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<h3>
Pierre Gruet pushed to branch master
at <a href="https://salsa.debian.org/med-team/artemis">Debian Med / artemis</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/artemis/-/commit/4ae17fff02e2489abec2cd54159e392392951111">4ae17fff</a></strong>
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<span>by Pierre Gruet</span>
<i>at 2020-11-12T15:47:58+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Marking current autopkgtest as superficial
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<strong><a href="https://salsa.debian.org/med-team/artemis/-/commit/18aeaafc99104949e1aa248cc35f8abfae738347">18aeaafc</a></strong>
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<span>by Pierre Gruet</span>
<i>at 2020-11-12T21:45:17+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding an autopkgtest running some build tests
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<h4>3 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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debian/tests/control
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debian/tests/run-some-unit-tests
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/artemis/-/compare/6ff1b0d7b2031d7c0bd6f31b79349913df466500...18aeaafc99104949e1aa248cc35f8abfae738347#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">artemis (18.1.0+dfsg-2) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Marking current autopkgtest as superficial (Closes: #974437)</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Adding an autopkgtest running some build tests</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Pierre Gruet <pgtdebian@free.fr> Thu, 12 Nov 2020 21:44:47 +0100</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">artemis (18.1.0+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<li id="83223a554d33ba7e1888274ff8ac43adb8147ba0">
<a href="https://salsa.debian.org/med-team/artemis/-/compare/6ff1b0d7b2031d7c0bd6f31b79349913df466500...18aeaafc99104949e1aa248cc35f8abfae738347#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Test-Command: xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" /usr/bin/bamview -h</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Depends: @, xvfb, xauth</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr, superficial</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Tests: run-some-unit-tests</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Depends: @, default-jdk, junit4, libmockito-java</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Restrictions: allow-stderr</span></pre>
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<a href="https://salsa.debian.org/med-team/artemis/-/compare/6ff1b0d7b2031d7c0bd6f31b79349913df466500...18aeaafc99104949e1aa248cc35f8abfae738347#c5bb453025139c6c27fffc2b83d2ba1b570ac0ed"><strong>debian/tests/run-some-unit-tests</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-e</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># autopkgtest check: run some unit tests. Some other tests try to launch X11</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># or connect through ssh, having the selected one run should be good enough.</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># (C) 2020 Pierre Gruet.</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Author: Pierre Gruet <pgtdebian@free.fr></span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span>artemis</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">LC_ALL</span><span class="o" style="font-weight: 600;">=</span>C.UTF-8</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="si" style="color: #d14;">)</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> src/ <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd </span>src/test/java/</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Putting the way to the installed jar in the classpath.</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">CLASSPATH</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$CLASSPATH</span>:.:/usr/share/java/artemis.jar:/usr/share/java/junit4.jar:/usr/share/java/mockito-core.jar</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;"><<</span><span class="no" style="color: #008080;">EOF</span><span class="sh" style="color: #d14;"> > JunitTestSuite.java</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="shell"><span class="sh" style="color: #d14;">import org.junit.runner.RunWith;</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="shell"><span class="sh" style="color: #d14;">import org.junit.runners.Suite;</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="shell"><span class="sh" style="color: #d14;">@RunWith(Suite.class)</span></span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="shell"><span class="sh" style="color: #d14;">@Suite.SuiteClasses({</span></span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="shell"><span class="sh" style="color: #d14;"> uk.ac.sanger.artemis.util.IconManagerTest.class,</span></span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="shell"><span class="sh" style="color: #d14;"> uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest.class,</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="shell"><span class="sh" style="color: #d14;"> uk.ac.sanger.artemis.circular.digest.UtilsTest.class</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="shell"><span class="sh" style="color: #d14;">})</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="shell"><span class="sh" style="color: #d14;">public class JunitTestSuite { </span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="shell"><span class="sh" style="color: #d14;">} </span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="shell"><span class="no" style="color: #008080;">EOF</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Create runner class</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;"><<</span><span class="no" style="color: #008080;">EOF</span><span class="sh" style="color: #d14;"> > TestRunner.java</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="shell"><span class="sh" style="color: #d14;">import org.junit.runner.JUnitCore;</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="shell"><span class="sh" style="color: #d14;">import org.junit.runner.Result;</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="shell"><span class="sh" style="color: #d14;">import org.junit.runner.notification.Failure;</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="shell"><span class="sh" style="color: #d14;">public class TestRunner {</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="shell"><span class="sh" style="color: #d14;"> public static void main(String[] args) {</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="shell"><span class="sh" style="color: #d14;"> Result result = JUnitCore.runClasses(JunitTestSuite.class);</span></span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="shell"><span class="sh" style="color: #d14;"> </span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="shell"><span class="sh" style="color: #d14;"> for (Failure failure : result.getFailures()) {</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="shell"><span class="sh" style="color: #d14;"> System.out.println(failure.toString());</span></span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="shell"><span class="sh" style="color: #d14;"> }</span></span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="shell"><span class="sh" style="color: #d14;"> </span></span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="shell"><span class="sh" style="color: #d14;"> if (result.getFailureCount() > 0)</span></span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="shell"><span class="sh" style="color: #d14;"> System.exit(1);</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="shell"><span class="sh" style="color: #d14;"> }</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="shell"><span class="sh" style="color: #d14;">} </span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="shell"><span class="no" style="color: #008080;">EOF</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Building test classes.</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="shell">javac <span class="sb" style="color: #d14;">`</span>find <span class="nb" style="color: #0086b3;">.</span> <span class="nt" style="color: #000080;">-name</span> <span class="s2" style="color: #d14;">"*.java"</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Running the tests</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="shell">java <span class="nt" style="color: #000080;">-Xmx4g</span> <span class="nt" style="color: #000080;">-noverify</span> <span class="nt" style="color: #000080;">-Djdbc</span>.drivers<span class="o" style="font-weight: 600;">=</span>org.postgresql.Driver <span class="nt" style="color: #000080;">-DEMBOSS_ROOT</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"/usr"</span> <span class="nt" style="color: #000080;">--illegal-access</span><span class="o" style="font-weight: 600;">=</span>warn <span class="nt" style="color: #000080;">-Dtimeout</span><span class="o" style="font-weight: 600;">=</span>8000 <span class="nt" style="color: #000080;">-Duse_separate_classloader</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">false </span>TestRunner</span></pre>
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