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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/sambamba">Debian Med / sambamba</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sambamba/-/commit/433be1b60ca397d25523d00308c8728e18660d53">433be1b6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-11T08:24:37+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">DEP3
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sambamba/-/commit/e0251ebd8da8c3d3e4a9d7c35035779eb089d586">e0251ebd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-11T09:27:08+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Lintian-override for static linking
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sambamba/-/commit/725422effe17847483e4e4ff38eff4a76f5c9c9f">725422ef</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-11T09:28:23+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Team upload to unstable
</pre>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#efc7fe57b5983b0283c6410fceef7e74f687aeb5">
<span class="new-file">
+
debian/lintian-overrides
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</li>
<li class="file-stats">
<a href="#b2c11cae808d189b07b3396afcf8f9c078d53b43">
debian/patches/MakefilePointerToStaticLib.patch
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</li>
<li class="file-stats">
<a href="#f5dabfb9f6cd3500eb37cd14d78769dca57b83bf">
debian/patches/sam_hdr_parse_2sam_hdr_parse.patch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/sambamba/-/compare/2ad5aba1aeecab98ffc736533789990e4daac3d5...725422effe17847483e4e4ff38eff4a76f5c9c9f#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">sambamba</span> <span class="p">(</span><span class="m" style="color: #099;">0.7.1</span><span class="p">-</span><span class="m" style="color: #099;">5</span><span class="p">)</span> <span class="n" style="color: #333;">UNRELEASED</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">sambamba</span> <span class="p">(</span><span class="m" style="color: #099;">0.7.1</span><span class="p">-</span><span class="m" style="color: #099;">5</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Team</span> <span class="n" style="color: #333;">upload</span><span class="p">.</span></span>
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2
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"></span>
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3
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="mosel"> <span class="p">[</span> <span class="n" style="color: #333;">Andreas</span> <span class="n" style="color: #333;">Tille</span> <span class="p">]</span></span>
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4
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Respect</span> <span class="n" style="color: #333;">DEB_BUILD_OPTIONS</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">override_dh_auto_test</span> <span class="n" style="color: #333;">target</span> <span class="p">(</span><span class="n" style="color: #333;">routine</span><span class="p">-</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,13 +8,15 @@ sambamba (0.7.1-5) UNRELEASED; urgency=medium</td>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">trailing</span> <span class="n" style="color: #333;">whitespace</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">debian</span><span class="p">/</span><span class="n" style="color: #333;">changelog</span> <span class="p">(</span><span class="n" style="color: #333;">routine</span><span class="p">-</span><span class="n" style="color: #333;">update</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">salsa</span><span class="p">-</span><span class="n" style="color: #333;">ci</span> <span class="n" style="color: #333;">file</span> <span class="p">(</span><span class="n" style="color: #333;">routine</span><span class="p">-</span><span class="n" style="color: #333;">update</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"> <span class="p">*</span> <span class="k" style="font-weight: 600;">Set</span> <span class="n" style="color: #333;">upstream</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">fields</span><span class="p">:</span> <span class="n" style="color: #333;">Bug</span><span class="p">-</span><span class="n" style="color: #333;">Database</span><span class="p">,</span> <span class="n" style="color: #333;">Bug</span><span class="p">-</span><span class="n" style="color: #333;">Submit</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">DEP3</span></span>
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<td class="diff-line-num new old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Lintian</span><span class="p">-</span><span class="n" style="color: #333;">override</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">static</span> <span class="n" style="color: #333;">linking</span></span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="mosel"></span>
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<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="mosel"> <span class="p">[</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">É</span><span class="n" style="color: #333;">tienne</span> <span class="n" style="color: #333;">Mollier</span> <span class="p">]</span></span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Define</span> <span class="n" style="color: #333;">zlib</span> <span class="n" style="color: #333;">dependency</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">meson</span><span class="p">.</span><span class="n" style="color: #333;">build</span><span class="p">.</span> <span class="p">(</span><span class="n" style="color: #333;">Closes</span><span class="p">:</span> <span class="p">#</span><span class="m" style="color: #099;">966914</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
12
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Default</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">libcurl4</span><span class="p">-</span><span class="n" style="color: #333;">gnutls</span><span class="p">-</span><span class="n" style="color: #333;">dev</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">libcurl</span><span class="p">-</span><span class="n" style="color: #333;">dev</span> <span class="n" style="color: #333;">dependency</span><span class="p">.</span> <span class="p">(</span><span class="n" style="color: #333;">Fixes</span></span>
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13
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="mosel"> <span class="n" style="color: #333;">lintian</span> <span class="n" style="color: #333;">virtual</span><span class="p">-</span><span class="k" style="font-weight: 600;">package</span><span class="p">-</span><span class="n" style="color: #333;">depends</span><span class="p">-</span><span class="n" style="color: #333;">without</span><span class="p">-</span><span class="k" style="font-weight: 600;">real</span><span class="p">-</span><span class="k" style="font-weight: 600;">package</span><span class="p">-</span><span class="n" style="color: #333;">depends</span><span class="p">)</span></span>
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14
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="mosel"></span>
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15
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;"><span class="idiff left">Andreas</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Tille</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">tille</span></span><span class="p"><span class="idiff">@</span></span><span class="n" style="color: #333;"><span class="idiff">debian</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">></span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Mon</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">03</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Aug</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2020</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">13</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">40</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">40</span></span><span class="idiff"> </span><span class="p"><span class="idiff">+</span></span><span class="m" style="color: #099;"><span class="idiff right">02</span>00</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="mosel"> <span class="p">--</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;"><span class="idiff left">É</span></span><span class="n" style="color: #333;"><span class="idiff">tienne</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Mollier</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">etienne</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">mollier</span></span><span class="p"><span class="idiff">@</span></span><span class="n" style="color: #333;"><span class="idiff">mailoo</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">></span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Wed</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">11</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Nov</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2020</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">09</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">27</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">56</span></span><span class="idiff"> </span><span class="p"><span class="idiff">+</span></span><span class="m" style="color: #099;"><span class="idiff right">01</span>00</span></span>
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16
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="mosel"></span>
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17
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="mosel"><span class="n" style="color: #333;">sambamba</span> <span class="p">(</span><span class="m" style="color: #099;">0.7.1</span><span class="p">-</span><span class="m" style="color: #099;">4</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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18
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="mosel"></span>
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<a href="https://salsa.debian.org/med-team/sambamba/-/compare/2ad5aba1aeecab98ffc736533789990e4daac3d5...725422effe17847483e4e4ff38eff4a76f5c9c9f#efc7fe57b5983b0283c6410fceef7e74f687aeb5"><strong>debian/lintian-overrides</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"># This is probably due to the linking of htslib</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">sambamba: embedded-library usr/bin/sambamba: bzip2</span></pre>
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<a href="https://salsa.debian.org/med-team/sambamba/-/compare/2ad5aba1aeecab98ffc736533789990e4daac3d5...725422effe17847483e4e4ff38eff4a76f5c9c9f#b2c11cae808d189b07b3396afcf8f9c078d53b43"><strong>debian/patches/MakefilePointerToStaticLib.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Steffen Moeller</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: 2020-07-04 19:22:38 +0200</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Find static libs in multiarch places</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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1
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">Index: sambamba/Makefile</span>
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2
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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3
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- sambamba.orig/Makefile</span></span>
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<a href="https://salsa.debian.org/med-team/sambamba/-/compare/2ad5aba1aeecab98ffc736533789990e4daac3d5...725422effe17847483e4e4ff38eff4a76f5c9c9f#f5dabfb9f6cd3500eb37cd14d78769dca57b83bf"><strong>debian/patches/sam_hdr_parse_2sam_hdr_parse.patch</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Steffen Moeller</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: 2020-07-04 19:22:38 +0200</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Fix build by some type castings</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">Index: sambamba/cram/writer.d</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- sambamba.orig/cram/writer.d</span></span>
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