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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/874714d25ca5dd5fdae2226548d92d32b978223e">874714d2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-19T13:45:26+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/874714d25ca5dd5fdae2226548d92d32b978223e#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 19 Nov 2020 <span class="idiff left right">01:42:03</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 19 Nov 2020 <span class="idiff left right">13:42:04</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> dcmtk | 179 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">4</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">5</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 50 | {oncology,practice,his,laboratory,covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">7</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">5</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dcm2niix | 24 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicom3tools | 24 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> htsjdk | 24 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,24 +23,23 @@ Last-Update: Thu, 19 Nov 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> biosig | 12 | {imaging,physics} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> plastimatch | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> king | 11 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> nifticlib | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> vtk-dicom | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> ngs-sdk | 10 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> insighttoolkit4 | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> nifticlib | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> insighttoolkit4 | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> obitools | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> orthanc-webviewer | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> pymia | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> dicompyler | 7 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> ea-utils | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> melting | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> seqsero | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> treeview | 7 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> dicompyler | 6 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> librg-utils-perl | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> multiqc | 6 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> bart-view | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> biojava-live | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> biomaj3-cli | 5 | {cloud} | </span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> bio-tradis | 5 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> elastix | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> libsbml | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> ngs-sdk | 5 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -53,6 +52,7 @@ Last-Update: Thu, 19 Nov 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> bamkit | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> beast-mcmc | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> biomaj3-daemon | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> bio-tradis | 4 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> bitseq | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> clonalframeml | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> clonalorigin | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -62,7 +62,6 @@ Last-Update: Thu, 19 Nov 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> jebl2 | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> lagan | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> lamarc | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> libminc | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> libncl | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> mipe | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> mrs | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -98,6 +97,7 @@ Last-Update: Thu, 19 Nov 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> jellyfish1 | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> jmodeltest | 3 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> libdivsufsort | 3 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> libminc | 3 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> libpal-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> logol | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -120,7 +120,6 @@ Last-Update: Thu, 19 Nov 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> samblaster | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> scrm | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> sga | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="plaintext"> sight | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> soapaligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> soapsnp | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> sprai | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -135,7 +134,6 @@ Last-Update: Thu, 19 Nov 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> emmax | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> gatb-core | 2 | {bio} | </span>
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136
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> ipig | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="plaintext"> libbio-mage-utils-perl | 2 | {bio-dev} | </span>
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137
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> libmuscle | 2 | {bio-dev} | </span>
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> nanosv | 2 | {covid-19,bio} | </span>
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141
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> opencfu | 2 | {laboratory} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -144,6 +142,7 @@ Last-Update: Thu, 19 Nov 2020 01:42:03 +0000</td>
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> pbdagcon | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> plasmidseeker | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> segemehl | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext"> sight | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> srf | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> suitename | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> thesias | 2 | {covid-19,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -159,6 +158,7 @@ Last-Update: Thu, 19 Nov 2020 01:42:03 +0000</td>
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> gatb-core | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> htscodecs | 1 | {bio-dev,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> kmerresistance | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext"> libbio-mage-utils-perl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> libbpp-core | 1 | {bio-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> libbpp-phyl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> libbpp-phyl-omics | 1 | {bio-dev} | </span>
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