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GitLab

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<h3>

Étienne Mollier pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/libmaus2">Debian Med / libmaus2</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/69e4d5717fff7bb4308988d526e5d8767474c3c1">69e4d571</a></strong>

<div>

<span>by Étienne Mollier</span>

<i>at 2020-11-17T19:35:57+01:00</i>

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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.766+dfsg</pre>

</li>

</ul>

<h4>30 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">

ChangeLog

</a>

</li>

<li class="file-stats">

<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">

configure.ac

</a>

</li>

<li class="file-stats">

<a href="#67e794015a01b8816bd16290e5f8538236da8245">

src/Makefile.am

</a>

</li>

<li class="file-stats">

<a href="#4f8c67bed66fa0b20ed787b42b2634c965593a6d">

src/libmaus2/StaticInitialization.cpp

</a>

</li>

<li class="file-stats">

<a href="#3e7587d311ee1c4f4ce78ad964baa1243bc0294c">

src/libmaus2/aio/CircularBuffer.hpp

</a>

</li>

<li class="file-stats">

<a href="#0ee9e343f9f220f316189fe315bab4e2f0f06444">

src/libmaus2/aio/CompactEncoder4.hpp

</a>

</li>

<li class="file-stats">

<a href="#6189b27b0f406279b3e1434c81ad82b5893bbd9a">

src/libmaus2/aio/FileFragment.hpp

</a>

</li>

<li class="file-stats">

<a href="#309972c4ea21553acced1e20e977005f1d0d82a9">

src/libmaus2/aio/GetLength.hpp

</a>

</li>

<li class="file-stats">

<a href="#fca2d814bc7af403f42706424d86ad29950e3f1e">

src/libmaus2/aio/InputStreamInstanceAtOffset.hpp

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<li class="file-stats">

<a href="#f9860f6dd5b61bcb568662f298efd6b2e8005f76">

src/libmaus2/util/CommandContainer.cpp

→

src/libmaus2/aio/SecrecyCache.hpp

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</li>

<li class="file-stats">

<a href="#d3197730e42376c8aba04f47ac62df207f3a21fe">

src/libmaus2/aio/SecrecyInputStreamFactory.cpp

</a>

</li>

<li class="file-stats">

<a href="#dde05472484d3614c53017ce01e5979bc70f2c2a">

src/libmaus2/aio/SecrecyOutputStreamFactory.cpp

</a>

</li>

<li class="file-stats">

<a href="#81510fe2b4e285ed2b339a7b33b7638f6e90dac2">

src/libmaus2/aio/SynchronousGenericOutput.hpp

</a>

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<li class="file-stats">

<a href="#b19fd00a169fb8e92a36f318f086e809fedaf765">

src/libmaus2/aio/URLObject.hpp

</a>

</li>

<li class="file-stats">

<a href="#bd763f31b698f4e8a9c0b5fb6205c8f754241645">

src/libmaus2/autoarray/AutoArray.hpp

</a>

</li>

<li class="file-stats">

<a href="#5092c9a5f0937973b6026936294b932391b3c71c">

src/libmaus2/bambam/BamNumericalIndexGenerator.hpp

</a>

</li>

<li class="file-stats">

<a href="#00f7a5ad60a46e1ae2ef3ea7eaeb969247a18ac4">

src/libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp

</a>

</li>

<li class="file-stats">

<a href="#acda0a2cee41eda296a9fffd7fae267dd601a801">

src/libmaus2/bambam/ReadEndsContainer.hpp

</a>

</li>

<li class="file-stats">

<a href="#73b86e098141200e9a8aa1322e25644d03feeac6">

src/libmaus2/bitio/CompactDecoderBuffer.hpp

</a>

</li>

<li class="file-stats">

<a href="#17b4743aa053ab0eb9cb7e3033440ac302b4818a">

src/libmaus2/bitio/OutputBuffer.hpp

</a>

</li>

<li class="file-stats">

<a href="#eaa77d38a03d94670765918e5bad9693d4ca3e62">

src/libmaus2/bitio/PacDecoderBuffer.hpp

</a>

</li>

<li class="file-stats">

<a href="#02768b04281ee666d5d631c0feb8afa63f4b4a98">

src/libmaus2/clustering/ProduceEdgeRequest.hpp

</a>

</li>

<li class="file-stats">

<a href="#8874a003d56d622dbdcf2f7a4dd015b9dd82c188">

src/libmaus2/dazzler/align/AlignmentFileSymmetryCheck.hpp

</a>

</li>

<li class="file-stats">

<a href="#85e12b771d788b19cccf645f975bd6760485c24e">

src/libmaus2/dazzler/align/AlignmentWriter.hpp

</a>

</li>

<li class="file-stats">

<a href="#8207595375d9ee68b4ed1ae87a3f99b0ec5de51f">

src/libmaus2/dazzler/align/LasSort2.hpp

</a>

</li>

<li class="file-stats">

<a href="#1531bf16fabc02050cf0386f6a95ea3b291366a4">

src/libmaus2/dazzler/align/OverlapIndexer.hpp

</a>

</li>

<li class="file-stats">

<a href="#489e73fc36528b39cde08758a6d802a6dce1dc10">

src/libmaus2/dazzler/align/SortingOverlapOutputBuffer.hpp

</a>

</li>

<li class="file-stats">

<a href="#582bd2932d195a77ff915269fbe99550a14de489">

src/libmaus2/fastx/CompactFastDecoder.hpp

</a>

</li>

<li class="file-stats">

<a href="#35a617302cba0e79d27b75a607fcb1b46ee62ff5">

src/libmaus2/fastx/isFastQ.hpp

</a>

</li>

<li class="file-stats">

<a href="#653373b0ac13137e85f8d5101d85b44943f4d3c8">

src/libmaus2/gamma/SparseGammaGapBlockEncoder.hpp

</a>

</li>

</ul>

<h5>The diff was not included because it is too large.</h5>

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