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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/kalign">Debian Med / kalign</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/kalign/-/commit/5ffa6aaf82fa50076a3be3153fa363f82d0e96c8">5ffa6aaf</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-06T09:32:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/watch: fix syntax
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kalign/-/commit/c89a2e5af6b830f2b5d66f7291b51973acb14580">c89a2e5a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-06T09:32:20+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kalign/-/commit/abbae427b6fe0673cd4be6c35d7703725e3d7dbd">abbae427</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-06T09:32:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.3</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kalign/-/commit/29957e29e65268ae7042b7740818b94913a3de95">29957e29</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-06T09:32:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.3'
Update to upstream version '3.3'
with Debian dir e53db3a9b69c083ee80f6ffad3fc94011e8dd591</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kalign/-/commit/b3d2e74a491951e84807049ba57c84673118e65f">b3d2e74a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-06T10:34:35+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refresh patches; drop "hardening", it was applied upstream.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kalign/-/commit/d90f3adc23e917156fc2324040f0a144c113a755">d90f3adc</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-06T10:34:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix missing epoch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kalign/-/commit/ac8cb19f1505877dbdf646a66ce89f8d653d58c8">ac8cb19f</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-06T10:34:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">simplify SIMD loops
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kalign/-/commit/8cecf0767ba790e6327319607cbf17142f299824">8cecf076</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-06T10:34:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Added a patch to retain debugging symbols
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kalign/-/commit/7f09e4a8a36312fad5c8e9fc9dba49f7ce6d87b1">7f09e4a8</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-06T10:40:38+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#bffe144f62bf1039a7711f6070e09a172eb81eac">
.github/workflows/ccpp.yml
</a>
</li>
<li class="file-stats">
<a href="#c3aa8b7f1c613e43d3bb9d5ac52ac6603d945e89">
<span class="new-file">
+
.github/workflows/codeql-analysis.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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</li>
<li class="file-stats">
<a href="#6b1217460bb1865ee3d1943432e4c5806346e75c">
<span class="deleted-file">
−
debian/patches/fix-gcc10-build.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#d6c09299b1f914372840e8fd6fcc850f8a11b236">
<span class="deleted-file">
−
debian/patches/hardening
</span>
</a>
</li>
<li class="file-stats">
<a href="#495e524ea8ca57d0a259108d27bd7932b173d5e7">
<span class="new-file">
+
debian/patches/keep-debugging
</span>
</a>
</li>
<li class="file-stats">
<a href="#9005f0e55a67ca063e7cafdce75000f6d207c3c9">
debian/patches/no-native-build
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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</li>
<li class="file-stats">
<a href="#4c0e18367b4a4c2fb5a4fb13dd30c8d2df5876b2">
debian/patches/simde
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#49b4b79fe76763911a8042b40397d7a6b73e0a77">
dev/Makefile.am
</a>
</li>
<li class="file-stats">
<a href="#3ab42feaaf05804b29cfc7ad2f354809a201ffe4">
<span class="new-file">
+
dev/data/BB11001_EOF.msf
</span>
</a>
</li>
<li class="file-stats">
<a href="#8531540d9d6e3b68f31f9c602a4a00748f06423b">
<span class="new-file">
+
dev/data/README~
</span>
</a>
</li>
<li class="file-stats">
<a href="#0fc347452a6c22a771a8c90fe25bc0410af0dcbd">
dev/run_aln_test.sh
</a>
</li>
<li class="file-stats">
<a href="#ab0941e3fc6a829a4eb4706cc6d4fdc756eeb009">
dev/run_io_test.sh
</a>
</li>
<li class="file-stats">
<a href="#825193f269b0b2bae4ab813c47aeeca67b8322b2">
m4/ax_set_compile_flags.m4
</a>
</li>
<li class="file-stats">
<a href="#c9d71ea10de32de1c3a782e2cb3156ce0bbe784e">
scripts/benchmark.org
</a>
</li>
<li class="file-stats">
<a href="#67e794015a01b8816bd16290e5f8538236da8245">
src/Makefile.am
</a>
</li>
<li class="file-stats">
<a href="#36ab464e3125a0b827633ae92f8869072f3affd4">
src/alignment.c
</a>
</li>
<li class="file-stats">
<a href="#82d29b0dd902d85c9fb73cdb1ad71d7f9202ac8e">
src/alignment_parameters.c
</a>
</li>
<li class="file-stats">
<a href="#961120526b478238a46befc41e1d21c2d1e223b5">
src/alignment_parameters.h
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</li>
<li class="file-stats">
<a href="#97c6bfaa6e042eeb76ccd8d451f9e07fb8396805">
<span class="new-file">
+
src/aln_controller.c
</span>
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</li>
<li class="file-stats">
<a href="#8433e8e1b0747334353b1a7c9d539b7748e6f292">
<span class="new-file">
+
src/aln_controller.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#5b687140da92d6b2f7d263526056ca10fdecba8f">
<span class="new-file">
+
src/aln_mem.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#725d53a9d305f55b4b1b4dd405c9ff13c588161d">
<span class="new-file">
+
src/aln_mem.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#8e5e8e5e71950dc9778fd053fce4650f5c90379e">
<span class="new-file">
+
src/aln_profileprofile.c
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #666;">
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<a href="https://salsa.debian.org/med-team/kalign/-/compare/7fd698a594e1efaf84ac2fcde7c9f68a0b226418...7f09e4a8a36312fad5c8e9fc9dba49f7ce6d87b1">View it on GitLab</a>.
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