1f48">
<span class="new-file">
+
src/aln_seqseq.h
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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