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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/centrifuge">Debian Med / centrifuge</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/centrifuge/-/commit/f2b5419ed13b5c66abe9e9a4a81055b5e1c8b14b">f2b5419e</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-11-07T20:16:56+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix code to build on arm64
</pre>
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<strong><a href="https://salsa.debian.org/med-team/centrifuge/-/commit/43c60e3eb750080b8d260ffdd08d676a25fe171f">43c60e3e</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-11-07T20:18:58+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#fc38bde0aa5197019c62e0b5cd26b4df177d353c">
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+
debian/patches/fix_arm_build.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/centrifuge/-/compare/a80bc8c7792c0a0536f22a197f257c34ded5775c...43c60e3eb750080b8d260ffdd08d676a25fe171f#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">centrifuge (1.0.3-7) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Fix code to build on arm64</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sat, 07 Nov 2020 20:13:11 +0100</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">centrifuge (1.0.3-6) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * Fix patch for other architectures than amd64</span>
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<li id="fc38bde0aa5197019c62e0b5cd26b4df177d353c">
<a href="https://salsa.debian.org/med-team/centrifuge/-/compare/a80bc8c7792c0a0536f22a197f257c34ded5775c...43c60e3eb750080b8d260ffdd08d676a25fe171f#fc38bde0aa5197019c62e0b5cd26b4df177d353c"><strong>debian/patches/fix_arm_build.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Char needs to be declared signed if negative values are assigned</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: Fri, 06 Nov 2020 16:51:21 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/alphabet.cpp</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/alphabet.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -400,7 +400,7 @@</span> int dnacomp[5] = {</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> const char *iupacs = "!ACMGRSVTWYHKDBN!acmgrsvtwyhkdbn";</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-char mask2iupac[16] = {</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+signed char mask2iupac[16] = {</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> -1,</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> 'A', // 0001</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> 'C', // 0010</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/alphabet.h</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/alphabet.h</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="p">@@ -65,7 +65,7 @@</span> extern uint8_t dinuc2color[5][5];</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> /// corresponding 2-bit nucleotide</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> extern uint8_t nuccol2nuc[5][5];</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> /// Convert a 4-bit mask into an IUPAC code</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-extern char mask2iupac[16];</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+extern signed char mask2iupac[16];</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> </span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> /// Convert an ascii color to an ascii dna char</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> extern char col2dna[];</span></pre>
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<a href="https://salsa.debian.org/med-team/centrifuge/-/compare/a80bc8c7792c0a0536f22a197f257c34ded5775c...43c60e3eb750080b8d260ffdd08d676a25fe171f#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,3 +5,4 @@ hardening.patch</td>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">no_msse2.patch</span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">2to3.patch</span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">enable_arm64_and_others.patch</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">fix_arm_build.patch</span></pre>
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