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<h3>
Ole Streicher pushed to branch master
at <a href="https://salsa.debian.org/python-team/packages/tifffile">Debian Python Team / packages / tifffile</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/python-team/packages/tifffile/-/commit/345717603807a24c0fccf403a07a7395b2c8cfcb">34571760</a></strong>
<div>
<span>by Ole Streicher</span>
<i>at 2020-11-20T08:48:02+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 20201118</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/python-team/packages/tifffile/-/commit/caa41a51a210e2a97c763e21fecf392738334c54">caa41a51</a></strong>
<div>
<span>by Ole Streicher</span>
<i>at 2020-11-20T08:48:04+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/20201118'
Update to upstream version '20201118'
with Debian dir d14abb670ba92f864b822d0ffa36df8012ccb489</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/python-team/packages/tifffile/-/commit/a07209462028274c98a0261c04c144e2f0fbb7b3">a0720946</a></strong>
<div>
<span>by Ole Streicher</span>
<i>at 2020-11-20T08:53:37+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Rediff patches
Drop Skip-tests-that-require-codec-or-private-data.patch: <REASON>
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/python-team/packages/tifffile/-/commit/1e2cb7a486032b83d3201fbcd054a84b89f31772">1e2cb7a4</a></strong>
<div>
<span>by Ole Streicher</span>
<i>at 2020-11-20T08:56:30+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog for 20201118-1 release
</pre>
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</ul>
<h4>14 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#4990be809a537bf86e4be2fe2e8251c83d8bd129">
CHANGES.rst
</a>
</li>
<li class="file-stats">
<a href="#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf">
PKG-INFO
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<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#8fc3c882df7e60951ede377aba4719bd959ad8c0">
debian/patches/Disable-tests-that-require-remote-files.patch
</a>
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<li class="file-stats">
<a href="#08a78963ed0375c66cd9355408745a1b2f5a79f8">
debian/patches/Don-t-install-lsm2bin.patch
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<li class="file-stats">
<a href="#5c8eaf357996c4182d2d4f064e7dba9683e0c47e">
<span class="deleted-file">
−
debian/patches/Skip-tests-that-require-codec-or-private-data.patch
</span>
</a>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<li class="file-stats">
<a href="#626af34e8204774ea46e20955936146dedc828eb">
tests/conftest.py
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<li class="file-stats">
<a href="#0e68eb77c1fac130dbc2b1470ebea5146df3de0b">
tests/test_tifffile.py
</a>
</li>
<li class="file-stats">
<a href="#624d16e4d51d3d7766973c48f57be57a653d8843">
tifffile.egg-info/PKG-INFO
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</li>
<li class="file-stats">
<a href="#6000dbe87c32bc435db544e8382e5f5b92e11e77">
tifffile.egg-info/requires.txt
</a>
</li>
<li class="file-stats">
<a href="#0897a6ad59d4e84cc745635b88c27baf0a78bd92">
tifffile/tifffile.py
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="4990be809a537bf86e4be2fe2e8251c83d8bd129">
<a href="https://salsa.debian.org/python-team/packages/tifffile/-/compare/5bea9ad9f9caeb54e479da614a97feac4110e3ab...1e2cb7a486032b83d3201fbcd054a84b89f31772#4990be809a537bf86e4be2fe2e8251c83d8bd129"><strong>CHANGES.rst</strong></a>
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1
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<td class="diff-line-num new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Revisions</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2
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<td class="diff-line-num new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">---------</span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">2020.11.18</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Pass 4363 tests.</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Support writing SEPARATED colorspace (#37).</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> Use imagecodecs.deflate if available.</span>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> Fix SCN and NDPI series with Z dimensions.</span>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> Add TiffReader alias for TiffFile.</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> TiffPage.is_volumetric returns True if ImageDepth > 1.</span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> Zarr store getitem returns numpy arrays instead of bytes.</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">2020.10.1</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> Formally deprecate unused TiffFile parameters (scikit-image #4996).</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">2020.9.30</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> Allow to pass additional arguments to compression codecs.</span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> Deprecate TiffWriter.save function (use TiffWriter.write).</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> Deprecate TiffWriter.save compress parameter (use compression).</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> Remove multifile parameter from TiffFile (breaking).</span>
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> Pass all is_flag arguments from imread to TiffFile.</span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> Do not byte-swap JPEG2000, WEBP, PNG, JPEGXR segments in TiffPage.decode.</span>
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">2020.9.29</span>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> Fix reading files produced by ScanImage > 2015 (#29).</span>
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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">2020.9.28</span>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> Derive ZarrStore from MutableMapping.</span>
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<td class="diff-line-num new new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> Support zero shape ZarrTiffStore.</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> Fix ZarrFileStore with non-TIFF files.</span>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> Fix ZarrFileStore with missing files.</span>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> Cache one chunk in ZarrFileStore.</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> Keep track of already opened files in FileCache.</span>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> Change parse_filenames function to return zero-based indices.</span>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
30
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> Remove reopen parameter from asarray (breaking).</span>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> Rename FileSequence.fromfile to imread (breaking).</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">2020.9.22</span>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> Add experimental zarr storage interface (WIP).</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
34
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> Remove unused first dimension from TiffPage.shaped (breaking).</span>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> Move reading of STK planes to series interface (breaking).</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> Always use virtual frames for ScanImage files.</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> Use DimensionOrder to determine axes order in OmeXml.</span>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> Enable writing striped volumetric images.</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> Keep complete dataoffsets and databytecounts for TiffFrames.</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
40
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> Return full size tiles from Tiffpage.segments.</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
41
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> Rename TiffPage.is_sgi property to is_volumetric (breaking).</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
42
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> Rename TiffPageSeries.is_pyramid to is_pyramidal (breaking).</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
43
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> Fix TypeError when passing jpegtables to non-JPEG decode function (#25).</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext">2020.9.3</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> Do not write contiguous series by default (breaking).</span>
</pre>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> Allow to write to SubIFDs (WIP).</span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> Fix writing F-contiguous numpy arrays (#24).</span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">2020.8.25</span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> Do not convert EPICS timeStamp to datetime object.</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> Read incompletely written Micro-Manager image file stack header (#23).</span>
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<td class="diff-line-num new new_line" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> Remove tag 51123 values from TiffFile.micromanager_metadata (breaking).</span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext">2020.8.13</span>
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<td class="diff-line-num new new_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> Use tifffile metadata over OME and ImageJ for TiffFile.series (breaking).</span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> Fix writing iterable of pages with compression (#20).</span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> Expand error checking of TiffWriter data, dtype, shape, and tile arguments.</span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext">2020.7.24</span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> Parse nested OmeXml metadata argument (WIP).</span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> Do not lazy load TiffFrame JPEGTables.</span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> Fix conditionally skipping some tests.</span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext">2020.7.22</span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> Do not auto-enable OME-TIFF if description is passed to TiffWriter.save.</span>
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<td class="diff-line-num new new_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> Raise error writing empty bilevel or tiled images.</span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> Allow to write tiled bilevel images.</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"> Allow to write multi-page TIFF from iterable of single page images (WIP).</span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> Add function to validate OME-XML.</span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> Correct Philips slide width and length.</span>
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3
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<td class="diff-line-num new_line" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
67
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext">2020.7.17</span>
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<td class="diff-line-num old old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
4
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<td class="diff-line-num new_line old" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> Pass 3022 tests.</span>
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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5
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<td class="diff-line-num new_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
68
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> Initial support for writing OME-TIFF (WIP).</span>
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6
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<td class="diff-line-num new_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
69
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> Return samples as separate dimension in OME series (breaking).</span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<td class="diff-line-num new_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
70
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> Fix modulo dimensions for multiple OME series.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,7 +100,7 @@ Revisions</td>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> Fix writing single tiles larger than image data (#3).</span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> Always store ExtraSamples values in tuple (breaking).</span>
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102
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext">2020.5.5</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> Allow to write tiled TIFF from itera<span class="idiff left right">tor</span> of tiles (WIP).</span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> Allow to write tiled TIFF from itera<span class="idiff left right">ble</span> of tiles (WIP).</span>
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41
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104
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> Add function to iterate over decoded segments of TiffPage (WIP).</span>
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42
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105
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> Pass chunks of segments to ThreadPoolExecutor.map to reduce memory usage.</span>
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> Fix reading invalid files with too many strips.</span>
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<a href="https://salsa.debian.org/python-team/packages/tifffile/-/compare/5bea9ad9f9caeb54e479da614a97feac4110e3ab...1e2cb7a486032b83d3201fbcd054a84b89f31772#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf"><strong>PKG-INFO</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Metadata</span><span class="p">-</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2.1</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="mosel"><span class="n" style="color: #333;">Name</span><span class="p">:</span> <span class="n" style="color: #333;">tifffile</span></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="mosel"><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">7.17</span></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">11.18</span></span></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"><span class="n" style="color: #333;">Summary</span><span class="p">:</span> <span class="n" style="color: #333;">Read</span> <span class="k" style="font-weight: 600;">and</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">TIFF</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span> <span class="n" style="color: #333;">files</span></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="mosel"><span class="n" style="color: #333;">Home</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">lfd</span><span class="p">.</span><span class="n" style="color: #333;">uci</span><span class="p">.</span><span class="n" style="color: #333;">edu</span><span class="p">/~</span><span class="n" style="color: #333;">gohlke</span><span class="p">/</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="mosel"><span class="n" style="color: #333;">Author</span><span class="p">:</span> <span class="n" style="color: #333;">Christoph</span> <span class="n" style="color: #333;">Gohlke</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,23 +20,25 @@ Description: Read and write TIFF(r) files</td>
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="mosel"> <span class="n" style="color: #333;">NIHImage</span><span class="p">,</span> <span class="n" style="color: #333;">ImageJ</span><span class="p">,</span> <span class="n" style="color: #333;">MicroManager</span><span class="p">,</span> <span class="n" style="color: #333;">FluoView</span><span class="p">,</span> <span class="n" style="color: #333;">ScanImage</span><span class="p">,</span> <span class="n" style="color: #333;">SEQ</span><span class="p">,</span> <span class="n" style="color: #333;">GEL</span><span class="p">,</span> <span class="n" style="color: #333;">SVS</span><span class="p">,</span> <span class="n" style="color: #333;">SCN</span><span class="p">,</span> <span class="n" style="color: #333;">SIS</span><span class="p">,</span></span>
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="mosel"> <span class="n" style="color: #333;">ZIF</span> <span class="p">(</span><span class="n" style="color: #333;">Zoomable</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">),</span> <span class="n" style="color: #333;">QPTIFF</span> <span class="p">(</span><span class="n" style="color: #333;">QPI</span><span class="p">),</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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22
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="mosel"> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">data</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="nb" style="color: #0086b3;">read</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">zarr</span> <span class="n" style="color: #333;">arrays</span><span class="p">/</span><span class="n" style="color: #333;">groups</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">strips</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">tiles</span><span class="p">,</span> <span class="n" style="color: #333;">pages</span> <span class="p">(</span><span class="n" style="color: #333;">IFDs</span><span class="p">),</span> <span class="n" style="color: #333;">SubIFDs</span><span class="p">,</span> <span class="n" style="color: #333;">higher</span> <span class="n" style="color: #333;">order</span> <span class="n" style="color: #333;">series</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">levels</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="mosel"> <span class="n" style="color: #333;">Numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">written</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">BigTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">hyperstack</span></span>
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24
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<td class="diff-line-num new_line old" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">compatible</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">memory</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">mappable</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">tiled</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">predicted</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff right">or</span></span></span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="mosel"> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">form</span><span class="p">.</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="mosel"> <span class="n" style="color: #333;">compatible</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">volumetric</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">pyramidal</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">memory</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">mappable</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">tiled</span></span><span class="p"><span class="idiff right">,</span></span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">predicted</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">or</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">form</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="mosel"> <span class="n" style="color: #333;">A</span> <span class="n" style="color: #333;">subset</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">specification</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">supported</span><span class="p">,</span> <span class="n" style="color: #333;">mainly</span> <span class="n" style="color: #333;">uncompressed</span> <span class="k" style="font-weight: 600;">and</span></span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="mosel"> <span class="n" style="color: #333;">losslessly</span> <span class="n" style="color: #333;">compressed</span> <span class="m" style="color: #099;">8</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="k" style="font-weight: 600;">integer</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">float</span><span class="p">,</span></span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="mosel"> <span class="n" style="color: #333;">grayscale</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">sample</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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30
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<td class="diff-line-num new_line old" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="mosel"> <span class="n" style="color: #333;">Specifically</span><span class="p">,</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">slices</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">CCITT</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">OJPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">,</span></span>
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31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="mosel"> <span class="n" style="color: #333;">chroma</span> <span class="n" style="color: #333;">subsampling</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">,</span> <span class="n" style="color: #333;">color</span> <span class="n" style="color: #333;">space</span> <span class="n" style="color: #333;">transformations</span><span class="p">,</span></span>
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32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="mosel"> <span class="n" style="color: #333;">samples</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">differing</span> <span class="n" style="color: #333;">types</span><span class="p">,</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">IPTC</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">XMP</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">implemented</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="mosel"> <span class="n" style="color: #333;">A</span> <span class="n" style="color: #333;">subset</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">specification</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">supported</span><span class="p">,</span> <span class="n" style="color: #333;">mainly</span> <span class="m" style="color: #099;">8</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">integer</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">float</span><span class="p">,</span> <span class="n" style="color: #333;">grayscale</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">sample</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="mosel"> <span class="n" style="color: #333;">Specifically</span><span class="p">,</span> <span class="n" style="color: #333;">CCITT</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">OJPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">,</span> <span class="n" style="color: #333;">chroma</span> <span class="n" style="color: #333;">subsampling</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">JPEG</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="mosel"> <span class="n" style="color: #333;">compression</span><span class="p">,</span> <span class="n" style="color: #333;">color</span> <span class="n" style="color: #333;">space</span> <span class="n" style="color: #333;">transformations</span><span class="p">,</span> <span class="n" style="color: #333;">samples</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">differing</span> <span class="n" style="color: #333;">types</span><span class="p">,</span> <span class="k" style="font-weight: 600;">or</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="mosel"> <span class="n" style="color: #333;">IPTC</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">XMP</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">implemented</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="mosel"> <span class="n" style="color: #333;">TIFF</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">),</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">Tagged</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">,</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">trademark</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">under</span> <span class="n" style="color: #333;">control</span> <span class="k" style="font-weight: 600;">of</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="mosel"> <span class="n" style="color: #333;">Adobe</span> <span class="n" style="color: #333;">Systems</span> <span class="n" style="color: #333;">Incorporated</span><span class="p">.</span> <span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">allows</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">larger</span> <span class="n" style="color: #333;">than</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span></span>
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<td class="diff-line-num new_line old" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="mosel"> <span class="n" style="color: #333;">STK</span><span class="p">,</span> <span class="n" style="color: #333;">LSM</span><span class="p">,</span> <span class="n" style="color: #333;">FluoView</span><span class="p">,</span> <span class="n" style="color: #333;">SGI</span><span class="p">,</span> <span class="n" style="color: #333;">SEQ</span><span class="p">,</span> <span class="n" style="color: #333;">GEL</span><span class="p">,</span> <span class="n" style="color: #333;">QPTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">custom</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="mosel"> <span class="n" style="color: #333;">STK</span><span class="p">,</span> <span class="n" style="color: #333;">LSM</span><span class="p">,</span> <span class="n" style="color: #333;">FluoView</span><span class="p">,</span> <span class="n" style="color: #333;">SGI</span><span class="p">,</span> <span class="n" style="color: #333;">SEQ</span><span class="p">,</span> <span class="n" style="color: #333;">GEL</span><span class="p">,</span> <span class="n" style="color: #333;">QPTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">SCN</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">custom</span></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="mosel"> <span class="n" style="color: #333;">extensions</span> <span class="n" style="color: #333;">defined</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Devices</span> <span class="p">(</span><span class="n" style="color: #333;">Universal</span> <span class="n" style="color: #333;">Imaging</span> <span class="n" style="color: #333;">Corporation</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="mosel"> <span class="n" style="color: #333;">Carl</span> <span class="n" style="color: #333;">Zeiss</span> <span class="n" style="color: #333;">MicroImaging</span><span class="p">,</span> <span class="n" style="color: #333;">Olympus</span><span class="p">,</span> <span class="n" style="color: #333;">Silicon</span> <span class="n" style="color: #333;">Graphics</span> <span class="n" style="color: #333;">International</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="mosel"> <span class="n" style="color: #333;">Media</span> <span class="n" style="color: #333;">Cybernetics</span><span class="p">,</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Dynamics</span><span class="p">,</span> <span class="n" style="color: #333;">PerkinElmer</span><span class="p">,</span> <span class="n" style="color: #333;">Hamamatsu</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">the</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="mosel"> <span class="n" style="color: #333;">Media</span> <span class="n" style="color: #333;">Cybernetics</span><span class="p">,</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Dynamics</span><span class="p">,</span> <span class="n" style="color: #333;">PerkinElmer</span><span class="p">,</span> <span class="n" style="color: #333;">Hamamatsu</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">Leica</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">the</span></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="mosel"> <span class="n" style="color: #333;">Open</span> <span class="n" style="color: #333;">Microscopy</span> <span class="n" style="color: #333;">Environment</span> <span class="n" style="color: #333;">consortium</span><span class="p">,</span> <span class="n" style="color: #333;">respectively</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="mosel"> <span class="n" style="color: #333;">For</span> <span class="nf" style="color: #900; font-weight: 600;">command</span> <span class="n" style="color: #333;">line</span> <span class="n" style="color: #333;">usage</span> <span class="nf" style="color: #900; font-weight: 600;">run</span> <span class="p">``</span><span class="n" style="color: #333;">python</span> <span class="p">-</span><span class="n" style="color: #333;">m</span> <span class="n" style="color: #333;">tifffile</span> <span class="p">--</span><span class="n" style="color: #333;">help</span><span class="p">``</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -49,26 +51,91 @@ Description: Read and write TIFF(r) files</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="mosel"> <span class="p">:</span><span class="n" style="color: #333;">License</span><span class="p">:</span> <span class="n" style="color: #333;">BSD</span> <span class="m" style="color: #099;">3</span><span class="p">-</span><span class="n" style="color: #333;">Clause</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="mosel"> <span class="p">:</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">7.17</span></span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="mosel"> <span class="p">:</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">11.18</span></span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Requirements</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="mosel"> <span class="p">------------</span></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="mosel"> <span class="n" style="color: #333;">This</span> <span class="n" style="color: #333;">release</span> <span class="n" style="color: #333;">has</span> <span class="n" style="color: #333;">been</span> <span class="n" style="color: #333;">tested</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">following</span> <span class="k" style="font-weight: 600;">requirements</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">dependencies</span></span>
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57
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">may</span> <span class="n" style="color: #333;">work</span><span class="p">):</span></span>
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60
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">CPython</span> <span class="m" style="color: #099;">3.7.<span class="idiff left">8</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.8.4</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.9.0</span></span><span class="n" style="color: #333;"><span class="idiff right">b4</span></span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">python</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Numpy</span> <span class="m" style="color: #099;">1.1<span class="idiff left right">8.5</span></span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">numpy</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">CPython</span> <span class="m" style="color: #099;">3.7.<span class="idiff left">9</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.8.6</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">3.9.0</span></span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">python</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Numpy</span> <span class="m" style="color: #099;">1.1<span class="idiff left right">9.4</span></span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">numpy</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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61
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<td class="diff-line-num new_line" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
63
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Imagecodecs</span> <span class="m" style="color: #099;">2020.5.30</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">imagecodecs</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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62
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<td class="diff-line-num new_line" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="n" style="color: #333;">etc</span><span class="p">.)</span></span>
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63
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Matplotlib</span> <span class="m" style="color: #099;">3.<span class="idiff left right">2.2</span></span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">matplotlib</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Matplotlib</span> <span class="m" style="color: #099;">3.<span class="idiff left right">3.3</span></span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">matplotlib</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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64
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<td class="diff-line-num new_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
66
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">plotting</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Lxml</span> <span class="m" style="color: #099;">4.<span class="idiff left">5.2</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">github</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">com</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">lxml</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff right">lxml</span></span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Lxml</span> <span class="m" style="color: #099;">4.<span class="idiff left">6.1</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">pypi</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">project</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">lxml</span></span><span class="p"><span class="idiff right">/</span>>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">validating</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">printing</span> <span class="n" style="color: #333;">XML</span><span class="p">)</span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Zarr</span> <span class="m" style="color: #099;">2.5.0</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">zarr</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">opening</span> <span class="n" style="color: #333;">zarr</span> <span class="n" style="color: #333;">storage</span><span class="p">)</span></span>
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71
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="mosel"> <span class="n" style="color: #333;">Revisions</span></span>
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69
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="mosel"> <span class="p">---------</span></span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.11.18</span></span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="m" style="color: #099;">4363</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="mosel"> <span class="n" style="color: #333;">Support</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">SEPARATED</span> <span class="n" style="color: #333;">colorspace</span> <span class="p">(#</span><span class="m" style="color: #099;">37</span><span class="p">).</span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">.</span><span class="n" style="color: #333;">deflate</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">available</span><span class="p">.</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">SCN</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">NDPI</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">Z</span> <span class="n" style="color: #333;">dimensions</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">TiffReader</span> <span class="n" style="color: #333;">alias</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="mosel"> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">is_volumetric</span> <span class="n" style="color: #333;">returns</span> <span class="nb" style="color: #0086b3;">True</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ImageDepth</span> <span class="p">></span> <span class="m" style="color: #099;">1.</span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="mosel"> <span class="n" style="color: #333;">Zarr</span> <span class="n" style="color: #333;">store</span> <span class="n" style="color: #333;">getitem</span> <span class="n" style="color: #333;">returns</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="n" style="color: #333;">instead</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">bytes</span><span class="p">.</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.10.1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="mosel"> <span class="n" style="color: #333;">Formally</span> <span class="n" style="color: #333;">deprecate</span> <span class="n" style="color: #333;">unused</span> <span class="n" style="color: #333;">TiffFile</span> <span class="k" style="font-weight: 600;">parameters</span> <span class="p">(</span><span class="n" style="color: #333;">scikit</span><span class="p">-</span><span class="n" style="color: #333;">image</span> <span class="p">#</span><span class="m" style="color: #099;">4996</span><span class="p">).</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.9.30</span></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">pass</span> <span class="n" style="color: #333;">additional</span> <span class="n" style="color: #333;">arguments</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">compression</span> <span class="n" style="color: #333;">codecs</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="mosel"> <span class="n" style="color: #333;">Deprecate</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="n" style="color: #333;">save</span> <span class="k" style="font-weight: 600;">function</span> <span class="p">(</span><span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="mosel"> <span class="n" style="color: #333;">Deprecate</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="n" style="color: #333;">save</span> <span class="n" style="color: #333;">compress</span> <span class="n" style="color: #333;">parameter</span> <span class="p">(</span><span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">compression</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">multifile</span> <span class="n" style="color: #333;">parameter</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">TiffFile</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="n" style="color: #333;">all</span> <span class="n" style="color: #333;">is_flag</span> <span class="n" style="color: #333;">arguments</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">imread</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">byte</span><span class="p">-</span><span class="n" style="color: #333;">swap</span> <span class="n" style="color: #333;">JPEG2000</span><span class="p">,</span> <span class="n" style="color: #333;">WEBP</span><span class="p">,</span> <span class="n" style="color: #333;">PNG</span><span class="p">,</span> <span class="n" style="color: #333;">JPEGXR</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">decode</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.9.29</span></span>
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<td class="diff-line-num new new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">produced</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">ScanImage</span> <span class="p">></span> <span class="m" style="color: #099;">2015</span> <span class="p">(#</span><span class="m" style="color: #099;">29</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.9.28</span></span>
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<td class="diff-line-num new new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="mosel"> <span class="n" style="color: #333;">Derive</span> <span class="n" style="color: #333;">ZarrStore</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">MutableMapping</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="mosel"> <span class="n" style="color: #333;">Support</span> <span class="n" style="color: #333;">zero</span> <span class="n" style="color: #333;">shape</span> <span class="n" style="color: #333;">ZarrTiffStore</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">ZarrFileStore</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">ZarrFileStore</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">missing</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="mosel"> <span class="n" style="color: #333;">Cache</span> <span class="n" style="color: #333;">one</span> <span class="n" style="color: #333;">chunk</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">ZarrFileStore</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="mosel"> <span class="n" style="color: #333;">Keep</span> <span class="n" style="color: #333;">track</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">already</span> <span class="n" style="color: #333;">opened</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">FileCache</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="mosel"> <span class="n" style="color: #333;">Change</span> <span class="n" style="color: #333;">parse_filenames</span> <span class="k" style="font-weight: 600;">function</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">return</span> <span class="n" style="color: #333;">zero</span><span class="p">-</span><span class="n" style="color: #333;">based</span> <span class="n" style="color: #333;">indices</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">reopen</span> <span class="n" style="color: #333;">parameter</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">asarray</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">FileSequence</span><span class="p">.</span><span class="n" style="color: #333;">fromfile</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">imread</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.9.22</span></span>
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<td class="diff-line-num new new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">experimental</span> <span class="n" style="color: #333;">zarr</span> <span class="n" style="color: #333;">storage</span> <span class="n" style="color: #333;">interface</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">unused</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">dimension</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">shaped</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="mosel"> <span class="n" style="color: #333;">Move</span> <span class="n" style="color: #333;">reading</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">STK</span> <span class="n" style="color: #333;">planes</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">series</span> <span class="n" style="color: #333;">interface</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="mosel"> <span class="n" style="color: #333;">Always</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">virtual</span> <span class="n" style="color: #333;">frames</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">ScanImage</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">DimensionOrder</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">determine</span> <span class="n" style="color: #333;">axes</span> <span class="n" style="color: #333;">order</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">OmeXml</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="mosel"> <span class="n" style="color: #333;">Enable</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">striped</span> <span class="n" style="color: #333;">volumetric</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="mosel"> <span class="n" style="color: #333;">Keep</span> <span class="n" style="color: #333;">complete</span> <span class="n" style="color: #333;">dataoffsets</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">databytecounts</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TiffFrames</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">full</span> <span class="n" style="color: #333;">size</span> <span class="n" style="color: #333;">tiles</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">Tiffpage</span><span class="p">.</span><span class="n" style="color: #333;">segments</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">is_sgi</span> <span class="n" style="color: #333;">property</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">is_volumetric</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">TiffPageSeries</span><span class="p">.</span><span class="n" style="color: #333;">is_pyramid</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">is_pyramidal</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">TypeError</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">passing</span> <span class="n" style="color: #333;">jpegtables</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">decode</span> <span class="k" style="font-weight: 600;">function</span> <span class="p">(#</span><span class="m" style="color: #099;">25</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.9.3</span></span>
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<td class="diff-line-num new new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">contiguous</span> <span class="n" style="color: #333;">series</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">default</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">SubIFDs</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">F</span><span class="p">-</span><span class="n" style="color: #333;">contiguous</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="p">(#</span><span class="m" style="color: #099;">24</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.8.25</span></span>
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<td class="diff-line-num new new_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">convert</span> <span class="n" style="color: #333;">EPICS</span> <span class="n" style="color: #333;">timeStamp</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">datetime</span> <span class="n" style="color: #333;">object</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">incompletely</span> <span class="n" style="color: #333;">written</span> <span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">stack</span> <span class="n" style="color: #333;">header</span> <span class="p">(#</span><span class="m" style="color: #099;">23</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">tag</span> <span class="m" style="color: #099;">51123</span> <span class="n" style="color: #333;">values</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span><span class="n" style="color: #333;">micromanager_metadata</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.8.13</span></span>
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<td class="diff-line-num new new_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">tifffile</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">over</span> <span class="n" style="color: #333;">OME</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span><span class="n" style="color: #333;">series</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">iterable</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">pages</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">compression</span> <span class="p">(#</span><span class="m" style="color: #099;">20</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="mosel"> <span class="n" style="color: #333;">Expand</span> <span class="n" style="color: #333;">error</span> <span class="n" style="color: #333;">checking</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TiffWriter</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tile</span> <span class="n" style="color: #333;">arguments</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.7.24</span></span>
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<td class="diff-line-num new new_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="mosel"> <span class="n" style="color: #333;">Parse</span> <span class="n" style="color: #333;">nested</span> <span class="n" style="color: #333;">OmeXml</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">argument</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">lazy</span> <span class="nf" style="color: #900; font-weight: 600;">load</span> <span class="n" style="color: #333;">TiffFrame</span> <span class="n" style="color: #333;">JPEGTables</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">conditionally</span> <span class="n" style="color: #333;">skipping</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.7.22</span></span>
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<td class="diff-line-num new new_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">auto</span><span class="p">-</span><span class="n" style="color: #333;">enable</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">description</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">passed</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="mosel"> <span class="n" style="color: #333;">Raise</span> <span class="n" style="color: #333;">error</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">empty</span> <span class="n" style="color: #333;">bilevel</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">bilevel</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">iterable</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">single</span> <span class="n" style="color: #333;">page</span> <span class="n" style="color: #333;">images</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="k" style="font-weight: 600;">function</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">validate</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="mosel"> <span class="n" style="color: #333;">Correct</span> <span class="n" style="color: #333;">Philips</span> <span class="n" style="color: #333;">slide</span> <span class="n" style="color: #333;">width</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">length</span><span class="p">.</span></span>
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70
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.7.17</span></span>
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71
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<td class="diff-line-num new_line old" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="m" style="color: #099;">3022</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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72
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<td class="diff-line-num new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="mosel"> <span class="n" style="color: #333;">Initial</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
73
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<td class="diff-line-num new_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">samples</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">dimension</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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74
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">modulo</span> <span class="n" style="color: #333;">dimensions</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">multiple</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -104,7 +171,7 @@ Description: Read and write TIFF(r) files</td>
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<td class="diff-line-num old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
104
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<td class="diff-line-num new_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">single</span> <span class="n" style="color: #333;">tiles</span> <span class="n" style="color: #333;">larger</span> <span class="n" style="color: #333;">than</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">data</span> <span class="p">(#</span><span class="m" style="color: #099;">3</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
105
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<td class="diff-line-num new_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
172
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="mosel"> <span class="n" style="color: #333;">Always</span> <span class="n" style="color: #333;">store</span> <span class="n" style="color: #333;">ExtraSamples</span> <span class="n" style="color: #333;">values</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tuple</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
106
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<td class="diff-line-num new_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.5.5</span></span>
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<td class="diff-line-num old old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
107
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<td class="diff-line-num new_line old" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">itera<span class="idiff left right">tor</span></span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">itera<span class="idiff left right">ble</span></span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
108
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<td class="diff-line-num new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
175
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="k" style="font-weight: 600;">function</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">iterate</span> <span class="n" style="color: #333;">over</span> <span class="n" style="color: #333;">decoded</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TiffPage</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
109
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<td class="diff-line-num new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="n" style="color: #333;">chunks</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">ThreadPoolExecutor</span><span class="p">.</span><span class="n" style="color: #333;">map</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">reduce</span> <span class="n" style="color: #333;">memory</span> <span class="n" style="color: #333;">usage</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
110
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<td class="diff-line-num new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">invalid</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">too</span> <span class="n" style="color: #333;">many</span> <span class="n" style="color: #333;">strips</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -134,102 +201,6 @@ Description: Read and write TIFF(r) files</td>
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<td class="diff-line-num old_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
134
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<td class="diff-line-num new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">deprecated</span> <span class="n" style="color: #333;">lzw_decode</span> <span class="n" style="color: #333;">functions</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
135
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<td class="diff-line-num new_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">2.7</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">3.5</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
136
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<td class="diff-line-num new_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.7.26</span></span>
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<td class="diff-line-num old old_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
137
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">infinite</span> <span class="n" style="color: #333;">loop</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">more</span> <span class="n" style="color: #333;">than</span> <span class="n" style="color: #333;">two</span> <span class="n" style="color: #333;">tags</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">same</span> <span class="n" style="color: #333;">code</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">IFD</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
138
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="mosel"> <span class="n" style="color: #333;">Delay</span> <span class="n" style="color: #333;">import</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">logging</span> <span class="n" style="color: #333;">module</span><span class="p">.</span></span>
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139
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.7.20</span></span>
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<td class="diff-line-num old old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
140
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span> <span class="n" style="color: #333;">detection</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">created</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">Imaris</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
141
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">replace</span> <span class="nb" style="color: #0086b3;">assert</span> <span class="n" style="color: #333;">statements</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
142
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.7.2</span></span>
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143
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">SampleFormat</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">unsigned</span> <span class="n" style="color: #333;">data</span> <span class="n" style="color: #333;">types</span><span class="p">.</span></span>
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144
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="mosel"> <span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">ByteCount</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">values</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">SHORT</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">LONG</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">possible</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
145
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">specify</span> <span class="n" style="color: #333;">axes</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">FileSequence</span> <span class="n" style="color: #333;">pattern</span> <span class="n" style="color: #333;">via</span> <span class="n" style="color: #333;">group</span> <span class="n" style="color: #333;">names</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
146
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">option</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">concurrently</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">FileSequence</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">threads</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
147
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="mosel"> <span class="n" style="color: #333;">Derive</span> <span class="n" style="color: #333;">TiffSequence</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">FileSequence</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
148
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">str</span><span class="p">(</span><span class="n" style="color: #333;">datetime</span><span class="p">.</span><span class="n" style="color: #333;">timedelta</span><span class="p">)</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">format</span> <span class="n" style="color: #333;">Timer</span> <span class="n" style="color: #333;">duration</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
149
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">perf_counter</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Timer</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">possible</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
150
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.6.18</span></span>
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<td class="diff-line-num old old_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
151
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">planar</span> <span class="n" style="color: #333;">RGB</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">created</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">Bio</span><span class="p">-</span><span class="n" style="color: #333;">Formats</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
152
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">UUID</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
153
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="mosel"> <span class="n" style="color: #333;">Presume</span> <span class="n" style="color: #333;">LSM</span> <span class="n" style="color: #333;">stores</span> <span class="n" style="color: #333;">uncompressed</span> <span class="n" style="color: #333;">images</span> <span class="n" style="color: #333;">contiguously</span> <span class="n" style="color: #333;">per</span> <span class="n" style="color: #333;">page</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
154
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="mosel"> <span class="n" style="color: #333;">Reformat</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">complex</span> <span class="n" style="color: #333;">expressions</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
155
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.5.30</span></span>
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<td class="diff-line-num old old_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
156
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="mosel"> <span class="n" style="color: #333;">Ignore</span> <span class="n" style="color: #333;">invalid</span> <span class="n" style="color: #333;">frames</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
157
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Set</span> <span class="n" style="color: #333;">default</span> <span class="n" style="color: #333;">subsampling</span> <span class="k" style="font-weight: 600;">to</span> <span class="p">(</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">)</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">RGB</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
158
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">planar</span> <span class="n" style="color: #333;">RGB</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
159
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="mosel"> <span class="n" style="color: #333;">Replace</span> <span class="n" style="color: #333;">buffered_read</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">FileHandle</span><span class="p">.</span><span class="n" style="color: #333;">read_segments</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
160
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Include</span> <span class="n" style="color: #333;">page</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">frame</span> <span class="n" style="color: #333;">numbers</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">exceptions</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">warnings</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
161
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">Timer</span> <span class="n" style="color: #333;">class</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
162
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.5.22</span></span>
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<td class="diff-line-num old old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
163
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">optional</span> <span class="n" style="color: #333;">chroma</span> <span class="n" style="color: #333;">subsampling</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
164
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="mosel"> <span class="n" style="color: #333;">Enable</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">PNG</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="n" style="color: #333;">JPEGXR</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">JPEG2K</span> <span class="n" style="color: #333;">compression</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
165
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">images</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">WebP</span> <span class="n" style="color: #333;">compression</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
166
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="mosel"> <span class="n" style="color: #333;">Improve</span> <span class="n" style="color: #333;">handling</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">sparse</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
167
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.3.18</span></span>
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<td class="diff-line-num old old_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
168
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">regression</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">JPEG</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">RGB</span> <span class="n" style="color: #333;">photometrics</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
169
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">corrupted</span> <span class="n" style="color: #333;">but</span> <span class="n" style="color: #333;">unused</span> <span class="n" style="color: #333;">pages</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
170
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nf" style="color: #900; font-weight: 600;">load</span> <span class="n" style="color: #333;">TiffFrame</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">specifying</span> <span class="n" style="color: #333;">keyframe</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
171
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="mosel"> <span class="n" style="color: #333;">Calculate</span> <span class="n" style="color: #333;">virtual</span> <span class="n" style="color: #333;">TiffFrames</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">ScanImage</span> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">2</span><span class="n" style="color: #333;">GB</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
172
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">property</span> <span class="n" style="color: #333;">is_chroma_subsampled</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">is_subsampled</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
173
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="mosel"> <span class="n" style="color: #333;">Make</span> <span class="n" style="color: #333;">more</span> <span class="n" style="color: #333;">attributes</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">methods</span> <span class="n" style="color: #333;">private</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
174
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.3.8</span></span>
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<td class="diff-line-num old old_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
175
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">MemoryError</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">RowsPerStrip</span> <span class="p">></span> <span class="n" style="color: #333;">ImageLength</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
176
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">SyntaxWarning</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">3.8</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
177
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="mosel"> <span class="n" style="color: #333;">Fail</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">decode</span> <span class="n" style="color: #333;">JPEG</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">planar</span> <span class="n" style="color: #333;">RGB</span> <span class="p">(</span><span class="n" style="color: #333;">tentative</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
178
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="mosel"> <span class="n" style="color: #333;">Separate</span> <span class="k" style="font-weight: 600;">public</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">private</span> <span class="n" style="color: #333;">test</span> <span class="n" style="color: #333;">files</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
179
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="n" style="color: #333;">testing</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">data</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
180
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC180" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.2.22</span></span>
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<td class="diff-line-num old old_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
181
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">-</span><span class="n" style="color: #333;">lite</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">fallback</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
182
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="mosel"> <span class="n" style="color: #333;">Simplify</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">file</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
183
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">TiffFrames</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">arrays</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">page</span> <span class="n" style="color: #333;">sequences</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
184
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="mosel"> <span class="n" style="color: #333;">Support</span> <span class="n" style="color: #333;">slices</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">iterators</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">TiffPageSeries</span> <span class="n" style="color: #333;">sequence</span> <span class="n" style="color: #333;">interface</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
185
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="mosel"> <span class="n" style="color: #333;">Auto</span><span class="p">-</span><span class="n" style="color: #333;">detect</span> <span class="n" style="color: #333;">uniform</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
186
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">page</span> <span class="n" style="color: #333;">hash</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">determine</span> <span class="n" style="color: #333;">generic</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
187
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="mosel"> <span class="n" style="color: #333;">Turn</span> <span class="n" style="color: #333;">off</span> <span class="n" style="color: #333;">TiffPages</span> <span class="n" style="color: #333;">cache</span> <span class="p">(</span><span class="n" style="color: #333;">tentative</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
188
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="n" style="color: #333;">through</span> <span class="n" style="color: #333;">more</span> <span class="k" style="font-weight: 600;">parameters</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imread</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
189
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="mosel"> <span class="n" style="color: #333;">Discontinue</span> <span class="n" style="color: #333;">movie</span> <span class="n" style="color: #333;">parameter</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imread</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">TiffFile</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
190
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="mosel"> <span class="n" style="color: #333;">Discontinue</span> <span class="n" style="color: #333;">bigsize</span> <span class="n" style="color: #333;">parameter</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imwrite</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
191
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="mosel"> <span class="n" style="color: #333;">Raise</span> <span class="n" style="color: #333;">TiffFileError</span> <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">case</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">issues</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">structure</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
192
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span><span class="n" style="color: #333;">ome_metadata</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">XML</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
193
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="mosel"> <span class="n" style="color: #333;">Ignore</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">last</span> <span class="n" style="color: #333;">dimensions</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">stored</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">pages</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
194
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.2.10</span></span>
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<td class="diff-line-num old old_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
195
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="mosel"> <span class="n" style="color: #333;">Assemble</span> <span class="n" style="color: #333;">IFDs</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">memory</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">speed</span><span class="p">-</span><span class="n" style="color: #333;">up</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">slow</span> <span class="n" style="color: #333;">media</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
196
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="mosel"> <span class="n" style="color: #333;">Handle</span> <span class="n" style="color: #333;">discontinued</span> <span class="n" style="color: #333;">arguments</span> <span class="n" style="color: #333;">fastij</span><span class="p">,</span> <span class="n" style="color: #333;">multifile_close</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">pages</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
197
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.1.30</span></span>
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<td class="diff-line-num old old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
198
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">black</span> <span class="n" style="color: #333;">background</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imshow</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
199
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">datetime</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">default</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
200
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">SamplesPerPixel</span> <span class="p">></span> <span class="m" style="color: #099;">1.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
201
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<pre style="margin: 0;">-<span id="LC201" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">IFD</span> <span class="n" style="color: #333;">offsets</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">NDPI</span> <span class="p">(</span><span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">4</span><span class="n" style="color: #333;">GB</span> <span class="n" style="color: #333;">still</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">supported</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
202
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.1.4</span></span>
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203
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">deflate</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">.</span></span>
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204
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.1.1</span></span>
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<td class="diff-line-num old old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
205
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="mosel"> <span class="n" style="color: #333;">Update</span> <span class="n" style="color: #333;">copyright</span> <span class="n" style="color: #333;">year</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
206
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="mosel"> <span class="n" style="color: #333;">Require</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="p">>=</span> <span class="m" style="color: #099;">2018.12.16</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
207
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">tables</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">keyframe</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
208
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="mosel"> <span class="n" style="color: #333;">Enable</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">large</span> <span class="n" style="color: #333;">JPEG</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">NDPI</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
209
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="mosel"> <span class="n" style="color: #333;">Decode</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">old</span><span class="p">-</span><span class="n" style="color: #333;">style</span> <span class="n" style="color: #333;">JPEG</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
210
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="mosel"> <span class="n" style="color: #333;">Reorder</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">channel</span> <span class="n" style="color: #333;">axis</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">match</span> <span class="n" style="color: #333;">PlanarConfiguration</span> <span class="n" style="color: #333;">storage</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
211
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">images</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">contiguous</span> <span class="n" style="color: #333;">arrays</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
212
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">decode_lzw</span> <span class="n" style="color: #333;">proxy</span> <span class="k" style="font-weight: 600;">function</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">compatibility</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">old</span> <span class="n" style="color: #333;">czifile</span> <span class="n" style="color: #333;">module</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
213
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC213" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">dedicated</span> <span class="n" style="color: #333;">logger</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
214
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="mosel"> <span class="m" style="color: #099;">2018.11.28</span></span>
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<td class="diff-line-num old old_line" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
215
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC215" class="line" lang="mosel"> <span class="n" style="color: #333;">Make</span> <span class="n" style="color: #333;">SubIFDs</span> <span class="n" style="color: #333;">accessible</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
216
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="mosel"> <span class="n" style="color: #333;">Make</span> <span class="n" style="color: #333;">parsing</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TiffSequence</span> <span class="n" style="color: #333;">axes</span> <span class="n" style="color: #333;">pattern</span> <span class="n" style="color: #333;">optional</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
217
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC217" class="line" lang="mosel"> <span class="n" style="color: #333;">Limit</span> <span class="n" style="color: #333;">parsing</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TiffSequence</span> <span class="n" style="color: #333;">axes</span> <span class="n" style="color: #333;">pattern</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">names</span><span class="p">,</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">path</span> <span class="n" style="color: #333;">names</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
218
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">interpolate</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imshow</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">dimensions</span> <span class="p"><=</span> <span class="m" style="color: #099;">512</span><span class="p">,</span> <span class="k" style="font-weight: 600;">else</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">bilinear</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
219
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">logging</span><span class="p">.</span><span class="n" style="color: #333;">warning</span> <span class="n" style="color: #333;">instead</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">warnings</span><span class="p">.</span><span class="n" style="color: #333;">warn</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">many</span> <span class="n" style="color: #333;">cases</span><span class="p">.</span></span>
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220
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">FutureWarning</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">out</span> <span class="p">==</span> <span class="s1" style="color: #d14;">'memmap'</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
221
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="mosel"> <span class="n" style="color: #333;">Adjust</span> <span class="n" style="color: #333;">ZSTD</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">WebP</span> <span class="n" style="color: #333;">compression</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">libtiff</span><span class="p">-</span><span class="m" style="color: #099;">4.0.10</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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222
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<pre style="margin: 0;">-<span id="LC222" class="line" lang="mosel"> <span class="n" style="color: #333;">Decode</span> <span class="n" style="color: #333;">old</span><span class="p">-</span><span class="n" style="color: #333;">style</span> <span class="n" style="color: #333;">LZW</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="p">>=</span> <span class="m" style="color: #099;">2018.11.8</span><span class="p">.</span></span>
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223
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<pre style="margin: 0;">-<span id="LC223" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span><span class="n" style="color: #333;">qptiff_metadata</span> <span class="p">(</span><span class="n" style="color: #333;">QPI</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">per</span> <span class="n" style="color: #333;">page</span><span class="p">).</span></span>
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224
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">keyword</span> <span class="n" style="color: #333;">arguments</span> <span class="n" style="color: #333;">before</span> <span class="n" style="color: #333;">variable</span> <span class="n" style="color: #333;">positional</span> <span class="n" style="color: #333;">arguments</span><span class="p">.</span></span>
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225
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="mosel"> <span class="n" style="color: #333;">Make</span> <span class="n" style="color: #333;">either</span> <span class="n" style="color: #333;">all</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">none</span> <span class="n" style="color: #333;">return</span> <span class="n" style="color: #333;">statements</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">a</span> <span class="k" style="font-weight: 600;">function</span> <span class="n" style="color: #333;">return</span> <span class="n" style="color: #333;">expression</span><span class="p">.</span></span>
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226
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">pytest</span> <span class="n" style="color: #333;">parametrize</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">generate</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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227
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="mosel"> <span class="n" style="color: #333;">Replace</span> <span class="n" style="color: #333;">test</span> <span class="n" style="color: #333;">classes</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">functions</span><span class="p">.</span></span>
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228
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="mosel"> <span class="m" style="color: #099;">2018.11.6</span></span>
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229
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">imsave</span> <span class="k" style="font-weight: 600;">function</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">imwrite</span><span class="p">.</span></span>
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230
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="mosel"> <span class="n" style="color: #333;">Readd</span> <span class="n" style="color: #333;">Python</span> <span class="n" style="color: #333;">implementations</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">packints</span><span class="p">,</span> <span class="n" style="color: #333;">delta</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">bitorder</span> <span class="n" style="color: #333;">codecs</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
231
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<pre style="margin: 0;">-<span id="LC231" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">TiffFrame</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="n" style="color: #333;">AttributeError</span><span class="p">.</span></span>
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232
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="mosel"> <span class="m" style="color: #099;">2018.10.18</span></span>
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233
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204
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="mosel"> <span class="p">...</span></span>
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234
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205
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="mosel"> </span>
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235
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206
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="mosel"> <span class="n" style="color: #333;">Refer</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">CHANGES</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">older</span> <span class="n" style="color: #333;">revisions</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -240,7 +211,7 @@ Description: Read and write TIFF(r) files</td>
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240
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211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="mosel"> </span>
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241
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<td class="diff-line-num new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
212
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="mosel"> <span class="n" style="color: #333;">Tested</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">little</span><span class="p">-</span><span class="n" style="color: #333;">endian</span> <span class="n" style="color: #333;">platforms</span> <span class="n" style="color: #333;">only</span><span class="p">.</span></span>
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242
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213
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="mosel"> </span>
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243
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<td class="diff-line-num new_line old" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC243" class="line" lang="mosel"> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">deprecated</span><span class="p">.</span> <span class="n" style="color: #333;">Python</span> <span class="p"><=</span> <span class="m" style="color: #099;">3.<span class="idiff left right">6</span></span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">no</span> <span class="n" style="color: #333;">longer</span> <span class="n" style="color: #333;">supported</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
214
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="mosel"> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">deprecated</span><span class="p">.</span> <span class="n" style="color: #333;">Python</span> <span class="p"><=</span> <span class="m" style="color: #099;">3.<span class="idiff left right">7</span></span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">no</span> <span class="n" style="color: #333;">longer</span> <span class="n" style="color: #333;">supported</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
244
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<td class="diff-line-num new_line" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
215
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="mosel"> </span>
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245
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<td class="diff-line-num new_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
216
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="mosel"> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">relies</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">the</span> <span class="p">`</span><span class="n" style="color: #333;">imagecodecs</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">imagecodecs</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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246
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<td class="diff-line-num new_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
217
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">image</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -262,17 +233,24 @@ Description: Read and write TIFF(r) files</td>
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<td class="diff-line-num old_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
262
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<td class="diff-line-num new_line" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
233
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="mosel"> <span class="n" style="color: #333;">tag</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">IFD</span> <span class="n" style="color: #333;">defines</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">position</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">IFDs</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">high</span></span>
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<td class="diff-line-num old_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
263
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<td class="diff-line-num new_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
234
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="mosel"> <span class="n" style="color: #333;">dimensional</span> <span class="n" style="color: #333;">data</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">,</span> <span class="n" style="color: #333;">except</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span></span>
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<td class="diff-line-num old_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
264
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<td class="diff-line-num new_line" data-linenumber="235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
235
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="mosel"> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">stored</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">file</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span></span>
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<td class="diff-line-num old old_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
265
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<td class="diff-line-num new_line old" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC265" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">non</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">pyramidal</span></span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span></span>
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<td class="diff-line-num new old_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
236
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
266
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<td class="diff-line-num new_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
237
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">LSM</span><span class="p">*</span> <span class="n" style="color: #333;">stores</span> <span class="n" style="color: #333;">all</span> <span class="n" style="color: #333;">IFDs</span> <span class="n" style="color: #333;">below</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="n" style="color: #333;">but</span> <span class="n" style="color: #333;">wraps</span> <span class="n" style="color: #333;">around</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">StripOffsets</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
267
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<td class="diff-line-num new_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="mosel"> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">StripOffsets</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">each</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">position</span> <span class="n" style="color: #333;">require</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">unwrapping</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
268
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<td class="diff-line-num new_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
239
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="mosel"> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">StripByteCounts</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">contains</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">number</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">bytes</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">uncompressed</span></span>
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<td class="diff-line-num old_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
269
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<td class="diff-line-num new_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
240
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="mosel"> <span class="n" style="color: #333;">data</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">large</span> <span class="n" style="color: #333;">LSM</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num new old_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
241
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">STK</span><span class="p">*</span> <span class="p">(</span><span class="n" style="color: #333;">MetaMorph</span> <span class="n" style="color: #333;">Stack</span><span class="p">)</span> <span class="n" style="color: #333;">contains</span> <span class="n" style="color: #333;">additional</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">planes</span> <span class="n" style="color: #333;">stored</span> <span class="n" style="color: #333;">contiguously</span></span>
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<td class="diff-line-num new old_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
242
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="mosel"> <span class="n" style="color: #333;">after</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">data</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">page</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">total</span> <span class="n" style="color: #333;">number</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">planes</span></span>
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<td class="diff-line-num new new_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="mosel"> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">equal</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">counts</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">UIC2tag</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">STK</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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270
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<td class="diff-line-num new_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">NDPI</span><span class="p">*</span> <span class="k" style="font-weight: 600;">uses</span> <span class="n" style="color: #333;">some</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">header</span><span class="p">,</span> <span class="n" style="color: #333;">IFD</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">structures</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
271
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<td class="diff-line-num new_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
245
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="mosel"> <span class="n" style="color: #333;">Tag</span> <span class="n" style="color: #333;">values</span><span class="p">/</span><span class="n" style="color: #333;">offsets</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">corrected</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">high</span> <span class="n" style="color: #333;">bits</span> <span class="n" style="color: #333;">stored</span> <span class="n" style="color: #333;">after</span> <span class="n" style="color: #333;">IFD</span></span>
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<td class="diff-line-num old_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
272
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<td class="diff-line-num new_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
246
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="mosel"> <span class="n" style="color: #333;">structures</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span><span class="m" style="color: #099;">65536</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">missing</span></span>
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<td class="diff-line-num old_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
273
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<td class="diff-line-num new_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
247
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="mosel"> <span class="n" style="color: #333;">restart</span> <span class="n" style="color: #333;">markers</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">readable</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">libjpeg</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">NDPI</span></span>
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<td class="diff-line-num old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
274
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<td class="diff-line-num new_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="mosel"> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">restart</span> <span class="n" style="color: #333;">markers</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span><span class="m" style="color: #099;">65536</span> <span class="n" style="color: #333;">can</span></span>
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275
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<td class="diff-line-num new_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="mosel"> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">decoded</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="n" style="color: #333;">library</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">Windows</span><span class="p">.</span></span>
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<td class="diff-line-num new old_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
250
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">Philips</span><span class="p">*</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">slides</span> <span class="n" style="color: #333;">store</span> <span class="n" style="color: #333;">wrong</span> <span class="n" style="color: #333;">ImageWidth</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageLength</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">values</span> <span class="n" style="color: #333;">for</span></span>
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<td class="diff-line-num new new_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
251
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="mosel"> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">pages</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">values</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">corrected</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">DICOM_PIXEL_SPACING</span></span>
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<td class="diff-line-num new new_line" data-linenumber="252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
252
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="mosel"> <span class="n" style="color: #333;">attributes</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">XML</span> <span class="n" style="color: #333;">formatted</span> <span class="n" style="color: #333;">description</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">page</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span></span>
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<td class="diff-line-num new new_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
253
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="mosel"> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">Philips</span> <span class="n" style="color: #333;">slides</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
276
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<td class="diff-line-num new_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
254
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">ScanImage</span><span class="p">*</span> <span class="n" style="color: #333;">optionally</span> <span class="n" style="color: #333;">allows</span> <span class="n" style="color: #333;">corrupt</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">2</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">values</span></span>
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<td class="diff-line-num old_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
277
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<td class="diff-line-num new_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
255
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">StripOffsets</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">StripByteCounts</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">recovered</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">constant</span></span>
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<td class="diff-line-num old_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
278
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<td class="diff-line-num new_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
256
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="mosel"> <span class="n" style="color: #333;">differences</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">IFD</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">values</span> <span class="n" style="color: #333;">throughout</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">file</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -299,6 +277,7 @@ Description: Read and write TIFF(r) files</td>
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299
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277
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">ScanImageTiffReaderPython</span></span>
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278
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="mosel"> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">gitlab</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">vidriotech</span><span class="p">/</span><span class="n" style="color: #333;">scanimagetiffreader</span><span class="p">-</span><span class="n" style="color: #333;">python</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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301
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<td class="diff-line-num new_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
279
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">bigtiff</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">bigtiff</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<td class="diff-line-num new new_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Large</span> <span class="n" style="color: #333;">Image</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">girder</span><span class="p">/</span><span class="n" style="color: #333;">large_image</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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302
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<td class="diff-line-num new_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
281
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="mosel"> </span>
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303
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<td class="diff-line-num new_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
282
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="mosel"> <span class="n" style="color: #333;">Some</span> <span class="n" style="color: #333;">libraries</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">tifffile</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">:</span></span>
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<td class="diff-line-num old_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
304
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<td class="diff-line-num new_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
283
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="mosel"> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -308,6 +287,10 @@ Description: Read and write TIFF(r) files</td>
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<td class="diff-line-num old_line" data-linenumber="308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
308
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<td class="diff-line-num new_line" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
287
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="mosel"> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">aicsimageio</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<td class="diff-line-num old_line" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
309
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<td class="diff-line-num new_line" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
288
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">xtiff</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">BodenmillerGroup</span><span class="p">/</span><span class="n" style="color: #333;">xtiff</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<td class="diff-line-num old_line" data-linenumber="310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
310
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<td class="diff-line-num new_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
289
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<pre style="margin: 0;"> <span id="LC289" class="line" lang="mosel"> </span>
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<td class="diff-line-num new old_line" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="mosel"> <span class="n" style="color: #333;">Other</span> <span class="n" style="color: #333;">tools</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">inspecting</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">manipulating</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="mosel"> </span>
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<td class="diff-line-num new old_line" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">tifftools</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">DigitalSlideArchive</span><span class="p">/</span><span class="n" style="color: #333;">tifftools</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="mosel"> </span>
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311
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<td class="diff-line-num new_line" data-linenumber="294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
294
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="mosel"> <span class="n" style="color: #333;">References</span></span>
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<td class="diff-line-num old_line" data-linenumber="312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
312
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<td class="diff-line-num new_line" data-linenumber="295" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
295
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="mosel"> <span class="p">----------</span></span>
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<td class="diff-line-num old_line" data-linenumber="313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
313
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<td class="diff-line-num new_line" data-linenumber="296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
296
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">TIFF</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">Specification</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Supplements</span><span class="p">.</span> <span class="n" style="color: #333;">Adobe</span> <span class="n" style="color: #333;">Systems</span> <span class="n" style="color: #333;">Incorporated</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="373" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="356" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -373,7 +356,7 @@ Description: Read and write TIFF(r) files</td>
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<td class="diff-line-num old_line" data-linenumber="373" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
373
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<td class="diff-line-num new_line" data-linenumber="356" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
356
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<pre style="margin: 0;"> <span id="LC356" class="line" lang="mosel"> <span class="n" style="color: #333;">Save</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">floating</span><span class="p">-</span><span class="n" style="color: #333;">point</span> <span class="k" style="font-weight: 600;">array</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">metadata</span><span class="p">,</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">zlib</span> <span class="n" style="color: #333;">compression</span><span class="p">:</span></span>
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374
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<td class="diff-line-num new_line" data-linenumber="357" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
357
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<pre style="margin: 0;"> <span id="LC357" class="line" lang="mosel"> </span>
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375
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358
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<pre style="margin: 0;"> <span id="LC358" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">,</span> <span class="m" style="color: #099;">301</span><span class="p">,</span> <span class="m" style="color: #099;">219</span><span class="p">).</span><span class="n" style="color: #333;">astype</span><span class="p">(</span><span class="s1" style="color: #d14;">'float32'</span><span class="p">)</span></span>
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376
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<pre style="margin: 0;">-<span id="LC376" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">compress</span><span class="p"><span class="idiff left">=</span></span><span class="m" style="color: #099;"><span class="idiff right">6</span></span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="p">={</span><span class="s1" style="color: #d14;">'axes'</span><span class="p">:</span> <span class="s1" style="color: #d14;">'TZCYX'</span><span class="p">})</span></span>
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359
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">compress<span class="idiff left">ion</span></span><span class="p"><span class="idiff">=</span></span><span class="s1" style="color: #d14;"><span class="idiff right">'zlib'</span></span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="p">={</span><span class="s1" style="color: #d14;">'axes'</span><span class="p">:</span> <span class="s1" style="color: #d14;">'TZCYX'</span><span class="p">})</span></span>
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377
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360
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<pre style="margin: 0;"> <span id="LC360" class="line" lang="mosel"> </span>
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378
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<td class="diff-line-num new_line" data-linenumber="361" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
361
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<pre style="margin: 0;"> <span id="LC361" class="line" lang="mosel"> <span class="n" style="color: #333;">Save</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">volume</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">xyz</span> <span class="n" style="color: #333;">voxel</span> <span class="n" style="color: #333;">size</span> <span class="m" style="color: #099;">2.6755</span><span class="n" style="color: #333;">x2</span><span class="m" style="color: #099;">.6755</span><span class="n" style="color: #333;">x3</span><span class="m" style="color: #099;">.9474</span> <span class="n" style="color: #333;">micron</span><span class="p">^</span><span class="m" style="color: #099;">3</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">ImageJ</span></span>
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379
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<pre style="margin: 0;"> <span id="LC362" class="line" lang="mosel"> <span class="n" style="color: #333;">formatted</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="449" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="432" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -449,12 +432,19 @@ Description: Read and write TIFF(r) files</td>
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449
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432
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<pre style="margin: 0;"> <span id="LC432" class="line" lang="mosel"> <span class="m" style="color: #099;">1.0</span></span>
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450
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433
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<pre style="margin: 0;"> <span id="LC433" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">del</span> <span class="n" style="color: #333;">memmap_image</span></span>
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451
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434
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<pre style="margin: 0;"> <span id="LC434" class="line" lang="mosel"> </span>
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452
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<td class="diff-line-num new_line old" data-linenumber="435" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC452" class="line" lang="mosel"> <span class="n" style="color: #333;">Successively</span> <span class="n" style="color: #333;">append</span> <span class="n" style="color: #333;">images</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">which</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">exceed</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">:</span></span>
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435
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<pre style="margin: 0;">+<span id="LC435" class="line" lang="mosel"> <span class="n" style="color: #333;">Successively</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">frames</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">one</span> <span class="n" style="color: #333;">contiguous</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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436
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="mosel"> </span>
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437
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">30</span><span class="p">,</span> <span class="m" style="color: #099;">301</span><span class="p">,</span> <span class="m" style="color: #099;">219</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
438
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<pre style="margin: 0;">+<span id="LC438" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="439" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
439
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">frame</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">data</span><span class="p">:</span></span>
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440
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">(</span><span class="n" style="color: #333;">frame</span><span class="p">,</span> <span class="n" style="color: #333;">contiguous</span><span class="p">=</span><span class="nb" style="color: #0086b3;">True</span><span class="p">)</span></span>
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441
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="mosel"> </span>
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442
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<pre style="margin: 0;">+<span id="LC442" class="line" lang="mosel"> <span class="n" style="color: #333;">Successively</span> <span class="n" style="color: #333;">append</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">which</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">exceed</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC443" class="line" lang="mosel"> </span>
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454
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<pre style="margin: 0;"> <span id="LC444" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">,</span> <span class="m" style="color: #099;">301</span><span class="p">,</span> <span class="m" style="color: #099;">219</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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455
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445
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<pre style="margin: 0;"> <span id="LC445" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">bigtiff</span><span class="p">=</span><span class="nb" style="color: #0086b3;">True</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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456
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446
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<pre style="margin: 0;"> <span id="LC446" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">i</span> <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">range</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]):</span></span>
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457
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<pre style="margin: 0;">-<span id="LC457" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;"><span class="idiff left">save</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data</span></span><span class="p"><span class="idiff">[</span></span><span class="n" style="color: #333;"><span class="idiff">i</span></span><span class="p"><span class="idiff">],</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">compress</span></span><span class="p"><span class="idiff">=</span></span><span class="m" style="color: #099;"><span class="idiff right">6</span></span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'minisblack'</span><span class="p">)</span></span>
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447
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<pre style="margin: 0;">+<span id="LC447" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;"><span class="idiff left">write</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data</span></span><span class="p"><span class="idiff">[</span></span><span class="n" style="color: #333;"><span class="idiff">i</span></span><span class="p"><span class="idiff right">]</span>,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'minisblack'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC448" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC449" class="line" lang="mosel"> <span class="n" style="color: #333;">Append</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">image</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">existing</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC450" class="line" lang="mosel"> </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="462" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -472,31 +462,18 @@ Description: Read and write TIFF(r) files</td>
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462
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<pre style="margin: 0;"> <span id="LC462" class="line" lang="mosel"> <span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">two</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">series</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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463
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<pre style="margin: 0;"> <span id="LC463" class="line" lang="mosel"> </span>
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464
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<pre style="margin: 0;"> <span id="LC464" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data0</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">32</span><span class="p">,</span> <span class="m" style="color: #099;">32</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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475
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<td class="diff-line-num new_line old" data-linenumber="465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC475" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data1</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">1023</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;"><span class="idiff left right">5</span></span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint16'</span><span class="p">)</span></span>
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476
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<pre style="margin: 0;">-<span id="LC476" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ome</span></span><span class="p"><span class="idiff">=</span></span><span class="nb" style="color: #0086b3;"><span class="idiff right">True</span></span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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477
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<pre style="margin: 0;">-<span id="LC477" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;"><span class="idiff left">save</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">compress</span></span><span class="p"><span class="idiff">=</span></span><span class="m" style="color: #099;"><span class="idiff right">6</span></span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'rgb'</span><span class="p">)</span></span>
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478
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<td class="diff-line-num new_line old" data-linenumber="465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC478" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;"><span class="idiff left">save</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data1</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">photometric</span></span><span class="p"><span class="idiff">=</span></span><span class="s1" style="color: #d14;"><span class="idiff">'minisblack'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">contiguous</span></span><span class="p"><span class="idiff">=</span></span><span class="nb" style="color: #0086b3;"><span class="idiff right">False</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC479" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">metadata</span><span class="p">=</span><span class="n" style="color: #333;"><span class="idiff left">dict</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">axes</span></span><span class="p"><span class="idiff">=</span></span><span class="s1" style="color: #d14;"><span class="idiff">'ZYX'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">SignificantBits</span></span><span class="p"><span class="idiff right">=</span></span><span class="m" style="color: #099;">10</span><span class="p">,</span></span>
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<td class="diff-line-num new_line old" data-linenumber="465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC480" class="line" lang="mosel"> <span class="p">...</span> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">PositionZ</span></span><span class="p"><span class="idiff">=[</span></span><span class="m" style="color: #099;"><span class="idiff">0.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">1.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">4.0</span></span><span class="p"><span class="idiff right">])</span>)</span></span>
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465
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data1</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">1023</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;"><span class="idiff left right">4</span></span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint16'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="466" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
466
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="467" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
467
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<pre style="margin: 0;">+<span id="LC467" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;"><span class="idiff left">write</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff right">data0</span></span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'rgb'</span><span class="p">)</span></span>
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468
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<pre style="margin: 0;">+<span id="LC468" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;"><span class="idiff left">write</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data1</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">photometric</span></span><span class="p"><span class="idiff">=</span></span><span class="s1" style="color: #d14;"><span class="idiff right">'minisblack'</span></span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="469" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
469
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">metadata</span><span class="p">=<span class="idiff left">{</span></span><span class="s1" style="color: #d14;"><span class="idiff">'axes'</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="s1" style="color: #d14;"><span class="idiff">'ZYX'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="s1" style="color: #d14;"><span class="idiff">'SignificantBits'</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff right"> </span><span class="m" style="color: #099;">10</span><span class="p">,</span></span>
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470
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="mosel"> <span class="p">...</span> <span class="s1" style="color: #d14;"><span class="idiff left">'Plane'</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="p"><span class="idiff">{</span></span><span class="s1" style="color: #d14;"><span class="idiff">'PositionZ'</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="p"><span class="idiff">[</span></span><span class="m" style="color: #099;"><span class="idiff">0.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">1.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.0</span></span><span class="p"><span class="idiff right">]}}</span>)</span></span>
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<pre style="margin: 0;"> <span id="LC471" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC472" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">second</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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483
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473
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<pre style="margin: 0;"> <span id="LC473" class="line" lang="mosel"> </span>
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484
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<pre style="margin: 0;"> <span id="LC474" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">series1</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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485
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475
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<pre style="margin: 0;"> <span id="LC475" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">series1</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">-<span id="LC486" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">)</span></span>
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487
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<pre style="margin: 0;">-<span id="LC487" class="line" lang="mosel"> </span>
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488
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<pre style="margin: 0;">-<span id="LC488" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">stack</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">name</span> <span class="n" style="color: #333;">pattern</span><span class="p">:</span></span>
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489
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<td class="diff-line-num new_line old" data-linenumber="476" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC489" class="line" lang="mosel"> </span>
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490
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<td class="diff-line-num new_line old" data-linenumber="476" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC490" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001T001.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC491" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001T002.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">))</span></span>
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492
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<pre style="margin: 0;">-<span id="LC492" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span> <span class="p">=</span> <span class="n" style="color: #333;">TiffSequence</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001*.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">pattern</span><span class="p">=</span><span class="s1" style="color: #d14;">'axes'</span><span class="p">)</span></span>
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493
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<pre style="margin: 0;">-<span id="LC493" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">-<span id="LC494" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">)</span></span>
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495
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<pre style="margin: 0;">-<span id="LC495" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">axes</span></span>
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496
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<pre style="margin: 0;">-<span id="LC496" class="line" lang="mosel"> <span class="s1" style="color: #d14;">'CT'</span></span>
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497
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<pre style="margin: 0;">-<span id="LC497" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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498
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<pre style="margin: 0;">-<span id="LC498" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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499
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<pre style="margin: 0;">-<span id="LC499" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">)</span></span>
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476
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<pre style="margin: 0;">+<span id="LC476" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC477" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC478" class="line" lang="mosel"> <span class="n" style="color: #333;">Create</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">generator</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span><span class="p">:</span></span>
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502
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479
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<pre style="margin: 0;"> <span id="LC479" class="line" lang="mosel"> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="505" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -505,38 +482,67 @@ Description: Read and write TIFF(r) files</td>
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505
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<td class="diff-line-num new_line" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
482
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<pre style="margin: 0;"> <span id="LC482" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">i</span> <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">range</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]):</span> <span class="n" style="color: #333;">yield</span> <span class="n" style="color: #333;">data</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span></span>
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506
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<td class="diff-line-num new_line" data-linenumber="483" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
483
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<pre style="margin: 0;"> <span id="LC483" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">tiles</span><span class="p">(),</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint16'</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">=(</span><span class="m" style="color: #099;">48</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">),</span> <span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">))</span></span>
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507
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484
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<pre style="margin: 0;"> <span id="LC484" class="line" lang="mosel"> </span>
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508
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<td class="diff-line-num new_line old" data-linenumber="485" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC508" class="line" lang="mosel"> <span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">resolution</span><span class="p">,</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">:</span></span>
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<td class="diff-line-num new old_line" data-linenumber="509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="485" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
485
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<pre style="margin: 0;">+<span id="LC485" class="line" lang="mosel"> <span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">resolution</span><span class="p">,</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">JPEG</span></span>
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<td class="diff-line-num new old_line" data-linenumber="509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="486" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
486
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="mosel"> <span class="n" style="color: #333;">compression</span><span class="p">.</span> <span class="n" style="color: #333;">Sub</span><span class="p">-</span><span class="n" style="color: #333;">resolution</span> <span class="n" style="color: #333;">images</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">written</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">SubIFDs</span><span class="p">:</span></span>
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509
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<td class="diff-line-num new_line" data-linenumber="487" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
487
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<pre style="margin: 0;"> <span id="LC487" class="line" lang="mosel"> </span>
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510
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<td class="diff-line-num new_line" data-linenumber="488" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
488
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<pre style="margin: 0;"> <span id="LC488" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="m" style="color: #099;">1024</span><span class="p">*</span><span class="m" style="color: #099;">1024</span><span class="p">*</span><span class="m" style="color: #099;">3</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint8'</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">((</span><span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">))</span></span>
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<td class="diff-line-num old old_line" data-linenumber="511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
511
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC511" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
512
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC512" class="line" lang="mosel"> <span class="p">...</span> <span class="k" style="font-weight: 600;">options</span> <span class="p">=</span> <span class="n" style="color: #333;">dict</span><span class="p">(</span><span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="n" style="color: #333;">compress</span><span class="p">=</span><span class="s1" style="color: #d14;">'jpeg'</span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="p">=</span><span class="n" style="color: #333;">None</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
513
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC513" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="514" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
514
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC514" class="line" lang="mosel"> <span class="p">...</span> <span class="p">#</span> <span class="n" style="color: #333;">save</span> <span class="n" style="color: #333;">pyramid</span> <span class="n" style="color: #333;">levels</span><span class="p">.</span> <span class="k" style="font-weight: 600;">In</span> <span class="n" style="color: #333;">production</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">resampling</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">generate</span> <span class="n" style="color: #333;">levels</span><span class="c1" style="color: #998; font-style: italic;">!</span></span>
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515
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC515" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
516
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC516" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">4</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="517" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
517
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC517" class="line" lang="mosel"> </span>
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<td class="diff-line-num old old_line" data-linenumber="518" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
518
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC518" class="line" lang="mosel"> <span class="n" style="color: #333;">Access</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">levels</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="519" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
519
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC519" class="line" lang="mosel"> </span>
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<td class="diff-line-num old old_line" data-linenumber="520" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
520
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC520" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
521
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC521" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">level</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
522
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC522" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new old_line" data-linenumber="523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
489
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new old_line" data-linenumber="523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="490" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
490
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="mosel"> <span class="p">...</span> <span class="k" style="font-weight: 600;">options</span> <span class="p">=</span> <span class="n" style="color: #333;">dict</span><span class="p">(</span><span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="n" style="color: #333;">compression</span><span class="p">=</span><span class="s1" style="color: #d14;">'jpeg'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="491" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
491
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">subifds</span><span class="p">=</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="492" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
492
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<pre style="margin: 0;">+<span id="LC492" class="line" lang="mosel"> <span class="p">...</span> <span class="p">#</span> <span class="n" style="color: #333;">save</span> <span class="n" style="color: #333;">pyramid</span> <span class="n" style="color: #333;">levels</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">two</span> <span class="n" style="color: #333;">subifds</span></span>
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493
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<pre style="margin: 0;">+<span id="LC493" class="line" lang="mosel"> <span class="p">...</span> <span class="p">#</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">production</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">resampling</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">generate</span> <span class="n" style="color: #333;">sub</span><span class="p">-</span><span class="n" style="color: #333;">resolutions</span><span class="c1" style="color: #998; font-style: italic;">!</span></span>
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494
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<pre style="margin: 0;">+<span id="LC494" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="495" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
495
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<pre style="margin: 0;">+<span id="LC495" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">4</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="496" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
496
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<pre style="margin: 0;">+<span id="LC496" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="497" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
497
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<pre style="margin: 0;">+<span id="LC497" class="line" lang="mosel"> <span class="n" style="color: #333;">Access</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">levels</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="498" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
498
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<pre style="margin: 0;">+<span id="LC498" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="499" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
499
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<pre style="margin: 0;">+<span id="LC499" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="500" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
500
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<pre style="margin: 0;">+<span id="LC500" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">level</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="501" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
501
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<pre style="margin: 0;">+<span id="LC501" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num old_line" data-linenumber="523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
523
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502
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<pre style="margin: 0;"> <span id="LC502" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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524
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<td class="diff-line-num new_line" data-linenumber="503" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
503
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<pre style="margin: 0;"> <span id="LC503" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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525
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504
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<pre style="margin: 0;"> <span id="LC504" class="line" lang="mosel"> </span>
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526
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<td class="diff-line-num new_line" data-linenumber="505" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
505
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<pre style="margin: 0;"> <span id="LC505" class="line" lang="mosel"> <span class="n" style="color: #333;">Iterate</span> <span class="n" style="color: #333;">over</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decode</span> <span class="n" style="color: #333;">single</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">tiles</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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527
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506
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<pre style="margin: 0;"> <span id="LC506" class="line" lang="mosel"> </span>
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<td class="diff-line-num old old_line" data-linenumber="528" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
528
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<td class="diff-line-num new_line old" data-linenumber="507" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC528" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new old_line" data-linenumber="529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="507" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
507
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<pre style="margin: 0;">+<span id="LC507" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.<span class="idiff left right">ome.</span>tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num old_line" data-linenumber="529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
529
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<td class="diff-line-num new_line" data-linenumber="508" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
508
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<pre style="margin: 0;"> <span id="LC508" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">fh</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">filehandle</span></span>
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<td class="diff-line-num old_line" data-linenumber="530" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
530
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<td class="diff-line-num new_line" data-linenumber="509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
509
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<pre style="margin: 0;"> <span id="LC509" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">page</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
531
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<td class="diff-line-num new_line old" data-linenumber="510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC531" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">jpegtables</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s1" style="color: #d14;">'JPEGTables'</span><span class="p">,</span> <span class="n" style="color: #333;">None</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC532" class="line" lang="mosel"> <span class="p">...</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">jpegtables</span> <span class="n" style="color: #333;">is</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">None</span><span class="p">:</span></span>
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533
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<pre style="margin: 0;">-<span id="LC533" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">jpegtables</span> <span class="p">=</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">.</span><span class="n" style="color: #333;">value</span></span>
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534
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510
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<pre style="margin: 0;"> <span id="LC510" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">offset</span><span class="p">,</span> <span class="n" style="color: #333;">bytecount</span><span class="p">)</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">enumerate</span><span class="p">(</span></span>
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535
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511
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<pre style="margin: 0;"> <span id="LC511" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">zip</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">dataoffsets</span><span class="p">,</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">databytecounts</span><span class="p">)</span></span>
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536
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512
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<pre style="margin: 0;"> <span id="LC512" class="line" lang="mosel"> <span class="p">...</span> <span class="p">):</span></span>
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537
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513
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<pre style="margin: 0;"> <span id="LC513" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">seek</span><span class="p">(</span><span class="n" style="color: #333;">offset</span><span class="p">)</span></span>
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538
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514
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<pre style="margin: 0;"> <span id="LC514" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="nb" style="color: #0086b3;">read</span><span class="p">(</span><span class="n" style="color: #333;">bytecount</span><span class="p">)</span></span>
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539
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<pre style="margin: 0;">-<span id="LC539" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tile</span><span class="p">,</span> <span class="n" style="color: #333;">indices</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">decode</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">)</span></span>
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515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tile</span><span class="p">,</span> <span class="n" style="color: #333;">indices</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">decode</span><span class="p">(</span></span>
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516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">=</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">jpegtables</span></span>
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517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="mosel"> <span class="p">...</span> <span class="p">)</span></span>
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518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="mosel"> </span>
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519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">zarr</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">access</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">images</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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520
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
521
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">import</span> <span class="n" style="color: #333;">zarr</span></span>
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<td class="diff-line-num new new_line" data-linenumber="522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
522
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">store</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">aszarr</span><span class="p">=</span><span class="nb" style="color: #0086b3;">True</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
523
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">z</span> <span class="p">=</span> <span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">open</span><span class="p">(</span><span class="n" style="color: #333;">store</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">=</span><span class="s1" style="color: #d14;">'r'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
524
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">z</span></span>
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525
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="mosel"> <span class="p"><</span><span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">hierarchy</span><span class="p">.</span><span class="n" style="color: #333;">Group</span> <span class="s1" style="color: #d14;">'/'</span> <span class="nb" style="color: #0086b3;">read</span><span class="p">-</span><span class="n" style="color: #333;">only</span><span class="p">></span></span>
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526
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">z</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span> <span class="p">#</span> <span class="n" style="color: #333;">base</span> <span class="n" style="color: #333;">layer</span></span>
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="mosel"> <span class="p"><</span><span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">core</span><span class="p">.</span><span class="k" style="font-weight: 600;">Array</span> <span class="s1" style="color: #d14;">'/0'</span> <span class="p">(</span><span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">)</span> <span class="n" style="color: #333;">uint8</span> <span class="nb" style="color: #0086b3;">read</span><span class="p">-</span><span class="n" style="color: #333;">only</span><span class="p">></span></span>
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">store</span><span class="p">.</span><span class="n" style="color: #333;">close</span><span class="p">()</span></span>
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529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">stack</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">name</span> <span class="n" style="color: #333;">pattern</span><span class="p">:</span></span>
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531
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="mosel"> </span>
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532
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001T001.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">))</span></span>
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533
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001T002.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">))</span></span>
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534
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span> <span class="p">=</span> <span class="n" style="color: #333;">TiffSequence</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001*.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">pattern</span><span class="p">=</span><span class="s1" style="color: #d14;">'axes'</span><span class="p">)</span></span>
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535
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">)</span></span>
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537
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<pre style="margin: 0;">+<span id="LC537" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">axes</span></span>
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="mosel"> <span class="s1" style="color: #d14;">'CT'</span></span>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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540
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<td class="diff-line-num new new_line" data-linenumber="541" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
541
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<pre style="margin: 0;">+<span id="LC541" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">)</span></span>
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542
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<pre style="margin: 0;">+<span id="LC542" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">aszarr</span><span class="p">()</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">store</span><span class="p">:</span></span>
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543
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<pre style="margin: 0;">+<span id="LC543" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">open</span><span class="p">(</span><span class="n" style="color: #333;">store</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">=</span><span class="s1" style="color: #d14;">'r'</span><span class="p">)</span></span>
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544
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<pre style="margin: 0;">+<span id="LC544" class="line" lang="mosel"> <span class="p"><</span><span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">core</span><span class="p">.</span><span class="k" style="font-weight: 600;">Array</span> <span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">)</span> <span class="n" style="color: #333;">float64</span> <span class="nb" style="color: #0086b3;">read</span><span class="p">-</span><span class="n" style="color: #333;">only</span><span class="p">></span></span>
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<td class="diff-line-num new new_line" data-linenumber="545" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
545
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<pre style="margin: 0;">+<span id="LC545" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">close</span><span class="p">()</span></span>
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540
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546
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<pre style="margin: 0;"> <span id="LC546" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC547" class="line" lang="mosel"><span class="n" style="color: #333;">Platform</span><span class="p">:</span> <span class="n" style="color: #333;">any</span></span>
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<pre style="margin: 0;"> <span id="LC548" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Development</span> <span class="n" style="color: #333;">Status</span> <span class="p">::</span> <span class="m" style="color: #099;">4</span> <span class="p">-</span> <span class="n" style="color: #333;">Beta</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -548,5 +554,5 @@ Classifier: Programming Language :: Python :: 3 :: Only</td>
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554
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<pre style="margin: 0;"> <span id="LC554" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3.7</span></span>
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549
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555
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<pre style="margin: 0;"> <span id="LC555" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3.8</span></span>
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550
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556
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<pre style="margin: 0;"> <span id="LC556" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3.9</span></span>
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551
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<pre style="margin: 0;">-<span id="LC551" class="line" lang="mosel"><span class="n" style="color: #333;">Requires</span><span class="p">-</span><span class="n" style="color: #333;">Python</span><span class="p">:</span> <span class="p">>=</span><span class="m" style="color: #099;">3.<span class="idiff left right">6</span></span></span>
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557
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<pre style="margin: 0;">+<span id="LC557" class="line" lang="mosel"><span class="n" style="color: #333;">Requires</span><span class="p">-</span><span class="n" style="color: #333;">Python</span><span class="p">:</span> <span class="p">>=</span><span class="m" style="color: #099;">3.<span class="idiff left right">7</span></span></span>
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552
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558
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<pre style="margin: 0;"> <span id="LC558" class="line" lang="mosel"><span class="n" style="color: #333;">Provides</span><span class="p">-</span><span class="n" style="color: #333;">Extra</span><span class="p">:</span> <span class="n" style="color: #333;">all</span></span></pre>
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<a href="https://salsa.debian.org/python-team/packages/tifffile/-/compare/5bea9ad9f9caeb54e479da614a97feac4110e3ab...1e2cb7a486032b83d3201fbcd054a84b89f31772#561b88e19de321ca62c7590bbb350765fb110905"><strong>README.rst</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,23 +10,25 @@ Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, STK, LSM, SGI,</td>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"><span class="n" style="color: #333;">NIHImage</span><span class="p">,</span> <span class="n" style="color: #333;">ImageJ</span><span class="p">,</span> <span class="n" style="color: #333;">MicroManager</span><span class="p">,</span> <span class="n" style="color: #333;">FluoView</span><span class="p">,</span> <span class="n" style="color: #333;">ScanImage</span><span class="p">,</span> <span class="n" style="color: #333;">SEQ</span><span class="p">,</span> <span class="n" style="color: #333;">GEL</span><span class="p">,</span> <span class="n" style="color: #333;">SVS</span><span class="p">,</span> <span class="n" style="color: #333;">SCN</span><span class="p">,</span> <span class="n" style="color: #333;">SIS</span><span class="p">,</span></span>
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11
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="mosel"><span class="n" style="color: #333;">ZIF</span> <span class="p">(</span><span class="n" style="color: #333;">Zoomable</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">),</span> <span class="n" style="color: #333;">QPTIFF</span> <span class="p">(</span><span class="n" style="color: #333;">QPI</span><span class="p">),</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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12
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="mosel"><span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">data</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="nb" style="color: #0086b3;">read</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">zarr</span> <span class="n" style="color: #333;">arrays</span><span class="p">/</span><span class="n" style="color: #333;">groups</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">strips</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="mosel"><span class="n" style="color: #333;">tiles</span><span class="p">,</span> <span class="n" style="color: #333;">pages</span> <span class="p">(</span><span class="n" style="color: #333;">IFDs</span><span class="p">),</span> <span class="n" style="color: #333;">SubIFDs</span><span class="p">,</span> <span class="n" style="color: #333;">higher</span> <span class="n" style="color: #333;">order</span> <span class="n" style="color: #333;">series</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">levels</span><span class="p">.</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="mosel"></span>
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13
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="mosel"><span class="n" style="color: #333;">Numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">written</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">BigTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">hyperstack</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="mosel"><span class="n" style="color: #333;">compatible</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">memory</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">mappable</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">tiled</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">predicted</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff right">or</span></span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="mosel"><span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">form</span><span class="p">.</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="mosel"><span class="n" style="color: #333;">compatible</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">volumetric</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">pyramidal</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">memory</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">mappable</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">tiled</span></span><span class="p"><span class="idiff right">,</span></span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="mosel"><span class="n" style="color: #333;"><span class="idiff left">predicted</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">or</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">form</span><span class="p">.</span></span>
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16
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="mosel"></span>
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17
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<td class="diff-line-num new_line old" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="mosel"><span class="n" style="color: #333;">A</span> <span class="n" style="color: #333;">subset</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">specification</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">supported</span><span class="p">,</span> <span class="n" style="color: #333;">mainly</span> <span class="n" style="color: #333;">uncompressed</span> <span class="k" style="font-weight: 600;">and</span></span>
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18
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<td class="diff-line-num new_line old" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="mosel"><span class="n" style="color: #333;">losslessly</span> <span class="n" style="color: #333;">compressed</span> <span class="m" style="color: #099;">8</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="k" style="font-weight: 600;">integer</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">float</span><span class="p">,</span></span>
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19
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<td class="diff-line-num new_line old" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="mosel"><span class="n" style="color: #333;">grayscale</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">sample</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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20
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<td class="diff-line-num new_line old" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="mosel"><span class="n" style="color: #333;">Specifically</span><span class="p">,</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">slices</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">CCITT</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">OJPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">,</span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="mosel"><span class="n" style="color: #333;">chroma</span> <span class="n" style="color: #333;">subsampling</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">,</span> <span class="n" style="color: #333;">color</span> <span class="n" style="color: #333;">space</span> <span class="n" style="color: #333;">transformations</span><span class="p">,</span></span>
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22
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<td class="diff-line-num new_line old" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="mosel"><span class="n" style="color: #333;">samples</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">differing</span> <span class="n" style="color: #333;">types</span><span class="p">,</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">IPTC</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">XMP</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">implemented</span><span class="p">.</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="mosel"><span class="n" style="color: #333;">A</span> <span class="n" style="color: #333;">subset</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">specification</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">supported</span><span class="p">,</span> <span class="n" style="color: #333;">mainly</span> <span class="m" style="color: #099;">8</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="mosel"><span class="k" style="font-weight: 600;">integer</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">float</span><span class="p">,</span> <span class="n" style="color: #333;">grayscale</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">sample</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="mosel"><span class="n" style="color: #333;">Specifically</span><span class="p">,</span> <span class="n" style="color: #333;">CCITT</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">OJPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">,</span> <span class="n" style="color: #333;">chroma</span> <span class="n" style="color: #333;">subsampling</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">JPEG</span></span>
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<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="mosel"><span class="n" style="color: #333;">compression</span><span class="p">,</span> <span class="n" style="color: #333;">color</span> <span class="n" style="color: #333;">space</span> <span class="n" style="color: #333;">transformations</span><span class="p">,</span> <span class="n" style="color: #333;">samples</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">differing</span> <span class="n" style="color: #333;">types</span><span class="p">,</span> <span class="k" style="font-weight: 600;">or</span></span>
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<td class="diff-line-num new new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="mosel"><span class="n" style="color: #333;">IPTC</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">XMP</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">implemented</span><span class="p">.</span></span>
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23
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="mosel"></span>
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24
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="mosel"><span class="n" style="color: #333;">TIFF</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">),</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">Tagged</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">,</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">trademark</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">under</span> <span class="n" style="color: #333;">control</span> <span class="k" style="font-weight: 600;">of</span></span>
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25
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="mosel"><span class="n" style="color: #333;">Adobe</span> <span class="n" style="color: #333;">Systems</span> <span class="n" style="color: #333;">Incorporated</span><span class="p">.</span> <span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">allows</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">larger</span> <span class="n" style="color: #333;">than</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="mosel"><span class="n" style="color: #333;">STK</span><span class="p">,</span> <span class="n" style="color: #333;">LSM</span><span class="p">,</span> <span class="n" style="color: #333;">FluoView</span><span class="p">,</span> <span class="n" style="color: #333;">SGI</span><span class="p">,</span> <span class="n" style="color: #333;">SEQ</span><span class="p">,</span> <span class="n" style="color: #333;">GEL</span><span class="p">,</span> <span class="n" style="color: #333;">QPTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">custom</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="mosel"><span class="n" style="color: #333;">STK</span><span class="p">,</span> <span class="n" style="color: #333;">LSM</span><span class="p">,</span> <span class="n" style="color: #333;">FluoView</span><span class="p">,</span> <span class="n" style="color: #333;">SGI</span><span class="p">,</span> <span class="n" style="color: #333;">SEQ</span><span class="p">,</span> <span class="n" style="color: #333;">GEL</span><span class="p">,</span> <span class="n" style="color: #333;">QPTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">SCN</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">custom</span></span>
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27
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="mosel"><span class="n" style="color: #333;">extensions</span> <span class="n" style="color: #333;">defined</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Devices</span> <span class="p">(</span><span class="n" style="color: #333;">Universal</span> <span class="n" style="color: #333;">Imaging</span> <span class="n" style="color: #333;">Corporation</span><span class="p">),</span></span>
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28
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="mosel"><span class="n" style="color: #333;">Carl</span> <span class="n" style="color: #333;">Zeiss</span> <span class="n" style="color: #333;">MicroImaging</span><span class="p">,</span> <span class="n" style="color: #333;">Olympus</span><span class="p">,</span> <span class="n" style="color: #333;">Silicon</span> <span class="n" style="color: #333;">Graphics</span> <span class="n" style="color: #333;">International</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="mosel"><span class="n" style="color: #333;">Media</span> <span class="n" style="color: #333;">Cybernetics</span><span class="p">,</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Dynamics</span><span class="p">,</span> <span class="n" style="color: #333;">PerkinElmer</span><span class="p">,</span> <span class="n" style="color: #333;">Hamamatsu</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">the</span></span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="mosel"><span class="n" style="color: #333;">Media</span> <span class="n" style="color: #333;">Cybernetics</span><span class="p">,</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Dynamics</span><span class="p">,</span> <span class="n" style="color: #333;">PerkinElmer</span><span class="p">,</span> <span class="n" style="color: #333;">Hamamatsu</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">Leica</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">the</span></span>
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30
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="mosel"><span class="n" style="color: #333;">Open</span> <span class="n" style="color: #333;">Microscopy</span> <span class="n" style="color: #333;">Environment</span> <span class="n" style="color: #333;">consortium</span><span class="p">,</span> <span class="n" style="color: #333;">respectively</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="mosel"><span class="n" style="color: #333;">For</span> <span class="nf" style="color: #900; font-weight: 600;">command</span> <span class="n" style="color: #333;">line</span> <span class="n" style="color: #333;">usage</span> <span class="nf" style="color: #900; font-weight: 600;">run</span> <span class="p">``</span><span class="n" style="color: #333;">python</span> <span class="p">-</span><span class="n" style="color: #333;">m</span> <span class="n" style="color: #333;">tifffile</span> <span class="p">--</span><span class="n" style="color: #333;">help</span><span class="p">``</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,26 +41,91 @@ For command line usage run ``python -m tifffile --help``</td>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="mosel"><span class="p">:</span><span class="n" style="color: #333;">License</span><span class="p">:</span> <span class="n" style="color: #333;">BSD</span> <span class="m" style="color: #099;">3</span><span class="p">-</span><span class="n" style="color: #333;">Clause</span></span>
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41
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43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="mosel"><span class="p">:</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">7.17</span></span></span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="mosel"><span class="p">:</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">11.18</span></span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="mosel"></span>
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46
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="mosel"><span class="k" style="font-weight: 600;">Requirements</span></span>
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45
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47
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="mosel"><span class="p">------------</span></span>
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48
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="mosel"><span class="n" style="color: #333;">This</span> <span class="n" style="color: #333;">release</span> <span class="n" style="color: #333;">has</span> <span class="n" style="color: #333;">been</span> <span class="n" style="color: #333;">tested</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">following</span> <span class="k" style="font-weight: 600;">requirements</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">dependencies</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="mosel"><span class="p">(</span><span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">may</span> <span class="n" style="color: #333;">work</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">CPython</span> <span class="m" style="color: #099;">3.7.<span class="idiff left">8</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.8.4</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.9.0</span></span><span class="n" style="color: #333;"><span class="idiff right">b4</span></span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">python</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Numpy</span> <span class="m" style="color: #099;">1.1<span class="idiff left right">8.5</span></span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">numpy</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">CPython</span> <span class="m" style="color: #099;">3.7.<span class="idiff left">9</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.8.6</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">3.9.0</span></span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">python</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Numpy</span> <span class="m" style="color: #099;">1.1<span class="idiff left right">9.4</span></span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">numpy</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Imagecodecs</span> <span class="m" style="color: #099;">2020.5.30</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">imagecodecs</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="n" style="color: #333;">etc</span><span class="p">.)</span></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Matplotlib</span> <span class="m" style="color: #099;">3.<span class="idiff left right">2.2</span></span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">matplotlib</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Matplotlib</span> <span class="m" style="color: #099;">3.<span class="idiff left right">3.3</span></span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">matplotlib</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">plotting</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Lxml</span> <span class="m" style="color: #099;">4.<span class="idiff left">5.2</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">github</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">com</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">lxml</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff right">lxml</span></span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Lxml</span> <span class="m" style="color: #099;">4.<span class="idiff left">6.1</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">pypi</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">project</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">lxml</span></span><span class="p"><span class="idiff right">/</span>>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">validating</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">printing</span> <span class="n" style="color: #333;">XML</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Zarr</span> <span class="m" style="color: #099;">2.5.0</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">zarr</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">opening</span> <span class="n" style="color: #333;">zarr</span> <span class="n" style="color: #333;">storage</span><span class="p">)</span></span>
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61
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="mosel"></span>
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58
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62
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="mosel"><span class="n" style="color: #333;">Revisions</span></span>
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59
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<td class="diff-line-num new_line" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
63
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="mosel"><span class="p">---------</span></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="mosel"><span class="m" style="color: #099;">2020.11.18</span></span>
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<td class="diff-line-num new new_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="m" style="color: #099;">4363</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="mosel"> <span class="n" style="color: #333;">Support</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">SEPARATED</span> <span class="n" style="color: #333;">colorspace</span> <span class="p">(#</span><span class="m" style="color: #099;">37</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">.</span><span class="n" style="color: #333;">deflate</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">available</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">SCN</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">NDPI</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">Z</span> <span class="n" style="color: #333;">dimensions</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">TiffReader</span> <span class="n" style="color: #333;">alias</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="mosel"> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">is_volumetric</span> <span class="n" style="color: #333;">returns</span> <span class="nb" style="color: #0086b3;">True</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ImageDepth</span> <span class="p">></span> <span class="m" style="color: #099;">1.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="mosel"> <span class="n" style="color: #333;">Zarr</span> <span class="n" style="color: #333;">store</span> <span class="n" style="color: #333;">getitem</span> <span class="n" style="color: #333;">returns</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="n" style="color: #333;">instead</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">bytes</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="mosel"><span class="m" style="color: #099;">2020.10.1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="mosel"> <span class="n" style="color: #333;">Formally</span> <span class="n" style="color: #333;">deprecate</span> <span class="n" style="color: #333;">unused</span> <span class="n" style="color: #333;">TiffFile</span> <span class="k" style="font-weight: 600;">parameters</span> <span class="p">(</span><span class="n" style="color: #333;">scikit</span><span class="p">-</span><span class="n" style="color: #333;">image</span> <span class="p">#</span><span class="m" style="color: #099;">4996</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="mosel"><span class="m" style="color: #099;">2020.9.30</span></span>
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<td class="diff-line-num new new_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">pass</span> <span class="n" style="color: #333;">additional</span> <span class="n" style="color: #333;">arguments</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">compression</span> <span class="n" style="color: #333;">codecs</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="mosel"> <span class="n" style="color: #333;">Deprecate</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="n" style="color: #333;">save</span> <span class="k" style="font-weight: 600;">function</span> <span class="p">(</span><span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="mosel"> <span class="n" style="color: #333;">Deprecate</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="n" style="color: #333;">save</span> <span class="n" style="color: #333;">compress</span> <span class="n" style="color: #333;">parameter</span> <span class="p">(</span><span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">compression</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">multifile</span> <span class="n" style="color: #333;">parameter</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">TiffFile</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="n" style="color: #333;">all</span> <span class="n" style="color: #333;">is_flag</span> <span class="n" style="color: #333;">arguments</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">imread</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">byte</span><span class="p">-</span><span class="n" style="color: #333;">swap</span> <span class="n" style="color: #333;">JPEG2000</span><span class="p">,</span> <span class="n" style="color: #333;">WEBP</span><span class="p">,</span> <span class="n" style="color: #333;">PNG</span><span class="p">,</span> <span class="n" style="color: #333;">JPEGXR</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">decode</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="mosel"><span class="m" style="color: #099;">2020.9.29</span></span>
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<td class="diff-line-num new new_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">produced</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">ScanImage</span> <span class="p">></span> <span class="m" style="color: #099;">2015</span> <span class="p">(#</span><span class="m" style="color: #099;">29</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="mosel"><span class="m" style="color: #099;">2020.9.28</span></span>
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<td class="diff-line-num new new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="mosel"> <span class="n" style="color: #333;">Derive</span> <span class="n" style="color: #333;">ZarrStore</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">MutableMapping</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="mosel"> <span class="n" style="color: #333;">Support</span> <span class="n" style="color: #333;">zero</span> <span class="n" style="color: #333;">shape</span> <span class="n" style="color: #333;">ZarrTiffStore</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">ZarrFileStore</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">ZarrFileStore</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">missing</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="mosel"> <span class="n" style="color: #333;">Cache</span> <span class="n" style="color: #333;">one</span> <span class="n" style="color: #333;">chunk</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">ZarrFileStore</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="mosel"> <span class="n" style="color: #333;">Keep</span> <span class="n" style="color: #333;">track</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">already</span> <span class="n" style="color: #333;">opened</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">FileCache</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="mosel"> <span class="n" style="color: #333;">Change</span> <span class="n" style="color: #333;">parse_filenames</span> <span class="k" style="font-weight: 600;">function</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">return</span> <span class="n" style="color: #333;">zero</span><span class="p">-</span><span class="n" style="color: #333;">based</span> <span class="n" style="color: #333;">indices</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">reopen</span> <span class="n" style="color: #333;">parameter</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">asarray</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">FileSequence</span><span class="p">.</span><span class="n" style="color: #333;">fromfile</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">imread</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="mosel"><span class="m" style="color: #099;">2020.9.22</span></span>
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<td class="diff-line-num new new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">experimental</span> <span class="n" style="color: #333;">zarr</span> <span class="n" style="color: #333;">storage</span> <span class="n" style="color: #333;">interface</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">unused</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">dimension</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">shaped</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="mosel"> <span class="n" style="color: #333;">Move</span> <span class="n" style="color: #333;">reading</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">STK</span> <span class="n" style="color: #333;">planes</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">series</span> <span class="n" style="color: #333;">interface</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="mosel"> <span class="n" style="color: #333;">Always</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">virtual</span> <span class="n" style="color: #333;">frames</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">ScanImage</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">DimensionOrder</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">determine</span> <span class="n" style="color: #333;">axes</span> <span class="n" style="color: #333;">order</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">OmeXml</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="mosel"> <span class="n" style="color: #333;">Enable</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">striped</span> <span class="n" style="color: #333;">volumetric</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
</pre>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="mosel"> <span class="n" style="color: #333;">Keep</span> <span class="n" style="color: #333;">complete</span> <span class="n" style="color: #333;">dataoffsets</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">databytecounts</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TiffFrames</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">full</span> <span class="n" style="color: #333;">size</span> <span class="n" style="color: #333;">tiles</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">Tiffpage</span><span class="p">.</span><span class="n" style="color: #333;">segments</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">is_sgi</span> <span class="n" style="color: #333;">property</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">is_volumetric</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">TiffPageSeries</span><span class="p">.</span><span class="n" style="color: #333;">is_pyramid</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">is_pyramidal</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">TypeError</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">passing</span> <span class="n" style="color: #333;">jpegtables</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">decode</span> <span class="k" style="font-weight: 600;">function</span> <span class="p">(#</span><span class="m" style="color: #099;">25</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="mosel"><span class="m" style="color: #099;">2020.9.3</span></span>
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<td class="diff-line-num new new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">contiguous</span> <span class="n" style="color: #333;">series</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">default</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">SubIFDs</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">F</span><span class="p">-</span><span class="n" style="color: #333;">contiguous</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="p">(#</span><span class="m" style="color: #099;">24</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="mosel"><span class="m" style="color: #099;">2020.8.25</span></span>
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<td class="diff-line-num new new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">convert</span> <span class="n" style="color: #333;">EPICS</span> <span class="n" style="color: #333;">timeStamp</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">datetime</span> <span class="n" style="color: #333;">object</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">incompletely</span> <span class="n" style="color: #333;">written</span> <span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">stack</span> <span class="n" style="color: #333;">header</span> <span class="p">(#</span><span class="m" style="color: #099;">23</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">tag</span> <span class="m" style="color: #099;">51123</span> <span class="n" style="color: #333;">values</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span><span class="n" style="color: #333;">micromanager_metadata</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="mosel"><span class="m" style="color: #099;">2020.8.13</span></span>
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<td class="diff-line-num new new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">tifffile</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">over</span> <span class="n" style="color: #333;">OME</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span><span class="n" style="color: #333;">series</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">iterable</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">pages</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">compression</span> <span class="p">(#</span><span class="m" style="color: #099;">20</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="mosel"> <span class="n" style="color: #333;">Expand</span> <span class="n" style="color: #333;">error</span> <span class="n" style="color: #333;">checking</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TiffWriter</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tile</span> <span class="n" style="color: #333;">arguments</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="mosel"><span class="m" style="color: #099;">2020.7.24</span></span>
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<td class="diff-line-num new new_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="mosel"> <span class="n" style="color: #333;">Parse</span> <span class="n" style="color: #333;">nested</span> <span class="n" style="color: #333;">OmeXml</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">argument</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">lazy</span> <span class="nf" style="color: #900; font-weight: 600;">load</span> <span class="n" style="color: #333;">TiffFrame</span> <span class="n" style="color: #333;">JPEGTables</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">conditionally</span> <span class="n" style="color: #333;">skipping</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="mosel"><span class="m" style="color: #099;">2020.7.22</span></span>
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<td class="diff-line-num new new_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">auto</span><span class="p">-</span><span class="n" style="color: #333;">enable</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">description</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">passed</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="mosel"> <span class="n" style="color: #333;">Raise</span> <span class="n" style="color: #333;">error</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">empty</span> <span class="n" style="color: #333;">bilevel</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">bilevel</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">iterable</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">single</span> <span class="n" style="color: #333;">page</span> <span class="n" style="color: #333;">images</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="k" style="font-weight: 600;">function</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">validate</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="mosel"> <span class="n" style="color: #333;">Correct</span> <span class="n" style="color: #333;">Philips</span> <span class="n" style="color: #333;">slide</span> <span class="n" style="color: #333;">width</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">length</span><span class="p">.</span></span>
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60
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128
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="mosel"><span class="m" style="color: #099;">2020.7.17</span></span>
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61
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="m" style="color: #099;">3022</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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62
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<td class="diff-line-num new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="mosel"> <span class="n" style="color: #333;">Initial</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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63
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<td class="diff-line-num new_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">samples</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">dimension</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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64
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<td class="diff-line-num new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">modulo</span> <span class="n" style="color: #333;">dimensions</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">multiple</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -94,7 +161,7 @@ Revisions</td>
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94
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">single</span> <span class="n" style="color: #333;">tiles</span> <span class="n" style="color: #333;">larger</span> <span class="n" style="color: #333;">than</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">data</span> <span class="p">(#</span><span class="m" style="color: #099;">3</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
95
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<td class="diff-line-num new_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="mosel"> <span class="n" style="color: #333;">Always</span> <span class="n" style="color: #333;">store</span> <span class="n" style="color: #333;">ExtraSamples</span> <span class="n" style="color: #333;">values</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tuple</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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96
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<td class="diff-line-num new_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="mosel"><span class="m" style="color: #099;">2020.5.5</span></span>
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<td class="diff-line-num old old_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
97
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<td class="diff-line-num new_line old" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">itera<span class="idiff left right">tor</span></span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">itera<span class="idiff left right">ble</span></span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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98
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<td class="diff-line-num new_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="k" style="font-weight: 600;">function</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">iterate</span> <span class="n" style="color: #333;">over</span> <span class="n" style="color: #333;">decoded</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TiffPage</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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99
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<td class="diff-line-num new_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="n" style="color: #333;">chunks</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">ThreadPoolExecutor</span><span class="p">.</span><span class="n" style="color: #333;">map</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">reduce</span> <span class="n" style="color: #333;">memory</span> <span class="n" style="color: #333;">usage</span><span class="p">.</span></span>
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100
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<td class="diff-line-num new_line" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
167
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">invalid</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">too</span> <span class="n" style="color: #333;">many</span> <span class="n" style="color: #333;">strips</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -124,102 +191,6 @@ Revisions</td>
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<td class="diff-line-num old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
124
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<td class="diff-line-num new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
191
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">deprecated</span> <span class="n" style="color: #333;">lzw_decode</span> <span class="n" style="color: #333;">functions</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
125
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<td class="diff-line-num new_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
192
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">2.7</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">3.5</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
126
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<td class="diff-line-num new_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
193
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="mosel"><span class="m" style="color: #099;">2019.7.26</span></span>
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<td class="diff-line-num old old_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
127
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">infinite</span> <span class="n" style="color: #333;">loop</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">more</span> <span class="n" style="color: #333;">than</span> <span class="n" style="color: #333;">two</span> <span class="n" style="color: #333;">tags</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">same</span> <span class="n" style="color: #333;">code</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">IFD</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
128
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="mosel"> <span class="n" style="color: #333;">Delay</span> <span class="n" style="color: #333;">import</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">logging</span> <span class="n" style="color: #333;">module</span><span class="p">.</span></span>
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129
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="mosel"><span class="m" style="color: #099;">2019.7.20</span></span>
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<td class="diff-line-num old old_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
130
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span> <span class="n" style="color: #333;">detection</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">created</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">Imaris</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
131
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">replace</span> <span class="nb" style="color: #0086b3;">assert</span> <span class="n" style="color: #333;">statements</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
132
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="mosel"><span class="m" style="color: #099;">2019.7.2</span></span>
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<td class="diff-line-num old old_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
133
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">SampleFormat</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">unsigned</span> <span class="n" style="color: #333;">data</span> <span class="n" style="color: #333;">types</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
134
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="mosel"> <span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">ByteCount</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">values</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">SHORT</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">LONG</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">possible</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
135
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">specify</span> <span class="n" style="color: #333;">axes</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">FileSequence</span> <span class="n" style="color: #333;">pattern</span> <span class="n" style="color: #333;">via</span> <span class="n" style="color: #333;">group</span> <span class="n" style="color: #333;">names</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
136
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">option</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">concurrently</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">FileSequence</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">threads</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
137
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="mosel"> <span class="n" style="color: #333;">Derive</span> <span class="n" style="color: #333;">TiffSequence</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">FileSequence</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
138
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">str</span><span class="p">(</span><span class="n" style="color: #333;">datetime</span><span class="p">.</span><span class="n" style="color: #333;">timedelta</span><span class="p">)</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">format</span> <span class="n" style="color: #333;">Timer</span> <span class="n" style="color: #333;">duration</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
139
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">perf_counter</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Timer</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">possible</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
140
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="mosel"><span class="m" style="color: #099;">2019.6.18</span></span>
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<td class="diff-line-num old old_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
141
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">planar</span> <span class="n" style="color: #333;">RGB</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">created</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">Bio</span><span class="p">-</span><span class="n" style="color: #333;">Formats</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
142
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">UUID</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
143
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="mosel"> <span class="n" style="color: #333;">Presume</span> <span class="n" style="color: #333;">LSM</span> <span class="n" style="color: #333;">stores</span> <span class="n" style="color: #333;">uncompressed</span> <span class="n" style="color: #333;">images</span> <span class="n" style="color: #333;">contiguously</span> <span class="n" style="color: #333;">per</span> <span class="n" style="color: #333;">page</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
144
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="mosel"> <span class="n" style="color: #333;">Reformat</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">complex</span> <span class="n" style="color: #333;">expressions</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
145
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="mosel"><span class="m" style="color: #099;">2019.5.30</span></span>
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<td class="diff-line-num old old_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
146
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="mosel"> <span class="n" style="color: #333;">Ignore</span> <span class="n" style="color: #333;">invalid</span> <span class="n" style="color: #333;">frames</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
147
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Set</span> <span class="n" style="color: #333;">default</span> <span class="n" style="color: #333;">subsampling</span> <span class="k" style="font-weight: 600;">to</span> <span class="p">(</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">)</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">RGB</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
148
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">planar</span> <span class="n" style="color: #333;">RGB</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
149
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="mosel"> <span class="n" style="color: #333;">Replace</span> <span class="n" style="color: #333;">buffered_read</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">FileHandle</span><span class="p">.</span><span class="n" style="color: #333;">read_segments</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
150
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Include</span> <span class="n" style="color: #333;">page</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">frame</span> <span class="n" style="color: #333;">numbers</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">exceptions</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">warnings</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
151
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">Timer</span> <span class="n" style="color: #333;">class</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
152
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="mosel"><span class="m" style="color: #099;">2019.5.22</span></span>
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<td class="diff-line-num old old_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
153
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">optional</span> <span class="n" style="color: #333;">chroma</span> <span class="n" style="color: #333;">subsampling</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
154
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="mosel"> <span class="n" style="color: #333;">Enable</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">PNG</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="n" style="color: #333;">JPEGXR</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">JPEG2K</span> <span class="n" style="color: #333;">compression</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
155
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">images</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">WebP</span> <span class="n" style="color: #333;">compression</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
156
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="mosel"> <span class="n" style="color: #333;">Improve</span> <span class="n" style="color: #333;">handling</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">sparse</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
157
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="mosel"><span class="m" style="color: #099;">2019.3.18</span></span>
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<td class="diff-line-num old old_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
158
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">regression</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">JPEG</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">RGB</span> <span class="n" style="color: #333;">photometrics</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
159
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">corrupted</span> <span class="n" style="color: #333;">but</span> <span class="n" style="color: #333;">unused</span> <span class="n" style="color: #333;">pages</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
160
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nf" style="color: #900; font-weight: 600;">load</span> <span class="n" style="color: #333;">TiffFrame</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">specifying</span> <span class="n" style="color: #333;">keyframe</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
161
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="mosel"> <span class="n" style="color: #333;">Calculate</span> <span class="n" style="color: #333;">virtual</span> <span class="n" style="color: #333;">TiffFrames</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">ScanImage</span> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">2</span><span class="n" style="color: #333;">GB</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
162
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">property</span> <span class="n" style="color: #333;">is_chroma_subsampled</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">is_subsampled</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
163
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="mosel"> <span class="n" style="color: #333;">Make</span> <span class="n" style="color: #333;">more</span> <span class="n" style="color: #333;">attributes</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">methods</span> <span class="n" style="color: #333;">private</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
164
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="mosel"><span class="m" style="color: #099;">2019.3.8</span></span>
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<td class="diff-line-num old old_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
165
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">MemoryError</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">RowsPerStrip</span> <span class="p">></span> <span class="n" style="color: #333;">ImageLength</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
166
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">SyntaxWarning</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">3.8</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
167
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="mosel"> <span class="n" style="color: #333;">Fail</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">decode</span> <span class="n" style="color: #333;">JPEG</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">planar</span> <span class="n" style="color: #333;">RGB</span> <span class="p">(</span><span class="n" style="color: #333;">tentative</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
168
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="mosel"> <span class="n" style="color: #333;">Separate</span> <span class="k" style="font-weight: 600;">public</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">private</span> <span class="n" style="color: #333;">test</span> <span class="n" style="color: #333;">files</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
169
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="n" style="color: #333;">testing</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">data</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
170
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="mosel"><span class="m" style="color: #099;">2019.2.22</span></span>
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<td class="diff-line-num old old_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
171
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">-</span><span class="n" style="color: #333;">lite</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">fallback</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
172
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="mosel"> <span class="n" style="color: #333;">Simplify</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">file</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
173
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">TiffFrames</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">arrays</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">page</span> <span class="n" style="color: #333;">sequences</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
174
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="mosel"> <span class="n" style="color: #333;">Support</span> <span class="n" style="color: #333;">slices</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">iterators</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">TiffPageSeries</span> <span class="n" style="color: #333;">sequence</span> <span class="n" style="color: #333;">interface</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
175
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="mosel"> <span class="n" style="color: #333;">Auto</span><span class="p">-</span><span class="n" style="color: #333;">detect</span> <span class="n" style="color: #333;">uniform</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
176
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">page</span> <span class="n" style="color: #333;">hash</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">determine</span> <span class="n" style="color: #333;">generic</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
177
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="mosel"> <span class="n" style="color: #333;">Turn</span> <span class="n" style="color: #333;">off</span> <span class="n" style="color: #333;">TiffPages</span> <span class="n" style="color: #333;">cache</span> <span class="p">(</span><span class="n" style="color: #333;">tentative</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
178
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="n" style="color: #333;">through</span> <span class="n" style="color: #333;">more</span> <span class="k" style="font-weight: 600;">parameters</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imread</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
179
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="mosel"> <span class="n" style="color: #333;">Discontinue</span> <span class="n" style="color: #333;">movie</span> <span class="n" style="color: #333;">parameter</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imread</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">TiffFile</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
180
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC180" class="line" lang="mosel"> <span class="n" style="color: #333;">Discontinue</span> <span class="n" style="color: #333;">bigsize</span> <span class="n" style="color: #333;">parameter</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imwrite</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
181
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="mosel"> <span class="n" style="color: #333;">Raise</span> <span class="n" style="color: #333;">TiffFileError</span> <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">case</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">issues</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">structure</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
182
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span><span class="n" style="color: #333;">ome_metadata</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">XML</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
183
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="mosel"> <span class="n" style="color: #333;">Ignore</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">last</span> <span class="n" style="color: #333;">dimensions</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">stored</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">pages</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
184
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="mosel"><span class="m" style="color: #099;">2019.2.10</span></span>
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<td class="diff-line-num old old_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
185
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="mosel"> <span class="n" style="color: #333;">Assemble</span> <span class="n" style="color: #333;">IFDs</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">memory</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">speed</span><span class="p">-</span><span class="n" style="color: #333;">up</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">slow</span> <span class="n" style="color: #333;">media</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
186
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="mosel"> <span class="n" style="color: #333;">Handle</span> <span class="n" style="color: #333;">discontinued</span> <span class="n" style="color: #333;">arguments</span> <span class="n" style="color: #333;">fastij</span><span class="p">,</span> <span class="n" style="color: #333;">multifile_close</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">pages</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
187
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="mosel"><span class="m" style="color: #099;">2019.1.30</span></span>
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<td class="diff-line-num old old_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
188
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">black</span> <span class="n" style="color: #333;">background</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imshow</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
189
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">datetime</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">default</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
190
</td>
<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">SamplesPerPixel</span> <span class="p">></span> <span class="m" style="color: #099;">1.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
191
</td>
<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">IFD</span> <span class="n" style="color: #333;">offsets</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">NDPI</span> <span class="p">(</span><span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">4</span><span class="n" style="color: #333;">GB</span> <span class="n" style="color: #333;">still</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">supported</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
192
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="mosel"><span class="m" style="color: #099;">2019.1.4</span></span>
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<td class="diff-line-num old old_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
193
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">deflate</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
194
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="mosel"><span class="m" style="color: #099;">2019.1.1</span></span>
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<td class="diff-line-num old old_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
195
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="mosel"> <span class="n" style="color: #333;">Update</span> <span class="n" style="color: #333;">copyright</span> <span class="n" style="color: #333;">year</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
196
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="mosel"> <span class="n" style="color: #333;">Require</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="p">>=</span> <span class="m" style="color: #099;">2018.12.16</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
197
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">tables</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">keyframe</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
198
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="mosel"> <span class="n" style="color: #333;">Enable</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">large</span> <span class="n" style="color: #333;">JPEG</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">NDPI</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
199
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="mosel"> <span class="n" style="color: #333;">Decode</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">old</span><span class="p">-</span><span class="n" style="color: #333;">style</span> <span class="n" style="color: #333;">JPEG</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
200
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="mosel"> <span class="n" style="color: #333;">Reorder</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">channel</span> <span class="n" style="color: #333;">axis</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">match</span> <span class="n" style="color: #333;">PlanarConfiguration</span> <span class="n" style="color: #333;">storage</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
201
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC201" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">images</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">contiguous</span> <span class="n" style="color: #333;">arrays</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
202
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">decode_lzw</span> <span class="n" style="color: #333;">proxy</span> <span class="k" style="font-weight: 600;">function</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">compatibility</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">old</span> <span class="n" style="color: #333;">czifile</span> <span class="n" style="color: #333;">module</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
203
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">dedicated</span> <span class="n" style="color: #333;">logger</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
204
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="mosel"><span class="m" style="color: #099;">2018.11.28</span></span>
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<td class="diff-line-num old old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
205
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="mosel"> <span class="n" style="color: #333;">Make</span> <span class="n" style="color: #333;">SubIFDs</span> <span class="n" style="color: #333;">accessible</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
206
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="mosel"> <span class="n" style="color: #333;">Make</span> <span class="n" style="color: #333;">parsing</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TiffSequence</span> <span class="n" style="color: #333;">axes</span> <span class="n" style="color: #333;">pattern</span> <span class="n" style="color: #333;">optional</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
207
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="mosel"> <span class="n" style="color: #333;">Limit</span> <span class="n" style="color: #333;">parsing</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TiffSequence</span> <span class="n" style="color: #333;">axes</span> <span class="n" style="color: #333;">pattern</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">names</span><span class="p">,</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">path</span> <span class="n" style="color: #333;">names</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
208
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">interpolate</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imshow</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">dimensions</span> <span class="p"><=</span> <span class="m" style="color: #099;">512</span><span class="p">,</span> <span class="k" style="font-weight: 600;">else</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">bilinear</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
209
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">logging</span><span class="p">.</span><span class="n" style="color: #333;">warning</span> <span class="n" style="color: #333;">instead</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">warnings</span><span class="p">.</span><span class="n" style="color: #333;">warn</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">many</span> <span class="n" style="color: #333;">cases</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
210
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">FutureWarning</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">out</span> <span class="p">==</span> <span class="s1" style="color: #d14;">'memmap'</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
211
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="mosel"> <span class="n" style="color: #333;">Adjust</span> <span class="n" style="color: #333;">ZSTD</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">WebP</span> <span class="n" style="color: #333;">compression</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">libtiff</span><span class="p">-</span><span class="m" style="color: #099;">4.0.10</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
212
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="mosel"> <span class="n" style="color: #333;">Decode</span> <span class="n" style="color: #333;">old</span><span class="p">-</span><span class="n" style="color: #333;">style</span> <span class="n" style="color: #333;">LZW</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="p">>=</span> <span class="m" style="color: #099;">2018.11.8</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
213
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<td class="diff-line-num new_line old" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC213" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span><span class="n" style="color: #333;">qptiff_metadata</span> <span class="p">(</span><span class="n" style="color: #333;">QPI</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">per</span> <span class="n" style="color: #333;">page</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
214
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">keyword</span> <span class="n" style="color: #333;">arguments</span> <span class="n" style="color: #333;">before</span> <span class="n" style="color: #333;">variable</span> <span class="n" style="color: #333;">positional</span> <span class="n" style="color: #333;">arguments</span><span class="p">.</span></span>
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215
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<pre style="margin: 0;">-<span id="LC215" class="line" lang="mosel"> <span class="n" style="color: #333;">Make</span> <span class="n" style="color: #333;">either</span> <span class="n" style="color: #333;">all</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">none</span> <span class="n" style="color: #333;">return</span> <span class="n" style="color: #333;">statements</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">a</span> <span class="k" style="font-weight: 600;">function</span> <span class="n" style="color: #333;">return</span> <span class="n" style="color: #333;">expression</span><span class="p">.</span></span>
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216
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">pytest</span> <span class="n" style="color: #333;">parametrize</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">generate</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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217
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<pre style="margin: 0;">-<span id="LC217" class="line" lang="mosel"> <span class="n" style="color: #333;">Replace</span> <span class="n" style="color: #333;">test</span> <span class="n" style="color: #333;">classes</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">functions</span><span class="p">.</span></span>
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218
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="mosel"><span class="m" style="color: #099;">2018.11.6</span></span>
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219
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">imsave</span> <span class="k" style="font-weight: 600;">function</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">imwrite</span><span class="p">.</span></span>
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220
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="mosel"> <span class="n" style="color: #333;">Readd</span> <span class="n" style="color: #333;">Python</span> <span class="n" style="color: #333;">implementations</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">packints</span><span class="p">,</span> <span class="n" style="color: #333;">delta</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">bitorder</span> <span class="n" style="color: #333;">codecs</span><span class="p">.</span></span>
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221
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">TiffFrame</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="n" style="color: #333;">AttributeError</span><span class="p">.</span></span>
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<pre style="margin: 0;">-<span id="LC222" class="line" lang="mosel"><span class="m" style="color: #099;">2018.10.18</span></span>
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194
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="mosel"> <span class="p">...</span></span>
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195
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="mosel"><span class="n" style="color: #333;">Refer</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">CHANGES</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">older</span> <span class="n" style="color: #333;">revisions</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -230,7 +201,7 @@ The API is not stable yet and might change between revisions.</td>
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="mosel"></span>
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202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="mosel"><span class="n" style="color: #333;">Tested</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">little</span><span class="p">-</span><span class="n" style="color: #333;">endian</span> <span class="n" style="color: #333;">platforms</span> <span class="n" style="color: #333;">only</span><span class="p">.</span></span>
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232
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203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="mosel"></span>
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233
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="mosel"><span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">deprecated</span><span class="p">.</span> <span class="n" style="color: #333;">Python</span> <span class="p"><=</span> <span class="m" style="color: #099;">3.<span class="idiff left right">6</span></span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">no</span> <span class="n" style="color: #333;">longer</span> <span class="n" style="color: #333;">supported</span><span class="p">.</span></span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="mosel"><span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">deprecated</span><span class="p">.</span> <span class="n" style="color: #333;">Python</span> <span class="p"><=</span> <span class="m" style="color: #099;">3.<span class="idiff left right">7</span></span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">no</span> <span class="n" style="color: #333;">longer</span> <span class="n" style="color: #333;">supported</span><span class="p">.</span></span>
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234
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205
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="mosel"><span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">relies</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">the</span> <span class="p">`</span><span class="n" style="color: #333;">imagecodecs</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">imagecodecs</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="mosel"><span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">image</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -252,17 +223,24 @@ some of which allow file or data sizes to exceed the 4 GB limit:</td>
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252
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223
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="mosel"> <span class="n" style="color: #333;">tag</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">IFD</span> <span class="n" style="color: #333;">defines</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">position</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">IFDs</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">high</span></span>
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253
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<td class="diff-line-num new_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
224
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="mosel"> <span class="n" style="color: #333;">dimensional</span> <span class="n" style="color: #333;">data</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">,</span> <span class="n" style="color: #333;">except</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span></span>
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<td class="diff-line-num old_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
254
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<td class="diff-line-num new_line" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
225
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="mosel"> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">stored</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">file</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span></span>
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<td class="diff-line-num old old_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
255
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<td class="diff-line-num new_line old" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC255" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">non</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">pyramidal</span></span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span></span>
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<td class="diff-line-num new old_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
226
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
256
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<td class="diff-line-num new_line" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
227
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="mosel"><span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">LSM</span><span class="p">*</span> <span class="n" style="color: #333;">stores</span> <span class="n" style="color: #333;">all</span> <span class="n" style="color: #333;">IFDs</span> <span class="n" style="color: #333;">below</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="n" style="color: #333;">but</span> <span class="n" style="color: #333;">wraps</span> <span class="n" style="color: #333;">around</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">StripOffsets</span><span class="p">.</span></span>
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257
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<td class="diff-line-num new_line" data-linenumber="228" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
228
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="mosel"> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">StripOffsets</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">each</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">position</span> <span class="n" style="color: #333;">require</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">unwrapping</span><span class="p">.</span></span>
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258
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<td class="diff-line-num new_line" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
229
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="mosel"> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">StripByteCounts</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">contains</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">number</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">bytes</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">uncompressed</span></span>
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<td class="diff-line-num old_line" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
259
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230
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="mosel"> <span class="n" style="color: #333;">data</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">large</span> <span class="n" style="color: #333;">LSM</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num new old_line" data-linenumber="260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
231
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="mosel"><span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">STK</span><span class="p">*</span> <span class="p">(</span><span class="n" style="color: #333;">MetaMorph</span> <span class="n" style="color: #333;">Stack</span><span class="p">)</span> <span class="n" style="color: #333;">contains</span> <span class="n" style="color: #333;">additional</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">planes</span> <span class="n" style="color: #333;">stored</span> <span class="n" style="color: #333;">contiguously</span></span>
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<td class="diff-line-num new old_line" data-linenumber="260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="232" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
232
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="mosel"> <span class="n" style="color: #333;">after</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">data</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">page</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">total</span> <span class="n" style="color: #333;">number</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">planes</span></span>
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<td class="diff-line-num new new_line" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
233
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="mosel"> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">equal</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">counts</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">UIC2tag</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">STK</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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260
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<td class="diff-line-num new_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
234
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="mosel"><span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">NDPI</span><span class="p">*</span> <span class="k" style="font-weight: 600;">uses</span> <span class="n" style="color: #333;">some</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">header</span><span class="p">,</span> <span class="n" style="color: #333;">IFD</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">structures</span><span class="p">.</span></span>
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261
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<td class="diff-line-num new_line" data-linenumber="235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
235
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="mosel"> <span class="n" style="color: #333;">Tag</span> <span class="n" style="color: #333;">values</span><span class="p">/</span><span class="n" style="color: #333;">offsets</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">corrected</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">high</span> <span class="n" style="color: #333;">bits</span> <span class="n" style="color: #333;">stored</span> <span class="n" style="color: #333;">after</span> <span class="n" style="color: #333;">IFD</span></span>
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262
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<td class="diff-line-num new_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
236
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="mosel"> <span class="n" style="color: #333;">structures</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span><span class="m" style="color: #099;">65536</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">missing</span></span>
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263
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<td class="diff-line-num new_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
237
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="mosel"> <span class="n" style="color: #333;">restart</span> <span class="n" style="color: #333;">markers</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">readable</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">libjpeg</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">NDPI</span></span>
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264
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<td class="diff-line-num new_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="mosel"> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">restart</span> <span class="n" style="color: #333;">markers</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span><span class="m" style="color: #099;">65536</span> <span class="n" style="color: #333;">can</span></span>
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265
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<td class="diff-line-num new_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
239
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="mosel"> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">decoded</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="n" style="color: #333;">library</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">Windows</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
240
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="mosel"><span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">Philips</span><span class="p">*</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">slides</span> <span class="n" style="color: #333;">store</span> <span class="n" style="color: #333;">wrong</span> <span class="n" style="color: #333;">ImageWidth</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageLength</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">values</span> <span class="n" style="color: #333;">for</span></span>
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<td class="diff-line-num new new_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
241
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="mosel"> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">pages</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">values</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">corrected</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">DICOM_PIXEL_SPACING</span></span>
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<td class="diff-line-num new new_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
242
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="mosel"> <span class="n" style="color: #333;">attributes</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">XML</span> <span class="n" style="color: #333;">formatted</span> <span class="n" style="color: #333;">description</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">page</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span></span>
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<td class="diff-line-num new new_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="mosel"> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">Philips</span> <span class="n" style="color: #333;">slides</span><span class="p">.</span></span>
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266
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<td class="diff-line-num new_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="mosel"><span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">ScanImage</span><span class="p">*</span> <span class="n" style="color: #333;">optionally</span> <span class="n" style="color: #333;">allows</span> <span class="n" style="color: #333;">corrupt</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">2</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">values</span></span>
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267
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<td class="diff-line-num new_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
245
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">StripOffsets</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">StripByteCounts</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">recovered</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">constant</span></span>
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268
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246
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="mosel"> <span class="n" style="color: #333;">differences</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">IFD</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">values</span> <span class="n" style="color: #333;">throughout</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">file</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -289,6 +267,7 @@ Other libraries for reading scientific TIFF files from Python:</td>
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289
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267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">ScanImageTiffReaderPython</span></span>
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290
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<td class="diff-line-num new_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
268
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="mosel"> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">gitlab</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">vidriotech</span><span class="p">/</span><span class="n" style="color: #333;">scanimagetiffreader</span><span class="p">-</span><span class="n" style="color: #333;">python</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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291
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<td class="diff-line-num new_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
269
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">bigtiff</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">bigtiff</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<td class="diff-line-num new new_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Large</span> <span class="n" style="color: #333;">Image</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">girder</span><span class="p">/</span><span class="n" style="color: #333;">large_image</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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292
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<td class="diff-line-num new_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
271
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="mosel"></span>
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<td class="diff-line-num old_line" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
293
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<td class="diff-line-num new_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
272
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="mosel"><span class="n" style="color: #333;">Some</span> <span class="n" style="color: #333;">libraries</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">tifffile</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">:</span></span>
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273
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="mosel"></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -298,6 +277,10 @@ Some libraries are using tifffile to write OME-TIFF files:</td>
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298
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<td class="diff-line-num new_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
277
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="mosel"> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">aicsimageio</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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299
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278
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">xtiff</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">BodenmillerGroup</span><span class="p">/</span><span class="n" style="color: #333;">xtiff</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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300
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<td class="diff-line-num new_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
279
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="mosel"><span class="n" style="color: #333;">Other</span> <span class="n" style="color: #333;">tools</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">inspecting</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">manipulating</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="mosel"><span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">tifftools</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">DigitalSlideArchive</span><span class="p">/</span><span class="n" style="color: #333;">tifftools</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="mosel"></span>
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301
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284
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="mosel"><span class="n" style="color: #333;">References</span></span>
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<td class="diff-line-num old_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
302
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<td class="diff-line-num new_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
285
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="mosel"><span class="p">----------</span></span>
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303
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<td class="diff-line-num new_line" data-linenumber="286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
286
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="mosel"><span class="p">*</span> <span class="n" style="color: #333;">TIFF</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">Specification</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Supplements</span><span class="p">.</span> <span class="n" style="color: #333;">Adobe</span> <span class="n" style="color: #333;">Systems</span> <span class="n" style="color: #333;">Incorporated</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="363" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -363,7 +346,7 @@ Save a numpy array to a single-page RGB TIFF file:</td>
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363
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<td class="diff-line-num new_line" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
346
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<pre style="margin: 0;"> <span id="LC346" class="line" lang="mosel"><span class="n" style="color: #333;">Save</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">floating</span><span class="p">-</span><span class="n" style="color: #333;">point</span> <span class="k" style="font-weight: 600;">array</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">metadata</span><span class="p">,</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">zlib</span> <span class="n" style="color: #333;">compression</span><span class="p">:</span></span>
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364
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347
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<pre style="margin: 0;"> <span id="LC347" class="line" lang="mosel"></span>
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365
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<td class="diff-line-num new_line" data-linenumber="348" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
348
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<pre style="margin: 0;"> <span id="LC348" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">,</span> <span class="m" style="color: #099;">301</span><span class="p">,</span> <span class="m" style="color: #099;">219</span><span class="p">).</span><span class="n" style="color: #333;">astype</span><span class="p">(</span><span class="s1" style="color: #d14;">'float32'</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="366" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
366
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<td class="diff-line-num new_line old" data-linenumber="349" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC366" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">compress</span><span class="p"><span class="idiff left">=</span></span><span class="m" style="color: #099;"><span class="idiff right">6</span></span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="p">={</span><span class="s1" style="color: #d14;">'axes'</span><span class="p">:</span> <span class="s1" style="color: #d14;">'TZCYX'</span><span class="p">})</span></span>
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<td class="diff-line-num new new_line" data-linenumber="349" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
349
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">compress<span class="idiff left">ion</span></span><span class="p"><span class="idiff">=</span></span><span class="s1" style="color: #d14;"><span class="idiff right">'zlib'</span></span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="p">={</span><span class="s1" style="color: #d14;">'axes'</span><span class="p">:</span> <span class="s1" style="color: #d14;">'TZCYX'</span><span class="p">})</span></span>
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367
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<td class="diff-line-num new_line" data-linenumber="350" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
350
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<pre style="margin: 0;"> <span id="LC350" class="line" lang="mosel"></span>
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368
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<td class="diff-line-num new_line" data-linenumber="351" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
351
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<pre style="margin: 0;"> <span id="LC351" class="line" lang="mosel"><span class="n" style="color: #333;">Save</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">volume</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">xyz</span> <span class="n" style="color: #333;">voxel</span> <span class="n" style="color: #333;">size</span> <span class="m" style="color: #099;">2.6755</span><span class="n" style="color: #333;">x2</span><span class="m" style="color: #099;">.6755</span><span class="n" style="color: #333;">x3</span><span class="m" style="color: #099;">.9474</span> <span class="n" style="color: #333;">micron</span><span class="p">^</span><span class="m" style="color: #099;">3</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">ImageJ</span></span>
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369
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<pre style="margin: 0;"> <span id="LC352" class="line" lang="mosel"><span class="n" style="color: #333;">formatted</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -439,12 +422,19 @@ Memory-map image data of the first page in the TIFF file:</td>
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<pre style="margin: 0;"> <span id="LC422" class="line" lang="mosel"><span class="m" style="color: #099;">1.0</span></span>
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<pre style="margin: 0;"> <span id="LC423" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">del</span> <span class="n" style="color: #333;">memmap_image</span></span>
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424
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<pre style="margin: 0;"> <span id="LC424" class="line" lang="mosel"></span>
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442
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<td class="diff-line-num new_line old" data-linenumber="425" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC442" class="line" lang="mosel"><span class="n" style="color: #333;">Successively</span> <span class="n" style="color: #333;">append</span> <span class="n" style="color: #333;">images</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">which</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">exceed</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">:</span></span>
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425
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<pre style="margin: 0;">+<span id="LC425" class="line" lang="mosel"><span class="n" style="color: #333;">Successively</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">frames</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">one</span> <span class="n" style="color: #333;">contiguous</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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426
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<pre style="margin: 0;">+<span id="LC426" class="line" lang="mosel"></span>
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427
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<pre style="margin: 0;">+<span id="LC427" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">30</span><span class="p">,</span> <span class="m" style="color: #099;">301</span><span class="p">,</span> <span class="m" style="color: #099;">219</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="428" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
428
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<pre style="margin: 0;">+<span id="LC428" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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429
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<pre style="margin: 0;">+<span id="LC429" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">frame</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">data</span><span class="p">:</span></span>
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430
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<pre style="margin: 0;">+<span id="LC430" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">(</span><span class="n" style="color: #333;">frame</span><span class="p">,</span> <span class="n" style="color: #333;">contiguous</span><span class="p">=</span><span class="nb" style="color: #0086b3;">True</span><span class="p">)</span></span>
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431
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<pre style="margin: 0;">+<span id="LC431" class="line" lang="mosel"></span>
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432
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="mosel"><span class="n" style="color: #333;">Successively</span> <span class="n" style="color: #333;">append</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">which</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">exceed</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">:</span></span>
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443
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433
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<pre style="margin: 0;"> <span id="LC433" class="line" lang="mosel"></span>
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444
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434
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<pre style="margin: 0;"> <span id="LC434" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">,</span> <span class="m" style="color: #099;">301</span><span class="p">,</span> <span class="m" style="color: #099;">219</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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445
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<td class="diff-line-num new_line" data-linenumber="435" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
435
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<pre style="margin: 0;"> <span id="LC435" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">bigtiff</span><span class="p">=</span><span class="nb" style="color: #0086b3;">True</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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446
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436
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<pre style="margin: 0;"> <span id="LC436" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">i</span> <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">range</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]):</span></span>
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447
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<pre style="margin: 0;">-<span id="LC447" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;"><span class="idiff left">save</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data</span></span><span class="p"><span class="idiff">[</span></span><span class="n" style="color: #333;"><span class="idiff">i</span></span><span class="p"><span class="idiff">],</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">compress</span></span><span class="p"><span class="idiff">=</span></span><span class="m" style="color: #099;"><span class="idiff right">6</span></span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'minisblack'</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;"><span class="idiff left">write</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data</span></span><span class="p"><span class="idiff">[</span></span><span class="n" style="color: #333;"><span class="idiff">i</span></span><span class="p"><span class="idiff right">]</span>,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'minisblack'</span><span class="p">)</span></span>
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448
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438
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<pre style="margin: 0;"> <span id="LC438" class="line" lang="mosel"></span>
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449
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<pre style="margin: 0;"> <span id="LC439" class="line" lang="mosel"><span class="n" style="color: #333;">Append</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">image</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">existing</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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450
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440
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<pre style="margin: 0;"> <span id="LC440" class="line" lang="mosel"></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="452" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -462,31 +452,18 @@ Iterate over pages and tags in the TIFF file and successively read images:</td>
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462
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452
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<pre style="margin: 0;"> <span id="LC452" class="line" lang="mosel"><span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">two</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">series</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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463
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453
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<pre style="margin: 0;"> <span id="LC453" class="line" lang="mosel"></span>
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464
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<pre style="margin: 0;"> <span id="LC454" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data0</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">32</span><span class="p">,</span> <span class="m" style="color: #099;">32</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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465
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<pre style="margin: 0;">-<span id="LC465" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data1</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">1023</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;"><span class="idiff left right">5</span></span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint16'</span><span class="p">)</span></span>
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466
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<pre style="margin: 0;">-<span id="LC466" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ome</span></span><span class="p"><span class="idiff">=</span></span><span class="nb" style="color: #0086b3;"><span class="idiff right">True</span></span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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467
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<pre style="margin: 0;">-<span id="LC467" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;"><span class="idiff left">save</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">compress</span></span><span class="p"><span class="idiff">=</span></span><span class="m" style="color: #099;"><span class="idiff right">6</span></span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'rgb'</span><span class="p">)</span></span>
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468
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<td class="diff-line-num new_line old" data-linenumber="455" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC468" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;"><span class="idiff left">save</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data1</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">photometric</span></span><span class="p"><span class="idiff">=</span></span><span class="s1" style="color: #d14;"><span class="idiff">'minisblack'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">contiguous</span></span><span class="p"><span class="idiff">=</span></span><span class="nb" style="color: #0086b3;"><span class="idiff right">False</span></span><span class="p">,</span></span>
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469
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<td class="diff-line-num new_line old" data-linenumber="455" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC469" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">metadata</span><span class="p">=</span><span class="n" style="color: #333;"><span class="idiff left">dict</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">axes</span></span><span class="p"><span class="idiff">=</span></span><span class="s1" style="color: #d14;"><span class="idiff">'ZYX'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">SignificantBits</span></span><span class="p"><span class="idiff right">=</span></span><span class="m" style="color: #099;">10</span><span class="p">,</span></span>
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470
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<pre style="margin: 0;">-<span id="LC470" class="line" lang="mosel"><span class="p">...</span> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">PositionZ</span></span><span class="p"><span class="idiff">=[</span></span><span class="m" style="color: #099;"><span class="idiff">0.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">1.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">4.0</span></span><span class="p"><span class="idiff right">])</span>)</span></span>
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<pre style="margin: 0;">+<span id="LC455" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data1</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">1023</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;"><span class="idiff left right">4</span></span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint16'</span><span class="p">)</span></span>
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456
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<pre style="margin: 0;">+<span id="LC456" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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457
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<pre style="margin: 0;">+<span id="LC457" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;"><span class="idiff left">write</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff right">data0</span></span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'rgb'</span><span class="p">)</span></span>
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458
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<pre style="margin: 0;">+<span id="LC458" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;"><span class="idiff left">write</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data1</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">photometric</span></span><span class="p"><span class="idiff">=</span></span><span class="s1" style="color: #d14;"><span class="idiff right">'minisblack'</span></span><span class="p">,</span></span>
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459
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<pre style="margin: 0;">+<span id="LC459" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">metadata</span><span class="p">=<span class="idiff left">{</span></span><span class="s1" style="color: #d14;"><span class="idiff">'axes'</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="s1" style="color: #d14;"><span class="idiff">'ZYX'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="s1" style="color: #d14;"><span class="idiff">'SignificantBits'</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff right"> </span><span class="m" style="color: #099;">10</span><span class="p">,</span></span>
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460
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<pre style="margin: 0;">+<span id="LC460" class="line" lang="mosel"><span class="p">...</span> <span class="s1" style="color: #d14;"><span class="idiff left">'Plane'</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="p"><span class="idiff">{</span></span><span class="s1" style="color: #d14;"><span class="idiff">'PositionZ'</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="p"><span class="idiff">[</span></span><span class="m" style="color: #099;"><span class="idiff">0.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">1.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.0</span></span><span class="p"><span class="idiff right">]}}</span>)</span></span>
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461
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<pre style="margin: 0;"> <span id="LC461" class="line" lang="mosel"></span>
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462
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<pre style="margin: 0;"> <span id="LC462" class="line" lang="mosel"><span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">second</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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473
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463
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<pre style="margin: 0;"> <span id="LC463" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC464" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">series1</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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475
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465
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<pre style="margin: 0;"> <span id="LC465" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">series1</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">-<span id="LC476" class="line" lang="mosel"><span class="p">(</span><span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">)</span></span>
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477
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<pre style="margin: 0;">-<span id="LC477" class="line" lang="mosel"></span>
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478
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<pre style="margin: 0;">-<span id="LC478" class="line" lang="mosel"><span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">stack</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">name</span> <span class="n" style="color: #333;">pattern</span><span class="p">:</span></span>
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479
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<pre style="margin: 0;">-<span id="LC479" class="line" lang="mosel"></span>
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480
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<pre style="margin: 0;">-<span id="LC480" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001T001.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">))</span></span>
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481
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<td class="diff-line-num new_line old" data-linenumber="466" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC481" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001T002.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">))</span></span>
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482
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<pre style="margin: 0;">-<span id="LC482" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span> <span class="p">=</span> <span class="n" style="color: #333;">TiffSequence</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001*.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">pattern</span><span class="p">=</span><span class="s1" style="color: #d14;">'axes'</span><span class="p">)</span></span>
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483
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<pre style="margin: 0;">-<span id="LC483" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">-<span id="LC484" class="line" lang="mosel"><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC485" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">axes</span></span>
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<pre style="margin: 0;">-<span id="LC486" class="line" lang="mosel"><span class="s1" style="color: #d14;">'CT'</span></span>
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<pre style="margin: 0;">-<span id="LC487" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC488" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">-<span id="LC489" class="line" lang="mosel"><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="mosel"><span class="p">(</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC467" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC468" class="line" lang="mosel"><span class="n" style="color: #333;">Create</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">generator</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC469" class="line" lang="mosel"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="495" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="472" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -495,35 +472,64 @@ Create a TIFF file from a generator of tiles:</td>
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495
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472
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<pre style="margin: 0;"> <span id="LC472" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">i</span> <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">range</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]):</span> <span class="n" style="color: #333;">yield</span> <span class="n" style="color: #333;">data</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span></span>
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496
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473
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<pre style="margin: 0;"> <span id="LC473" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">tiles</span><span class="p">(),</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint16'</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">=(</span><span class="m" style="color: #099;">48</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">),</span> <span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">))</span></span>
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497
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474
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<pre style="margin: 0;"> <span id="LC474" class="line" lang="mosel"></span>
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498
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<pre style="margin: 0;">-<span id="LC498" class="line" lang="mosel"><span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">resolution</span><span class="p">,</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">:</span></span>
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475
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<pre style="margin: 0;">+<span id="LC475" class="line" lang="mosel"><span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">resolution</span><span class="p">,</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">JPEG</span></span>
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476
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<pre style="margin: 0;">+<span id="LC476" class="line" lang="mosel"><span class="n" style="color: #333;">compression</span><span class="p">.</span> <span class="n" style="color: #333;">Sub</span><span class="p">-</span><span class="n" style="color: #333;">resolution</span> <span class="n" style="color: #333;">images</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">written</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">SubIFDs</span><span class="p">:</span></span>
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499
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477
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<pre style="margin: 0;"> <span id="LC477" class="line" lang="mosel"></span>
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500
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478
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<pre style="margin: 0;"> <span id="LC478" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="m" style="color: #099;">1024</span><span class="p">*</span><span class="m" style="color: #099;">1024</span><span class="p">*</span><span class="m" style="color: #099;">3</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint8'</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">((</span><span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">))</span></span>
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501
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<pre style="margin: 0;">-<span id="LC501" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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502
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<pre style="margin: 0;">-<span id="LC502" class="line" lang="mosel"><span class="p">...</span> <span class="k" style="font-weight: 600;">options</span> <span class="p">=</span> <span class="n" style="color: #333;">dict</span><span class="p">(</span><span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="n" style="color: #333;">compress</span><span class="p">=</span><span class="s1" style="color: #d14;">'jpeg'</span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="p">=</span><span class="n" style="color: #333;">None</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC503" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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504
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<pre style="margin: 0;">-<span id="LC504" class="line" lang="mosel"><span class="p">...</span> <span class="p">#</span> <span class="n" style="color: #333;">save</span> <span class="n" style="color: #333;">pyramid</span> <span class="n" style="color: #333;">levels</span><span class="p">.</span> <span class="k" style="font-weight: 600;">In</span> <span class="n" style="color: #333;">production</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">resampling</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">generate</span> <span class="n" style="color: #333;">levels</span><span class="c1" style="color: #998; font-style: italic;">!</span></span>
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505
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<pre style="margin: 0;">-<span id="LC505" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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506
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<td class="diff-line-num new_line old" data-linenumber="479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC506" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">4</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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507
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<td class="diff-line-num new_line old" data-linenumber="479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC507" class="line" lang="mosel"></span>
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508
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<td class="diff-line-num new_line old" data-linenumber="479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC508" class="line" lang="mosel"><span class="n" style="color: #333;">Access</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">levels</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
509
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<td class="diff-line-num new_line old" data-linenumber="479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC509" class="line" lang="mosel"></span>
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510
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<td class="diff-line-num new_line old" data-linenumber="479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC510" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
511
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<td class="diff-line-num new_line old" data-linenumber="479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC511" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">level</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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512
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<td class="diff-line-num new_line old" data-linenumber="479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC512" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
479
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<pre style="margin: 0;">+<span id="LC479" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="480" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
480
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="mosel"><span class="p">...</span> <span class="k" style="font-weight: 600;">options</span> <span class="p">=</span> <span class="n" style="color: #333;">dict</span><span class="p">(</span><span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="n" style="color: #333;">compression</span><span class="p">=</span><span class="s1" style="color: #d14;">'jpeg'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="481" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
481
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<pre style="margin: 0;">+<span id="LC481" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">subifds</span><span class="p">=</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
482
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="mosel"><span class="p">...</span> <span class="p">#</span> <span class="n" style="color: #333;">save</span> <span class="n" style="color: #333;">pyramid</span> <span class="n" style="color: #333;">levels</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">two</span> <span class="n" style="color: #333;">subifds</span></span>
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<td class="diff-line-num new new_line" data-linenumber="483" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
483
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<pre style="margin: 0;">+<span id="LC483" class="line" lang="mosel"><span class="p">...</span> <span class="p">#</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">production</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">resampling</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">generate</span> <span class="n" style="color: #333;">sub</span><span class="p">-</span><span class="n" style="color: #333;">resolutions</span><span class="c1" style="color: #998; font-style: italic;">!</span></span>
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<td class="diff-line-num new new_line" data-linenumber="484" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
484
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="485" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
485
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<pre style="margin: 0;">+<span id="LC485" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">4</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="486" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
486
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="487" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
487
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<pre style="margin: 0;">+<span id="LC487" class="line" lang="mosel"><span class="n" style="color: #333;">Access</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">levels</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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488
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<pre style="margin: 0;">+<span id="LC488" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
489
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="490" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
490
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">level</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="491" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
491
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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513
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<td class="diff-line-num new_line" data-linenumber="492" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
492
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<pre style="margin: 0;"> <span id="LC492" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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514
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<td class="diff-line-num new_line" data-linenumber="493" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
493
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<pre style="margin: 0;"> <span id="LC493" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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515
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<td class="diff-line-num new_line" data-linenumber="494" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
494
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<pre style="margin: 0;"> <span id="LC494" class="line" lang="mosel"></span>
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516
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<td class="diff-line-num new_line" data-linenumber="495" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
495
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<pre style="margin: 0;"> <span id="LC495" class="line" lang="mosel"><span class="n" style="color: #333;">Iterate</span> <span class="n" style="color: #333;">over</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decode</span> <span class="n" style="color: #333;">single</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">tiles</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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517
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<td class="diff-line-num new_line" data-linenumber="496" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
496
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<pre style="margin: 0;"> <span id="LC496" class="line" lang="mosel"></span>
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518
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<td class="diff-line-num new_line old" data-linenumber="497" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC518" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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497
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<pre style="margin: 0;">+<span id="LC497" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.<span class="idiff left right">ome.</span>tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num old_line" data-linenumber="519" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
519
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<td class="diff-line-num new_line" data-linenumber="498" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
498
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<pre style="margin: 0;"> <span id="LC498" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">fh</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">filehandle</span></span>
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520
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<td class="diff-line-num new_line" data-linenumber="499" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
499
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<pre style="margin: 0;"> <span id="LC499" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">page</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">:</span></span>
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521
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<td class="diff-line-num new_line old" data-linenumber="500" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC521" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">jpegtables</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s1" style="color: #d14;">'JPEGTables'</span><span class="p">,</span> <span class="n" style="color: #333;">None</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
522
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<td class="diff-line-num new_line old" data-linenumber="500" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC522" class="line" lang="mosel"><span class="p">...</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">jpegtables</span> <span class="n" style="color: #333;">is</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">None</span><span class="p">:</span></span>
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523
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<td class="diff-line-num new_line old" data-linenumber="500" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC523" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">jpegtables</span> <span class="p">=</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">.</span><span class="n" style="color: #333;">value</span></span>
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<td class="diff-line-num old_line" data-linenumber="524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
524
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<td class="diff-line-num new_line" data-linenumber="500" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
500
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<pre style="margin: 0;"> <span id="LC500" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">offset</span><span class="p">,</span> <span class="n" style="color: #333;">bytecount</span><span class="p">)</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">enumerate</span><span class="p">(</span></span>
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<td class="diff-line-num old_line" data-linenumber="525" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
525
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<td class="diff-line-num new_line" data-linenumber="501" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
501
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<pre style="margin: 0;"> <span id="LC501" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">zip</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">dataoffsets</span><span class="p">,</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">databytecounts</span><span class="p">)</span></span>
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526
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<td class="diff-line-num new_line" data-linenumber="502" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
502
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<pre style="margin: 0;"> <span id="LC502" class="line" lang="mosel"><span class="p">...</span> <span class="p">):</span></span>
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527
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503
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<pre style="margin: 0;"> <span id="LC503" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">seek</span><span class="p">(</span><span class="n" style="color: #333;">offset</span><span class="p">)</span></span>
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528
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504
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<pre style="margin: 0;"> <span id="LC504" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="nb" style="color: #0086b3;">read</span><span class="p">(</span><span class="n" style="color: #333;">bytecount</span><span class="p">)</span></span>
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529
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<pre style="margin: 0;">-<span id="LC529" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tile</span><span class="p">,</span> <span class="n" style="color: #333;">indices</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">decode</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">)</span></span></pre>
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505
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<pre style="margin: 0;">+<span id="LC505" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">tile</span><span class="p">,</span> <span class="n" style="color: #333;">indices</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">decode</span><span class="p">(</span></span>
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<td class="diff-line-num new new_line" data-linenumber="506" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
506
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<pre style="margin: 0;">+<span id="LC506" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">=</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">jpegtables</span></span>
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507
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<pre style="margin: 0;">+<span id="LC507" class="line" lang="mosel"><span class="p">...</span> <span class="p">)</span></span>
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508
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<pre style="margin: 0;">+<span id="LC508" class="line" lang="mosel"></span>
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509
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<pre style="margin: 0;">+<span id="LC509" class="line" lang="mosel"><span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">zarr</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">access</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">images</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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510
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">import</span> <span class="n" style="color: #333;">zarr</span></span>
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<td class="diff-line-num new new_line" data-linenumber="512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
512
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<pre style="margin: 0;">+<span id="LC512" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">store</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">aszarr</span><span class="p">=</span><span class="nb" style="color: #0086b3;">True</span><span class="p">)</span></span>
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513
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">z</span> <span class="p">=</span> <span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">open</span><span class="p">(</span><span class="n" style="color: #333;">store</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">=</span><span class="s1" style="color: #d14;">'r'</span><span class="p">)</span></span>
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514
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">z</span></span>
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515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="mosel"><span class="p"><</span><span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">hierarchy</span><span class="p">.</span><span class="n" style="color: #333;">Group</span> <span class="s1" style="color: #d14;">'/'</span> <span class="nb" style="color: #0086b3;">read</span><span class="p">-</span><span class="n" style="color: #333;">only</span><span class="p">></span></span>
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<td class="diff-line-num new new_line" data-linenumber="516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">z</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span> <span class="p">#</span> <span class="n" style="color: #333;">base</span> <span class="n" style="color: #333;">layer</span></span>
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<td class="diff-line-num new new_line" data-linenumber="517" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="mosel"><span class="p"><</span><span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">core</span><span class="p">.</span><span class="k" style="font-weight: 600;">Array</span> <span class="s1" style="color: #d14;">'/0'</span> <span class="p">(</span><span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">)</span> <span class="n" style="color: #333;">uint8</span> <span class="nb" style="color: #0086b3;">read</span><span class="p">-</span><span class="n" style="color: #333;">only</span><span class="p">></span></span>
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<td class="diff-line-num new new_line" data-linenumber="518" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">store</span><span class="p">.</span><span class="n" style="color: #333;">close</span><span class="p">()</span></span>
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519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="520" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
520
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="mosel"><span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">stack</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">name</span> <span class="n" style="color: #333;">pattern</span><span class="p">:</span></span>
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521
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="mosel"></span>
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522
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001T001.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001T002.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span> <span class="p">=</span> <span class="n" style="color: #333;">TiffSequence</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001*.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">pattern</span><span class="p">=</span><span class="s1" style="color: #d14;">'axes'</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="mosel"><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">axes</span></span>
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="mosel"><span class="s1" style="color: #d14;">'CT'</span></span>
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="mosel"><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="mosel"><span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">aszarr</span><span class="p">()</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">store</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="mosel"><span class="p">...</span> <span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">open</span><span class="p">(</span><span class="n" style="color: #333;">store</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">=</span><span class="s1" style="color: #d14;">'r'</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="mosel"><span class="p"><</span><span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">core</span><span class="p">.</span><span class="k" style="font-weight: 600;">Array</span> <span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">)</span> <span class="n" style="color: #333;">float64</span> <span class="nb" style="color: #0086b3;">read</span><span class="p">-</span><span class="n" style="color: #333;">only</span><span class="p">></span></span>
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="mosel"><span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">close</span><span class="p">()</span></span></pre>
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<a href="https://salsa.debian.org/python-team/packages/tifffile/-/compare/5bea9ad9f9caeb54e479da614a97feac4110e3ab...1e2cb7a486032b83d3201fbcd054a84b89f31772#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">tifffile (2020<span class="idiff left right">0717-3) UNRELEASED; urgency=low</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">tifffile (2020<span class="idiff left right">1118-1) unstable; urgency=medium</span></span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> [ Debian Janitor ]</span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,7 +10,11 @@ tifffile (20200717-3) UNRELEASED; urgency=low</td>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * d/control: Update Vcs-* fields with new Debian Python Team Salsa</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> layout.</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> -- Debian Janitor <janitor@jelmer.uk> Sun, 30 Aug 2020 07:14:14 -0000</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> [ Ole Streicher ]</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> * New upstream version 20201118</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> * Rediff patches</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> -- Ole Streicher <olebole@debian.org> Fri, 20 Nov 2020 08:56:22 +0100</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">tifffile (20200717-2) unstable; urgency=low</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<li id="8fc3c882df7e60951ede377aba4719bd959ad8c0">
<a href="https://salsa.debian.org/python-team/packages/tifffile/-/compare/5bea9ad9f9caeb54e479da614a97feac4110e3ab...1e2cb7a486032b83d3201fbcd054a84b89f31772#8fc3c882df7e60951ede377aba4719bd959ad8c0"><strong>debian/patches/Disable-tests-that-require-remote-files.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,28 +7,28 @@ Subject: Disable tests that require remote files</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"> 1 file changed, 4 insertions(+), 2 deletions(-)</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff">diff --git a/tests/test_tifffile.py b/tests/test_tifffile.py</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="gh" style="color: #999;">index <span class="idiff left right">e77fca8..c94e905</span> 100644</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gh" style="color: #999;">index <span class="idiff left right">bfeaeac..bae2efd</span> 100644</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/test_tifffile.py</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/test_tifffile.py</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="p">@@ -1<span class="idiff left right">63,7 +16</span>3,7 @@</span> from tifffile.tifffile import (</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="p">@@ -1<span class="idiff left right">73,7 +17</span>3,7 @@</span> from tifffile.tifffile import (</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"> )</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"> # skip certain tests</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-SKIP_HUGE = False</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+SKIP_HUGE = True</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="diff"> SKIP_EXTENDED = False</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"> SKIP_ROUNDTRIPS = False</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="diff"> SKIP_PUBLIC = False # skip public files</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"><span class="p"><span class="idiff left">@@ -390,6 +390,7 @@</span></span><span class="idiff right"> def test_issue_legacy_kwargs():</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"><span class="idiff left"> pass</span></span><span class="idiff right">
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="idiff left"> SKIP_PRIVATE = False # skip private files</span></span><span class="idiff right">
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="p"><span class="idiff left">@@ -438,6 +438,7 @@</span></span><span class="idiff right"> def test_issue_imread_kwargs_legacy():</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> @pytest.mark.skipif(SKIP_PRIVATE, reason=REASON)</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+@pytest.mark.skip(reason="file not available")</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="diff"> def test_issue_infinite_loop():</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="diff"> """Test infinite loop reading more than two tags of same code in IFD."""</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="diff"> # Reported by D. Hughes on 2019.7.26</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="diff"><span class="p">@@ -<span class="idiff left right">1864,7 +1865</span>,7 @@</span> def test_func_pformat_xml():</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="diff"> <span class="idiff left right"> '<?xml version="1.0" encoding="ISO-8859-1" ?> <Dimap_Document'</span>)</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="p">@@ -<span class="idiff left right">2336,7 +2337</span>,7 @@</span> def test_func_pformat_xml():</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> )</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="diff"> assert pformat(value, height=8, width=60) == (</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- """<?xml version='1.0' encoding='ISO-8859-1'?></span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,11 +36,11 @@ index e77fca8..c94e905 100644</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="diff"> <Dimap_Document name="band2.dim"></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="diff"> <Metadata_Id></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="diff"> <METADATA_FORMAT version="2.12.1">DIMAP</METADATA_FORMAT></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="diff"><span class="p">@@ -2<span class="idiff left right">062,6 +2063</span>,7 @@</span> def assert_filehandle(fh, offset=0):</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="diff"> <span class="idiff left right"> numpy.arange(255, dtype='uint8')</span>)</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"><span class="p">@@ -2<span class="idiff left right">539,6 +2540</span>,7 @@</span> def assert_filehandle(fh, offset=0):</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"> )</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+@pytest.mark.skip(reason="remote connection not available")</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="diff"> def test_filehandle_seekable():</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="diff"> """Test FileHandle must be seekable."""</span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="diff"> <span class="idiff left right">try:</span></span></pre>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"> <span class="idiff left right">import ssl</span></span></pre>
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<li id="08a78963ed0375c66cd9355408745a1b2f5a79f8">
<a href="https://salsa.debian.org/python-team/packages/tifffile/-/compare/5bea9ad9f9caeb54e479da614a97feac4110e3ab...1e2cb7a486032b83d3201fbcd054a84b89f31772#08a78963ed0375c66cd9355408745a1b2f5a79f8"><strong>debian/patches/Don-t-install-lsm2bin.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,14 +8,14 @@ This seems not an end-user script, and we don't have a manpage for it</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"> 1 file changed, 1 deletion(-)</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff">diff --git a/setup.py b/setup.py</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="gh" style="color: #999;">index <span class="idiff left right">11e60e7..3b45f61</span> 100644</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gh" style="color: #999;">index <span class="idiff left right">6e6c76b..31f4737</span> 100644</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/setup.py</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/setup.py</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"><span class="p">@@ -<span class="idiff left right">80,7 +80</span>,6 @@</span> setup(</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="p">@@ -<span class="idiff left right">106,7 +106</span>,6 @@</span> setup(</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"> entry_points={</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"> 'console_scripts': [</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"> 'tifffile = tifffile:main',</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 'lsm2bin = tifffile.lsm2bin:main',</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="diff"> ],</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="diff"> # 'napari.plugin': ['tifffile = tifffile.napari_tifffile'],</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"> <span class="idiff left right"> </span>},</span></pre>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> },</span></pre>
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<a href="https://salsa.debian.org/python-team/packages/tifffile/-/compare/5bea9ad9f9caeb54e479da614a97feac4110e3ab...1e2cb7a486032b83d3201fbcd054a84b89f31772#5c8eaf357996c4182d2d4f064e7dba9683e0c47e"><strong>debian/patches/Skip-tests-that-require-codec-or-private-data.patch</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">From: Ole Streicher <olebole@debian.org></span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="p">Date: Sat, 18 Jul 2020 11:39:56 +0200</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Subject: Skip tests that require codec or private data</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff">---</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"> tests/test_tifffile.py | 4 ++++</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"> 1 file changed, 4 insertions(+)</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff">diff --git a/tests/test_tifffile.py b/tests/test_tifffile.py</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="gh" style="color: #999;">index c94e905..717b734 100644</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/test_tifffile.py</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/test_tifffile.py</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="p">@@ -1846,6 +1846,7 @@</span> def test_func_pformat_numpy():</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"> 5900040.])""")</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+@pytest.mark.xfail(reason="string asserts for XML is not reliable")</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"> def test_func_pformat_xml():</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"> """Test pformat function with XML."""</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"> value = """<?xml version="1.0" encoding="ISO-8859-1" ?></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"><span class="p">@@ -4211,6 +4212,7 @@</span> def test_read_subifd8():</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"> assert__str__(tif)</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+@pytest.mark.skipif(SKIP_CODECS, reason=REASON)</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"> def test_read_tiles():</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="diff"> """Test iteration over tiles, manually and via page.segments."""</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"> data = numpy.arange(600*500*3, dtype='uint8').reshape((600, 500, 3))</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="diff"><span class="p">@@ -9029,6 +9031,7 @@</span> def test_write_extrasamples_planar_rgb():</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="diff"> assert__str__(tif)</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+@pytest.mark.skipif(SKIP_PRIVATE, reason=REASON)</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="diff"> def test_write_cfa():</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="diff"> """Test write uncompressed CFA image."""</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="diff"> # TODO: write a valid TIFF/EP file</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="diff"><span class="p">@@ -9327,6 +9330,7 @@</span> def test_write_volume():</span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="diff"> assert__str__(tif)</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+@pytest.mark.skipif(SKIP_CODECS, reason=REASON)</span></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="diff"> def test_write_volume_png():</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="diff"> """Test write tiled volume using an image compressor."""</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="diff"> data = random_data('uint8', (16, 64, 96, 3))</span></pre>
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<a href="https://salsa.debian.org/python-team/packages/tifffile/-/compare/5bea9ad9f9caeb54e479da614a97feac4110e3ab...1e2cb7a486032b83d3201fbcd054a84b89f31772#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Don-t-install-lsm2bin.patch</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Disable-tests-that-require-remote-files.patch</span></pre>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Skip-tests-that-require-codec-or-private-data.patch</span></pre>
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<a href="https://salsa.debian.org/python-team/packages/tifffile/-/compare/5bea9ad9f9caeb54e479da614a97feac4110e3ab...1e2cb7a486032b83d3201fbcd054a84b89f31772#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,11 +17,15 @@ version += ('.' + buildnumber) if buildnumber else ''</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="python"><span class="n" style="color: #333;">description</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">search</span><span class="p">(</span><span class="s" style="color: #d14;">r'"""(.*)\.(?:\r\n|\r|\n)'</span><span class="p">,</span> <span class="n" style="color: #333;">code</span><span class="p">).</span><span class="n" style="color: #333;">groups</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="python"><span class="n" style="color: #333;">readme</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">search</span><span class="p">(</span><span class="s" style="color: #d14;">r'(?:\r\n|\r|\n){2}"""(.*)"""(?:\r\n|\r|\n){2}__version__'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="python"> <span class="n" style="color: #333;">code</span><span class="p">,</span> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">MULTILINE</span> <span class="o" style="font-weight: 600;">|</span> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">DOTALL</span><span class="p">).</span><span class="n" style="color: #333;">groups</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="python"><span class="n" style="color: #333;">readme</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">'</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">([</span><span class="n" style="color: #333;">description</span><span class="p">,</span> <span class="s" style="color: #d14;">'='</span> <span class="o" style="font-weight: 600;">*</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">description</span><span class="p">)]</span> <span class="o" style="font-weight: 600;">+</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="python"> <span class="n" style="color: #333;">readme</span><span class="p">.</span><span class="n" style="color: #333;">splitlines</span><span class="p">()[</span><span class="mi" style="color: #099;">1</span><span class="p">:])</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="python"><span class="n" style="color: #333;">readme</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">search</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="python"> <span class="s" style="color: #d14;">r'(?:\r\n|\r|\n){2}"""(.*)"""(?:\r\n|\r|\n){2}__version__'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"> <span class="n" style="color: #333;">code</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">MULTILINE</span> <span class="o" style="font-weight: 600;">|</span> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">DOTALL</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"><span class="p">).</span><span class="n" style="color: #333;">groups</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="python"><span class="n" style="color: #333;">readme</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">'</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"> <span class="p">[</span><span class="n" style="color: #333;">description</span><span class="p">,</span> <span class="s" style="color: #d14;">'='</span> <span class="o" style="font-weight: 600;">*</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">description</span><span class="p">)]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">readme</span><span class="p">.</span><span class="n" style="color: #333;">splitlines</span><span class="p">()[</span><span class="mi" style="color: #099;">1</span><span class="p">:]</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">'sdist'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">argv</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># update README, LICENSE, and CHANGES files</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -29,8 +33,11 @@ if 'sdist' in sys.argv:</td>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="s" style="color: #d14;">'README.rst'</span><span class="p">,</span> <span class="s" style="color: #d14;">'w'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fh</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="python"> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="n" style="color: #333;">readme</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="python"> <span class="n" style="color: #333;">license</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">search</span><span class="p">(</span><span class="s" style="color: #d14;">r'(# Copyright.*?(?:\r\n|\r|\n))(?:\r\n|\r|\n)+""'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="python"> <span class="n" style="color: #333;">code</span><span class="p">,</span> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">MULTILINE</span> <span class="o" style="font-weight: 600;">|</span> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">DOTALL</span><span class="p">).</span><span class="n" style="color: #333;">groups</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="python"> <span class="n" style="color: #333;">license</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">search</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="python"> <span class="s" style="color: #d14;">r'(# Copyright.*?(?:\r\n|\r|\n))(?:\r\n|\r|\n)+""'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="python"> <span class="n" style="color: #333;">code</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">MULTILINE</span> <span class="o" style="font-weight: 600;">|</span> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">DOTALL</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="python"> <span class="p">).</span><span class="n" style="color: #333;">groups</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="python"> <span class="n" style="color: #333;">license</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">license</span><span class="p">.</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">'# '</span><span class="p">,</span> <span class="s" style="color: #d14;">''</span><span class="p">).</span><span class="n" style="color: #333;">replace</span><span class="p">(</span><span class="s" style="color: #d14;">'#'</span><span class="p">,</span> <span class="s" style="color: #d14;">''</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -38,8 +45,15 @@ if 'sdist' in sys.argv:</td>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="python"> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="s" style="color: #d14;">'BSD 3-Clause License</span><span class="se" style="color: #d14;">\n\n</span><span class="s" style="color: #d14;">'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="python"> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="n" style="color: #333;">license</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="python"> <span class="n" style="color: #333;">revisions</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">search</span><span class="p">(</span><span class="s" style="color: #d14;">r'(?:\r\n|\r|\n){2}(Revisions.*) \.\.\.'</span><span class="p">,</span> <span class="n" style="color: #333;">readme</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="python"> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">MULTILINE</span> <span class="o" style="font-weight: 600;">|</span> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">DOTALL</span><span class="p">).</span><span class="n" style="color: #333;">groups</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">strip</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"> <span class="n" style="color: #333;">revisions</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="python"> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">search</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="python"> <span class="s" style="color: #d14;">r'(?:\r\n|\r|\n){2}(Revisions.*) \.\.\.'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="python"> <span class="n" style="color: #333;">readme</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="python"> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">MULTILINE</span> <span class="o" style="font-weight: 600;">|</span> <span class="n" style="color: #333;">re</span><span class="p">.</span><span class="n" style="color: #333;">DOTALL</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="python"> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"> <span class="p">.</span><span class="n" style="color: #333;">groups</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="python"> <span class="p">.</span><span class="n" style="color: #333;">strip</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="python"> <span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="s" style="color: #d14;">'CHANGES.rst'</span><span class="p">,</span> <span class="s" style="color: #d14;">'r'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">fh</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="python"> <span class="n" style="color: #333;">old</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">()</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -65,25 +79,37 @@ setup(</td>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># 'Documentation': 'https://',</span></span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="python"> <span class="p">},</span></span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="python"> <span class="n" style="color: #333;">packages</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">'tifffile'</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="python"> <span class="n" style="color: #333;">python_requires</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'>=3.<span class="idiff left right">6</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="python"> <span class="n" style="color: #333;">python_requires</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'>=3.<span class="idiff left right">7</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="python"> <span class="n" style="color: #333;">install_requires</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="python"> <span class="s" style="color: #d14;">'numpy>=1.15.1'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># 'imagecodecs>=2020.<span class="idiff left right">2.18</span>',</span></span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># 'imagecodecs>=2020.<span class="idiff left right">5.30</span>',</span></span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="python"> <span class="n" style="color: #333;">extras_require</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="python"> <span class="s" style="color: #d14;">'all'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'imagecodecs>=2020.2.18'</span><span class="p">,</span> <span class="s" style="color: #d14;">'matplotlib>=3.1'</span><span class="p">,</span> <span class="s" style="color: #d14;">'lxml'</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="python"> <span class="s" style="color: #d14;">'all'</span><span class="p">:</span> <span class="p">[</span></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="python"> <span class="s" style="color: #d14;">'imagecodecs>=2020.5.30'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="python"> <span class="s" style="color: #d14;">'matplotlib>=3.2'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="python"> <span class="s" style="color: #d14;">'lxml'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># 'zarr>=2.5.0'</span></span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="python"> <span class="p">]</span></span>
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94
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="python"> <span class="p">},</span></span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="python"> <span class="n" style="color: #333;">tests_require</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="python"> <span class="s" style="color: #d14;">'pytest'</span><span class="p">,</span> <span class="s" style="color: #d14;">'imagecodecs'</span><span class="p">,</span> <span class="s" style="color: #d14;">'czifile'</span><span class="p">,</span> <span class="s" style="color: #d14;">'cmapfile'</span><span class="p">,</span> <span class="s" style="color: #d14;">'oiffile'</span><span class="p">,</span> <span class="s" style="color: #d14;">'lfdfiles'</span><span class="p">,</span></span>
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78
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="python"> <span class="s" style="color: #d14;">'roifile'</span><span class="p">,</span> <span class="s" style="color: #d14;">'lxml'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="python"> <span class="s" style="color: #d14;">'pytest'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="python"> <span class="s" style="color: #d14;">'imagecodecs'</span><span class="p">,</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="python"> <span class="s" style="color: #d14;">'czifile'</span><span class="p">,</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="python"> <span class="s" style="color: #d14;">'cmapfile'</span><span class="p">,</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="python"> <span class="s" style="color: #d14;">'oiffile'</span><span class="p">,</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="python"> <span class="s" style="color: #d14;">'lfdfiles'</span><span class="p">,</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="python"> <span class="s" style="color: #d14;">'roifile'</span><span class="p">,</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="python"> <span class="s" style="color: #d14;">'lxml'</span><span class="p">,</span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="python"> <span class="s" style="color: #d14;">'zarr>=2.5.0'</span><span class="p">,</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="python"> <span class="p">],</span></span>
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="python"> <span class="n" style="color: #333;">entry_points</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span></span>
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="python"> <span class="s" style="color: #d14;">'console_scripts'</span><span class="p">:</span> <span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="python"> <span class="s" style="color: #d14;">'tifffile = tifffile:main'</span><span class="p">,</span></span>
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="python"> <span class="s" style="color: #d14;">'lsm2bin = tifffile.lsm2bin:main'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># 'napari.plugin': ['tifffile = tifffile.napari_tifffile'],</span></span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="python"> <span class="idiff left right"> </span><span class="p">},</span></span>
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="python"> <span class="p">},</span></span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="python"> <span class="n" style="color: #333;">platforms</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">'any'</span><span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="python"> <span class="n" style="color: #333;">classifiers</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="python"> <span class="s" style="color: #d14;">'Development Status :: 4 - Beta'</span><span class="p">,</span></span>
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<a href="https://salsa.debian.org/python-team/packages/tifffile/-/compare/5bea9ad9f9caeb54e479da614a97feac4110e3ab...1e2cb7a486032b83d3201fbcd054a84b89f31772#626af34e8204774ea46e20955936146dedc828eb"><strong>tests/conftest.py</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># tifffile/tests/conftest.py</span></span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="python"><span class="n" style="color: #333;">collect_ignore</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="s" style="color: #d14;">'_tmp'</span><span class="p">,</span> <span class="s" style="color: #d14;">'data'</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">os</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="python"></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">environ</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'SKIP_CODECS'</span><span class="p">,</span> <span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="python"> <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">modules</span><span class="p">[</span><span class="s" style="color: #d14;">'imagecodecs'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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4
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">pytest_report_header</span><span class="p">(</span><span class="n" style="color: #333;">config</span><span class="p">):</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,11 +13,17 @@ def pytest_report_header(config):</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">numpy</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">__version__</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">numpy</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">tifffile</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">__version__</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tifffile</span></span>
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10
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">test_tifffile</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">config</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="python"></span>
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11
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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12
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">imagecodecs</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">__version__</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">imagecodecs</span></span>
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13
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">ImportError</span><span class="p">:</span></span>
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14
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="python"> <span class="n" style="color: #333;">imagecodecs</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'N/A'</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="s" style="color: #d14;">'versions: tifffile-%s, imagecodecs-%s, numpy-%s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">'</span></span>
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16
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<td class="diff-line-num new_line old" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="python"> <span class="s" style="color: #d14;">'test config: %s'</span> <span class="o" style="font-weight: 600;">%</span> <span class="p">(</span><span class="n" style="color: #333;">tifffile</span><span class="p">,</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">,</span> <span class="n" style="color: #333;">numpy</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="p">()))</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span></span>
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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"> <span class="s" style="color: #d14;">'versions: tifffile-{}, imagecodecs-{}, numpy-{}</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">'</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"> <span class="s" style="color: #d14;">'test config: {}'</span><span class="p">.</span><span class="nb" style="color: #0086b3;">format</span><span class="p">(</span><span class="n" style="color: #333;">tifffile</span><span class="p">,</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">,</span> <span class="n" style="color: #333;">numpy</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="p">())</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"> <span class="p">)</span></span>
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17
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">Exception</span><span class="p">:</span></span>
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18
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26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python"> <span class="k" style="font-weight: 600;">pass</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"><span class="n" style="color: #333;">collect_ignore</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="s" style="color: #d14;">'_tmp'</span><span class="p">,</span> <span class="s" style="color: #d14;">'data'</span><span class="p">]</span></span></pre>
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<li id="0e68eb77c1fac130dbc2b1470ebea5146df3de0b">
<a href="https://salsa.debian.org/python-team/packages/tifffile/-/compare/5bea9ad9f9caeb54e479da614a97feac4110e3ab...1e2cb7a486032b83d3201fbcd054a84b89f31772#0e68eb77c1fac130dbc2b1470ebea5146df3de0b"><strong>tests/test_tifffile.py</strong></a>
The diff for this file was not included because it is too large.
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<a href="https://salsa.debian.org/python-team/packages/tifffile/-/compare/5bea9ad9f9caeb54e479da614a97feac4110e3ab...1e2cb7a486032b83d3201fbcd054a84b89f31772#624d16e4d51d3d7766973c48f57be57a653d8843"><strong>tifffile.egg-info/PKG-INFO</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">Metadata</span><span class="p">-</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2.1</span></span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="mosel"><span class="n" style="color: #333;">Name</span><span class="p">:</span> <span class="n" style="color: #333;">tifffile</span></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="mosel"><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">7.17</span></span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">11.18</span></span></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"><span class="n" style="color: #333;">Summary</span><span class="p">:</span> <span class="n" style="color: #333;">Read</span> <span class="k" style="font-weight: 600;">and</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">TIFF</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span> <span class="n" style="color: #333;">files</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="mosel"><span class="n" style="color: #333;">Home</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">lfd</span><span class="p">.</span><span class="n" style="color: #333;">uci</span><span class="p">.</span><span class="n" style="color: #333;">edu</span><span class="p">/~</span><span class="n" style="color: #333;">gohlke</span><span class="p">/</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="mosel"><span class="n" style="color: #333;">Author</span><span class="p">:</span> <span class="n" style="color: #333;">Christoph</span> <span class="n" style="color: #333;">Gohlke</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,23 +20,25 @@ Description: Read and write TIFF(r) files</td>
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="mosel"> <span class="n" style="color: #333;">NIHImage</span><span class="p">,</span> <span class="n" style="color: #333;">ImageJ</span><span class="p">,</span> <span class="n" style="color: #333;">MicroManager</span><span class="p">,</span> <span class="n" style="color: #333;">FluoView</span><span class="p">,</span> <span class="n" style="color: #333;">ScanImage</span><span class="p">,</span> <span class="n" style="color: #333;">SEQ</span><span class="p">,</span> <span class="n" style="color: #333;">GEL</span><span class="p">,</span> <span class="n" style="color: #333;">SVS</span><span class="p">,</span> <span class="n" style="color: #333;">SCN</span><span class="p">,</span> <span class="n" style="color: #333;">SIS</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="mosel"> <span class="n" style="color: #333;">ZIF</span> <span class="p">(</span><span class="n" style="color: #333;">Zoomable</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">),</span> <span class="n" style="color: #333;">QPTIFF</span> <span class="p">(</span><span class="n" style="color: #333;">QPI</span><span class="p">),</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="mosel"> </span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="mosel"> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">data</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="nb" style="color: #0086b3;">read</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">zarr</span> <span class="n" style="color: #333;">arrays</span><span class="p">/</span><span class="n" style="color: #333;">groups</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">strips</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">tiles</span><span class="p">,</span> <span class="n" style="color: #333;">pages</span> <span class="p">(</span><span class="n" style="color: #333;">IFDs</span><span class="p">),</span> <span class="n" style="color: #333;">SubIFDs</span><span class="p">,</span> <span class="n" style="color: #333;">higher</span> <span class="n" style="color: #333;">order</span> <span class="n" style="color: #333;">series</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">levels</span><span class="p">.</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="mosel"> </span>
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<td class="diff-line-num new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="mosel"> <span class="n" style="color: #333;">Numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">written</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">BigTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">hyperstack</span></span>
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<td class="diff-line-num new_line old" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">compatible</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">memory</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">mappable</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">tiled</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">predicted</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff right">or</span></span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="mosel"> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">form</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="mosel"> <span class="n" style="color: #333;">compatible</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">volumetric</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">pyramidal</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">memory</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">mappable</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">tiled</span></span><span class="p"><span class="idiff right">,</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="mosel"> <span class="n" style="color: #333;"><span class="idiff left">predicted</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">or</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">form</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="mosel"> <span class="n" style="color: #333;">A</span> <span class="n" style="color: #333;">subset</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">specification</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">supported</span><span class="p">,</span> <span class="n" style="color: #333;">mainly</span> <span class="n" style="color: #333;">uncompressed</span> <span class="k" style="font-weight: 600;">and</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="mosel"> <span class="n" style="color: #333;">losslessly</span> <span class="n" style="color: #333;">compressed</span> <span class="m" style="color: #099;">8</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="k" style="font-weight: 600;">integer</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">float</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="mosel"> <span class="n" style="color: #333;">grayscale</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">sample</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="mosel"> <span class="n" style="color: #333;">Specifically</span><span class="p">,</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">slices</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">CCITT</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">OJPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">,</span></span>
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31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="mosel"> <span class="n" style="color: #333;">chroma</span> <span class="n" style="color: #333;">subsampling</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">,</span> <span class="n" style="color: #333;">color</span> <span class="n" style="color: #333;">space</span> <span class="n" style="color: #333;">transformations</span><span class="p">,</span></span>
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32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="mosel"> <span class="n" style="color: #333;">samples</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">differing</span> <span class="n" style="color: #333;">types</span><span class="p">,</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">IPTC</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">XMP</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">implemented</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="mosel"> <span class="n" style="color: #333;">A</span> <span class="n" style="color: #333;">subset</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">specification</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">supported</span><span class="p">,</span> <span class="n" style="color: #333;">mainly</span> <span class="m" style="color: #099;">8</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">integer</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">32</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">float</span><span class="p">,</span> <span class="n" style="color: #333;">grayscale</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">sample</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="mosel"> <span class="n" style="color: #333;">Specifically</span><span class="p">,</span> <span class="n" style="color: #333;">CCITT</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">OJPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">,</span> <span class="n" style="color: #333;">chroma</span> <span class="n" style="color: #333;">subsampling</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">JPEG</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="mosel"> <span class="n" style="color: #333;">compression</span><span class="p">,</span> <span class="n" style="color: #333;">color</span> <span class="n" style="color: #333;">space</span> <span class="n" style="color: #333;">transformations</span><span class="p">,</span> <span class="n" style="color: #333;">samples</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">differing</span> <span class="n" style="color: #333;">types</span><span class="p">,</span> <span class="k" style="font-weight: 600;">or</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="mosel"> <span class="n" style="color: #333;">IPTC</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">XMP</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">implemented</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="mosel"> <span class="n" style="color: #333;">TIFF</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">),</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">Tagged</span> <span class="n" style="color: #333;">Image</span> <span class="n" style="color: #333;">File</span> <span class="n" style="color: #333;">Format</span><span class="p">,</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">trademark</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">under</span> <span class="n" style="color: #333;">control</span> <span class="k" style="font-weight: 600;">of</span></span>
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35
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="mosel"> <span class="n" style="color: #333;">Adobe</span> <span class="n" style="color: #333;">Systems</span> <span class="n" style="color: #333;">Incorporated</span><span class="p">.</span> <span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">allows</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">larger</span> <span class="n" style="color: #333;">than</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="mosel"> <span class="n" style="color: #333;">STK</span><span class="p">,</span> <span class="n" style="color: #333;">LSM</span><span class="p">,</span> <span class="n" style="color: #333;">FluoView</span><span class="p">,</span> <span class="n" style="color: #333;">SGI</span><span class="p">,</span> <span class="n" style="color: #333;">SEQ</span><span class="p">,</span> <span class="n" style="color: #333;">GEL</span><span class="p">,</span> <span class="n" style="color: #333;">QPTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">custom</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="mosel"> <span class="n" style="color: #333;">STK</span><span class="p">,</span> <span class="n" style="color: #333;">LSM</span><span class="p">,</span> <span class="n" style="color: #333;">FluoView</span><span class="p">,</span> <span class="n" style="color: #333;">SGI</span><span class="p">,</span> <span class="n" style="color: #333;">SEQ</span><span class="p">,</span> <span class="n" style="color: #333;">GEL</span><span class="p">,</span> <span class="n" style="color: #333;">QPTIFF</span><span class="p">,</span> <span class="n" style="color: #333;">NDPI</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">SCN</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">,</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">custom</span></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="mosel"> <span class="n" style="color: #333;">extensions</span> <span class="n" style="color: #333;">defined</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Devices</span> <span class="p">(</span><span class="n" style="color: #333;">Universal</span> <span class="n" style="color: #333;">Imaging</span> <span class="n" style="color: #333;">Corporation</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="mosel"> <span class="n" style="color: #333;">Carl</span> <span class="n" style="color: #333;">Zeiss</span> <span class="n" style="color: #333;">MicroImaging</span><span class="p">,</span> <span class="n" style="color: #333;">Olympus</span><span class="p">,</span> <span class="n" style="color: #333;">Silicon</span> <span class="n" style="color: #333;">Graphics</span> <span class="n" style="color: #333;">International</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="mosel"> <span class="n" style="color: #333;">Media</span> <span class="n" style="color: #333;">Cybernetics</span><span class="p">,</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Dynamics</span><span class="p">,</span> <span class="n" style="color: #333;">PerkinElmer</span><span class="p">,</span> <span class="n" style="color: #333;">Hamamatsu</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">the</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="mosel"> <span class="n" style="color: #333;">Media</span> <span class="n" style="color: #333;">Cybernetics</span><span class="p">,</span> <span class="n" style="color: #333;">Molecular</span> <span class="n" style="color: #333;">Dynamics</span><span class="p">,</span> <span class="n" style="color: #333;">PerkinElmer</span><span class="p">,</span> <span class="n" style="color: #333;">Hamamatsu</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left">Leica</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">the</span></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="mosel"> <span class="n" style="color: #333;">Open</span> <span class="n" style="color: #333;">Microscopy</span> <span class="n" style="color: #333;">Environment</span> <span class="n" style="color: #333;">consortium</span><span class="p">,</span> <span class="n" style="color: #333;">respectively</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="mosel"> <span class="n" style="color: #333;">For</span> <span class="nf" style="color: #900; font-weight: 600;">command</span> <span class="n" style="color: #333;">line</span> <span class="n" style="color: #333;">usage</span> <span class="nf" style="color: #900; font-weight: 600;">run</span> <span class="p">``</span><span class="n" style="color: #333;">python</span> <span class="p">-</span><span class="n" style="color: #333;">m</span> <span class="n" style="color: #333;">tifffile</span> <span class="p">--</span><span class="n" style="color: #333;">help</span><span class="p">``</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -49,26 +51,91 @@ Description: Read and write TIFF(r) files</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="mosel"> <span class="p">:</span><span class="n" style="color: #333;">License</span><span class="p">:</span> <span class="n" style="color: #333;">BSD</span> <span class="m" style="color: #099;">3</span><span class="p">-</span><span class="n" style="color: #333;">Clause</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="mosel"> <span class="p">:</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">7.17</span></span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="mosel"> <span class="p">:</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">2020.<span class="idiff left right">11.18</span></span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Requirements</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="mosel"> <span class="p">------------</span></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="mosel"> <span class="n" style="color: #333;">This</span> <span class="n" style="color: #333;">release</span> <span class="n" style="color: #333;">has</span> <span class="n" style="color: #333;">been</span> <span class="n" style="color: #333;">tested</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">following</span> <span class="k" style="font-weight: 600;">requirements</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">dependencies</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">may</span> <span class="n" style="color: #333;">work</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="mosel"> </span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">CPython</span> <span class="m" style="color: #099;">3.7.<span class="idiff left">8</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.8.4</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.9.0</span></span><span class="n" style="color: #333;"><span class="idiff right">b4</span></span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">python</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Numpy</span> <span class="m" style="color: #099;">1.1<span class="idiff left right">8.5</span></span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">numpy</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">CPython</span> <span class="m" style="color: #099;">3.7.<span class="idiff left">9</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.8.6</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">3.9.0</span></span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">www</span><span class="p">.</span><span class="n" style="color: #333;">python</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Numpy</span> <span class="m" style="color: #099;">1.1<span class="idiff left right">9.4</span></span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">numpy</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Imagecodecs</span> <span class="m" style="color: #099;">2020.5.30</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">imagecodecs</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="n" style="color: #333;">etc</span><span class="p">.)</span></span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Matplotlib</span> <span class="m" style="color: #099;">3.<span class="idiff left right">2.2</span></span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">matplotlib</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Matplotlib</span> <span class="m" style="color: #099;">3.<span class="idiff left right">3.3</span></span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">matplotlib</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">plotting</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Lxml</span> <span class="m" style="color: #099;">4.<span class="idiff left">5.2</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">github</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">com</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">lxml</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff right">lxml</span></span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Lxml</span> <span class="m" style="color: #099;">4.<span class="idiff left">6.1</span></span><span class="idiff"> </span><span class="p"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">pypi</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">project</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">lxml</span></span><span class="p"><span class="idiff right">/</span>>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">validating</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">printing</span> <span class="n" style="color: #333;">XML</span><span class="p">)</span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Zarr</span> <span class="m" style="color: #099;">2.5.0</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">zarr</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="mosel"> <span class="p">(</span><span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">only</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">opening</span> <span class="n" style="color: #333;">zarr</span> <span class="n" style="color: #333;">storage</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="mosel"> <span class="n" style="color: #333;">Revisions</span></span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="mosel"> <span class="p">---------</span></span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.11.18</span></span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="m" style="color: #099;">4363</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="mosel"> <span class="n" style="color: #333;">Support</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">SEPARATED</span> <span class="n" style="color: #333;">colorspace</span> <span class="p">(#</span><span class="m" style="color: #099;">37</span><span class="p">).</span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">.</span><span class="n" style="color: #333;">deflate</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">available</span><span class="p">.</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">SCN</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">NDPI</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">Z</span> <span class="n" style="color: #333;">dimensions</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">TiffReader</span> <span class="n" style="color: #333;">alias</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="mosel"> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">is_volumetric</span> <span class="n" style="color: #333;">returns</span> <span class="nb" style="color: #0086b3;">True</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ImageDepth</span> <span class="p">></span> <span class="m" style="color: #099;">1.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="mosel"> <span class="n" style="color: #333;">Zarr</span> <span class="n" style="color: #333;">store</span> <span class="n" style="color: #333;">getitem</span> <span class="n" style="color: #333;">returns</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="n" style="color: #333;">instead</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">bytes</span><span class="p">.</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.10.1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="mosel"> <span class="n" style="color: #333;">Formally</span> <span class="n" style="color: #333;">deprecate</span> <span class="n" style="color: #333;">unused</span> <span class="n" style="color: #333;">TiffFile</span> <span class="k" style="font-weight: 600;">parameters</span> <span class="p">(</span><span class="n" style="color: #333;">scikit</span><span class="p">-</span><span class="n" style="color: #333;">image</span> <span class="p">#</span><span class="m" style="color: #099;">4996</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.9.30</span></span>
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<td class="diff-line-num new new_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">pass</span> <span class="n" style="color: #333;">additional</span> <span class="n" style="color: #333;">arguments</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">compression</span> <span class="n" style="color: #333;">codecs</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="mosel"> <span class="n" style="color: #333;">Deprecate</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="n" style="color: #333;">save</span> <span class="k" style="font-weight: 600;">function</span> <span class="p">(</span><span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="mosel"> <span class="n" style="color: #333;">Deprecate</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="n" style="color: #333;">save</span> <span class="n" style="color: #333;">compress</span> <span class="n" style="color: #333;">parameter</span> <span class="p">(</span><span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">compression</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">multifile</span> <span class="n" style="color: #333;">parameter</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">TiffFile</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="n" style="color: #333;">all</span> <span class="n" style="color: #333;">is_flag</span> <span class="n" style="color: #333;">arguments</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">imread</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">byte</span><span class="p">-</span><span class="n" style="color: #333;">swap</span> <span class="n" style="color: #333;">JPEG2000</span><span class="p">,</span> <span class="n" style="color: #333;">WEBP</span><span class="p">,</span> <span class="n" style="color: #333;">PNG</span><span class="p">,</span> <span class="n" style="color: #333;">JPEGXR</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">decode</span><span class="p">.</span></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.9.29</span></span>
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<td class="diff-line-num new new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">produced</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">ScanImage</span> <span class="p">></span> <span class="m" style="color: #099;">2015</span> <span class="p">(#</span><span class="m" style="color: #099;">29</span><span class="p">).</span></span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.9.28</span></span>
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<td class="diff-line-num new new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="mosel"> <span class="n" style="color: #333;">Derive</span> <span class="n" style="color: #333;">ZarrStore</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">MutableMapping</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="mosel"> <span class="n" style="color: #333;">Support</span> <span class="n" style="color: #333;">zero</span> <span class="n" style="color: #333;">shape</span> <span class="n" style="color: #333;">ZarrTiffStore</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">ZarrFileStore</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">ZarrFileStore</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">missing</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="mosel"> <span class="n" style="color: #333;">Cache</span> <span class="n" style="color: #333;">one</span> <span class="n" style="color: #333;">chunk</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">ZarrFileStore</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="mosel"> <span class="n" style="color: #333;">Keep</span> <span class="n" style="color: #333;">track</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">already</span> <span class="n" style="color: #333;">opened</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">FileCache</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="mosel"> <span class="n" style="color: #333;">Change</span> <span class="n" style="color: #333;">parse_filenames</span> <span class="k" style="font-weight: 600;">function</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">return</span> <span class="n" style="color: #333;">zero</span><span class="p">-</span><span class="n" style="color: #333;">based</span> <span class="n" style="color: #333;">indices</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">reopen</span> <span class="n" style="color: #333;">parameter</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">asarray</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">FileSequence</span><span class="p">.</span><span class="n" style="color: #333;">fromfile</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">imread</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.9.22</span></span>
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<td class="diff-line-num new new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">experimental</span> <span class="n" style="color: #333;">zarr</span> <span class="n" style="color: #333;">storage</span> <span class="n" style="color: #333;">interface</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">unused</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">dimension</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">shaped</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="mosel"> <span class="n" style="color: #333;">Move</span> <span class="n" style="color: #333;">reading</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">STK</span> <span class="n" style="color: #333;">planes</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">series</span> <span class="n" style="color: #333;">interface</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="mosel"> <span class="n" style="color: #333;">Always</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">virtual</span> <span class="n" style="color: #333;">frames</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">ScanImage</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">DimensionOrder</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">determine</span> <span class="n" style="color: #333;">axes</span> <span class="n" style="color: #333;">order</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">OmeXml</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="mosel"> <span class="n" style="color: #333;">Enable</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">striped</span> <span class="n" style="color: #333;">volumetric</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="mosel"> <span class="n" style="color: #333;">Keep</span> <span class="n" style="color: #333;">complete</span> <span class="n" style="color: #333;">dataoffsets</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">databytecounts</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TiffFrames</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">full</span> <span class="n" style="color: #333;">size</span> <span class="n" style="color: #333;">tiles</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">Tiffpage</span><span class="p">.</span><span class="n" style="color: #333;">segments</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">is_sgi</span> <span class="n" style="color: #333;">property</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">is_volumetric</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">TiffPageSeries</span><span class="p">.</span><span class="n" style="color: #333;">is_pyramid</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">is_pyramidal</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">TypeError</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">passing</span> <span class="n" style="color: #333;">jpegtables</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">decode</span> <span class="k" style="font-weight: 600;">function</span> <span class="p">(#</span><span class="m" style="color: #099;">25</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.9.3</span></span>
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<td class="diff-line-num new new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">contiguous</span> <span class="n" style="color: #333;">series</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">default</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">SubIFDs</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">F</span><span class="p">-</span><span class="n" style="color: #333;">contiguous</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="p">(#</span><span class="m" style="color: #099;">24</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.8.25</span></span>
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<td class="diff-line-num new new_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">convert</span> <span class="n" style="color: #333;">EPICS</span> <span class="n" style="color: #333;">timeStamp</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">datetime</span> <span class="n" style="color: #333;">object</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">incompletely</span> <span class="n" style="color: #333;">written</span> <span class="n" style="color: #333;">Micro</span><span class="p">-</span><span class="n" style="color: #333;">Manager</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">stack</span> <span class="n" style="color: #333;">header</span> <span class="p">(#</span><span class="m" style="color: #099;">23</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">tag</span> <span class="m" style="color: #099;">51123</span> <span class="n" style="color: #333;">values</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span><span class="n" style="color: #333;">micromanager_metadata</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.8.13</span></span>
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<td class="diff-line-num new new_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">tifffile</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">over</span> <span class="n" style="color: #333;">OME</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span><span class="n" style="color: #333;">series</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">iterable</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">pages</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">compression</span> <span class="p">(#</span><span class="m" style="color: #099;">20</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="mosel"> <span class="n" style="color: #333;">Expand</span> <span class="n" style="color: #333;">error</span> <span class="n" style="color: #333;">checking</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TiffWriter</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tile</span> <span class="n" style="color: #333;">arguments</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.7.24</span></span>
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<td class="diff-line-num new new_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="mosel"> <span class="n" style="color: #333;">Parse</span> <span class="n" style="color: #333;">nested</span> <span class="n" style="color: #333;">OmeXml</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">argument</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">lazy</span> <span class="nf" style="color: #900; font-weight: 600;">load</span> <span class="n" style="color: #333;">TiffFrame</span> <span class="n" style="color: #333;">JPEGTables</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">conditionally</span> <span class="n" style="color: #333;">skipping</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.7.22</span></span>
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<td class="diff-line-num new new_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">auto</span><span class="p">-</span><span class="n" style="color: #333;">enable</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">description</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">passed</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="mosel"> <span class="n" style="color: #333;">Raise</span> <span class="n" style="color: #333;">error</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">empty</span> <span class="n" style="color: #333;">bilevel</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">bilevel</span> <span class="n" style="color: #333;">images</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">page</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">iterable</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">single</span> <span class="n" style="color: #333;">page</span> <span class="n" style="color: #333;">images</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="k" style="font-weight: 600;">function</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">validate</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="mosel"> <span class="n" style="color: #333;">Correct</span> <span class="n" style="color: #333;">Philips</span> <span class="n" style="color: #333;">slide</span> <span class="n" style="color: #333;">width</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">length</span><span class="p">.</span></span>
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70
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<td class="diff-line-num new_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.7.17</span></span>
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71
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<td class="diff-line-num new_line old" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="m" style="color: #099;">3022</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
72
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<td class="diff-line-num new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="mosel"> <span class="n" style="color: #333;">Initial</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
73
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<td class="diff-line-num new_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">samples</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">dimension</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
74
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<td class="diff-line-num new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">modulo</span> <span class="n" style="color: #333;">dimensions</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">multiple</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -104,7 +171,7 @@ Description: Read and write TIFF(r) files</td>
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104
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<td class="diff-line-num new_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">single</span> <span class="n" style="color: #333;">tiles</span> <span class="n" style="color: #333;">larger</span> <span class="n" style="color: #333;">than</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">data</span> <span class="p">(#</span><span class="m" style="color: #099;">3</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
105
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<td class="diff-line-num new_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
172
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="mosel"> <span class="n" style="color: #333;">Always</span> <span class="n" style="color: #333;">store</span> <span class="n" style="color: #333;">ExtraSamples</span> <span class="n" style="color: #333;">values</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tuple</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
106
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<td class="diff-line-num new_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="mosel"> <span class="m" style="color: #099;">2020.5.5</span></span>
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<td class="diff-line-num old old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
107
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<td class="diff-line-num new_line old" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">itera<span class="idiff left right">tor</span></span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num new old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">itera<span class="idiff left right">ble</span></span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
108
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<td class="diff-line-num new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
175
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="k" style="font-weight: 600;">function</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">iterate</span> <span class="n" style="color: #333;">over</span> <span class="n" style="color: #333;">decoded</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TiffPage</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
109
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<td class="diff-line-num new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="n" style="color: #333;">chunks</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">ThreadPoolExecutor</span><span class="p">.</span><span class="n" style="color: #333;">map</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">reduce</span> <span class="n" style="color: #333;">memory</span> <span class="n" style="color: #333;">usage</span><span class="p">.</span></span>
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110
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<td class="diff-line-num new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">invalid</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">too</span> <span class="n" style="color: #333;">many</span> <span class="n" style="color: #333;">strips</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -134,102 +201,6 @@ Description: Read and write TIFF(r) files</td>
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134
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">deprecated</span> <span class="n" style="color: #333;">lzw_decode</span> <span class="n" style="color: #333;">functions</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
135
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<td class="diff-line-num new_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">support</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">2.7</span> <span class="k" style="font-weight: 600;">and</span> <span class="m" style="color: #099;">3.5</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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136
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<td class="diff-line-num new_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.7.26</span></span>
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<td class="diff-line-num old old_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
137
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">infinite</span> <span class="n" style="color: #333;">loop</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">more</span> <span class="n" style="color: #333;">than</span> <span class="n" style="color: #333;">two</span> <span class="n" style="color: #333;">tags</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">same</span> <span class="n" style="color: #333;">code</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">IFD</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
138
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="mosel"> <span class="n" style="color: #333;">Delay</span> <span class="n" style="color: #333;">import</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">logging</span> <span class="n" style="color: #333;">module</span><span class="p">.</span></span>
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139
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.7.20</span></span>
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<td class="diff-line-num old old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
140
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span> <span class="n" style="color: #333;">detection</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">created</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">Imaris</span><span class="p">.</span></span>
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141
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">replace</span> <span class="nb" style="color: #0086b3;">assert</span> <span class="n" style="color: #333;">statements</span><span class="p">.</span></span>
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142
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.7.2</span></span>
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<td class="diff-line-num old old_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
143
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">SampleFormat</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">unsigned</span> <span class="n" style="color: #333;">data</span> <span class="n" style="color: #333;">types</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
144
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="mosel"> <span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">ByteCount</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">values</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">SHORT</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">LONG</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">possible</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
145
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">specify</span> <span class="n" style="color: #333;">axes</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">FileSequence</span> <span class="n" style="color: #333;">pattern</span> <span class="n" style="color: #333;">via</span> <span class="n" style="color: #333;">group</span> <span class="n" style="color: #333;">names</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
146
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">option</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">concurrently</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">FileSequence</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">threads</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
147
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="mosel"> <span class="n" style="color: #333;">Derive</span> <span class="n" style="color: #333;">TiffSequence</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">FileSequence</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
148
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">str</span><span class="p">(</span><span class="n" style="color: #333;">datetime</span><span class="p">.</span><span class="n" style="color: #333;">timedelta</span><span class="p">)</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">format</span> <span class="n" style="color: #333;">Timer</span> <span class="n" style="color: #333;">duration</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
149
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">perf_counter</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">Timer</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">possible</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
150
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.6.18</span></span>
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<td class="diff-line-num old old_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
151
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">planar</span> <span class="n" style="color: #333;">RGB</span> <span class="n" style="color: #333;">ImageJ</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">created</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">Bio</span><span class="p">-</span><span class="n" style="color: #333;">Formats</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
152
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">UUID</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
153
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="mosel"> <span class="n" style="color: #333;">Presume</span> <span class="n" style="color: #333;">LSM</span> <span class="n" style="color: #333;">stores</span> <span class="n" style="color: #333;">uncompressed</span> <span class="n" style="color: #333;">images</span> <span class="n" style="color: #333;">contiguously</span> <span class="n" style="color: #333;">per</span> <span class="n" style="color: #333;">page</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
154
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="mosel"> <span class="n" style="color: #333;">Reformat</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">complex</span> <span class="n" style="color: #333;">expressions</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
155
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.5.30</span></span>
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<td class="diff-line-num old old_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
156
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="mosel"> <span class="n" style="color: #333;">Ignore</span> <span class="n" style="color: #333;">invalid</span> <span class="n" style="color: #333;">frames</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
157
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Set</span> <span class="n" style="color: #333;">default</span> <span class="n" style="color: #333;">subsampling</span> <span class="k" style="font-weight: 600;">to</span> <span class="p">(</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">)</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">RGB</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
158
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">planar</span> <span class="n" style="color: #333;">RGB</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
159
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="mosel"> <span class="n" style="color: #333;">Replace</span> <span class="n" style="color: #333;">buffered_read</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">FileHandle</span><span class="p">.</span><span class="n" style="color: #333;">read_segments</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
160
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Include</span> <span class="n" style="color: #333;">page</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">frame</span> <span class="n" style="color: #333;">numbers</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">exceptions</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">warnings</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
161
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">Timer</span> <span class="n" style="color: #333;">class</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
162
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.5.22</span></span>
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<td class="diff-line-num old old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
163
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">optional</span> <span class="n" style="color: #333;">chroma</span> <span class="n" style="color: #333;">subsampling</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
164
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="mosel"> <span class="n" style="color: #333;">Enable</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">PNG</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="n" style="color: #333;">JPEGXR</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">JPEG2K</span> <span class="n" style="color: #333;">compression</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
165
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">images</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">WebP</span> <span class="n" style="color: #333;">compression</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
166
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="mosel"> <span class="n" style="color: #333;">Improve</span> <span class="n" style="color: #333;">handling</span> <span class="n" style="color: #333;">GeoTIFF</span> <span class="n" style="color: #333;">sparse</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
167
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.3.18</span></span>
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<td class="diff-line-num old old_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
168
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">regression</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">JPEG</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">RGB</span> <span class="n" style="color: #333;">photometrics</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
169
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">corrupted</span> <span class="n" style="color: #333;">but</span> <span class="n" style="color: #333;">unused</span> <span class="n" style="color: #333;">pages</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
170
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="k" style="font-weight: 600;">to</span> <span class="nf" style="color: #900; font-weight: 600;">load</span> <span class="n" style="color: #333;">TiffFrame</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">specifying</span> <span class="n" style="color: #333;">keyframe</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
171
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="mosel"> <span class="n" style="color: #333;">Calculate</span> <span class="n" style="color: #333;">virtual</span> <span class="n" style="color: #333;">TiffFrames</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">ScanImage</span> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">2</span><span class="n" style="color: #333;">GB</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
172
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">property</span> <span class="n" style="color: #333;">is_chroma_subsampled</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">is_subsampled</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
173
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="mosel"> <span class="n" style="color: #333;">Make</span> <span class="n" style="color: #333;">more</span> <span class="n" style="color: #333;">attributes</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">methods</span> <span class="n" style="color: #333;">private</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
174
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.3.8</span></span>
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<td class="diff-line-num old old_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
175
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">MemoryError</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">RowsPerStrip</span> <span class="p">></span> <span class="n" style="color: #333;">ImageLength</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
176
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">SyntaxWarning</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">3.8</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
177
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="mosel"> <span class="n" style="color: #333;">Fail</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">decode</span> <span class="n" style="color: #333;">JPEG</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">planar</span> <span class="n" style="color: #333;">RGB</span> <span class="p">(</span><span class="n" style="color: #333;">tentative</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
178
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="mosel"> <span class="n" style="color: #333;">Separate</span> <span class="k" style="font-weight: 600;">public</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">private</span> <span class="n" style="color: #333;">test</span> <span class="n" style="color: #333;">files</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
179
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="n" style="color: #333;">testing</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">data</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
180
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC180" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.2.22</span></span>
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<td class="diff-line-num old old_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
181
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">-</span><span class="n" style="color: #333;">lite</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">fallback</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
182
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="mosel"> <span class="n" style="color: #333;">Simplify</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">file</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
183
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">TiffFrames</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">reading</span> <span class="n" style="color: #333;">arrays</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">page</span> <span class="n" style="color: #333;">sequences</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
184
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="mosel"> <span class="n" style="color: #333;">Support</span> <span class="n" style="color: #333;">slices</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">iterators</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">TiffPageSeries</span> <span class="n" style="color: #333;">sequence</span> <span class="n" style="color: #333;">interface</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
185
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="mosel"> <span class="n" style="color: #333;">Auto</span><span class="p">-</span><span class="n" style="color: #333;">detect</span> <span class="n" style="color: #333;">uniform</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
186
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">page</span> <span class="n" style="color: #333;">hash</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">determine</span> <span class="n" style="color: #333;">generic</span> <span class="n" style="color: #333;">series</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
187
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="mosel"> <span class="n" style="color: #333;">Turn</span> <span class="n" style="color: #333;">off</span> <span class="n" style="color: #333;">TiffPages</span> <span class="n" style="color: #333;">cache</span> <span class="p">(</span><span class="n" style="color: #333;">tentative</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
188
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="mosel"> <span class="n" style="color: #333;">Pass</span> <span class="n" style="color: #333;">through</span> <span class="n" style="color: #333;">more</span> <span class="k" style="font-weight: 600;">parameters</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imread</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
189
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="mosel"> <span class="n" style="color: #333;">Discontinue</span> <span class="n" style="color: #333;">movie</span> <span class="n" style="color: #333;">parameter</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imread</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">TiffFile</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
190
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="mosel"> <span class="n" style="color: #333;">Discontinue</span> <span class="n" style="color: #333;">bigsize</span> <span class="n" style="color: #333;">parameter</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imwrite</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
191
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="mosel"> <span class="n" style="color: #333;">Raise</span> <span class="n" style="color: #333;">TiffFileError</span> <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">case</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">issues</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">structure</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
192
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span><span class="n" style="color: #333;">ome_metadata</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">XML</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
193
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="mosel"> <span class="n" style="color: #333;">Ignore</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">series</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">last</span> <span class="n" style="color: #333;">dimensions</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">stored</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">pages</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
194
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.2.10</span></span>
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<td class="diff-line-num old old_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
195
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="mosel"> <span class="n" style="color: #333;">Assemble</span> <span class="n" style="color: #333;">IFDs</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">memory</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">speed</span><span class="p">-</span><span class="n" style="color: #333;">up</span> <span class="n" style="color: #333;">writing</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">slow</span> <span class="n" style="color: #333;">media</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
196
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="mosel"> <span class="n" style="color: #333;">Handle</span> <span class="n" style="color: #333;">discontinued</span> <span class="n" style="color: #333;">arguments</span> <span class="n" style="color: #333;">fastij</span><span class="p">,</span> <span class="n" style="color: #333;">multifile_close</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">pages</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
197
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.1.30</span></span>
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<td class="diff-line-num old old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
198
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">black</span> <span class="n" style="color: #333;">background</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imshow</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
199
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">datetime</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">default</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
200
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">SamplesPerPixel</span> <span class="p">></span> <span class="m" style="color: #099;">1.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
201
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC201" class="line" lang="mosel"> <span class="n" style="color: #333;">Allow</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">IFD</span> <span class="n" style="color: #333;">offsets</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">NDPI</span> <span class="p">(</span><span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">4</span><span class="n" style="color: #333;">GB</span> <span class="n" style="color: #333;">still</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">supported</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
202
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.1.4</span></span>
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<td class="diff-line-num old old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
203
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">deflate</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">imagecodecs</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
204
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="mosel"> <span class="m" style="color: #099;">2019.1.1</span></span>
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<td class="diff-line-num old old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
205
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="mosel"> <span class="n" style="color: #333;">Update</span> <span class="n" style="color: #333;">copyright</span> <span class="n" style="color: #333;">year</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
206
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="mosel"> <span class="n" style="color: #333;">Require</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="p">>=</span> <span class="m" style="color: #099;">2018.12.16</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
207
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">tables</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">keyframe</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
208
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="mosel"> <span class="n" style="color: #333;">Enable</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">large</span> <span class="n" style="color: #333;">JPEG</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">NDPI</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
209
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="mosel"> <span class="n" style="color: #333;">Decode</span> <span class="n" style="color: #333;">some</span> <span class="n" style="color: #333;">old</span><span class="p">-</span><span class="n" style="color: #333;">style</span> <span class="n" style="color: #333;">JPEG</span><span class="p">.</span></span>
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210
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="mosel"> <span class="n" style="color: #333;">Reorder</span> <span class="n" style="color: #333;">OME</span> <span class="n" style="color: #333;">channel</span> <span class="n" style="color: #333;">axis</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">match</span> <span class="n" style="color: #333;">PlanarConfiguration</span> <span class="n" style="color: #333;">storage</span><span class="p">.</span></span>
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211
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="mosel"> <span class="n" style="color: #333;">Return</span> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">images</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">contiguous</span> <span class="n" style="color: #333;">arrays</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
212
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="mosel"> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">decode_lzw</span> <span class="n" style="color: #333;">proxy</span> <span class="k" style="font-weight: 600;">function</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">compatibility</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">old</span> <span class="n" style="color: #333;">czifile</span> <span class="n" style="color: #333;">module</span><span class="p">.</span></span>
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213
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<pre style="margin: 0;">-<span id="LC213" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">dedicated</span> <span class="n" style="color: #333;">logger</span><span class="p">.</span></span>
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214
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="mosel"> <span class="m" style="color: #099;">2018.11.28</span></span>
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<td class="diff-line-num old old_line" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
215
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC215" class="line" lang="mosel"> <span class="n" style="color: #333;">Make</span> <span class="n" style="color: #333;">SubIFDs</span> <span class="n" style="color: #333;">accessible</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">TiffPage</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
216
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="mosel"> <span class="n" style="color: #333;">Make</span> <span class="n" style="color: #333;">parsing</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TiffSequence</span> <span class="n" style="color: #333;">axes</span> <span class="n" style="color: #333;">pattern</span> <span class="n" style="color: #333;">optional</span> <span class="p">(</span><span class="n" style="color: #333;">breaking</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
217
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<pre style="margin: 0;">-<span id="LC217" class="line" lang="mosel"> <span class="n" style="color: #333;">Limit</span> <span class="n" style="color: #333;">parsing</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TiffSequence</span> <span class="n" style="color: #333;">axes</span> <span class="n" style="color: #333;">pattern</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">names</span><span class="p">,</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">path</span> <span class="n" style="color: #333;">names</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
218
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">interpolate</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">imshow</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">dimensions</span> <span class="p"><=</span> <span class="m" style="color: #099;">512</span><span class="p">,</span> <span class="k" style="font-weight: 600;">else</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">bilinear</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
219
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">logging</span><span class="p">.</span><span class="n" style="color: #333;">warning</span> <span class="n" style="color: #333;">instead</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">warnings</span><span class="p">.</span><span class="n" style="color: #333;">warn</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">many</span> <span class="n" style="color: #333;">cases</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
220
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">FutureWarning</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">out</span> <span class="p">==</span> <span class="s1" style="color: #d14;">'memmap'</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
221
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="mosel"> <span class="n" style="color: #333;">Adjust</span> <span class="n" style="color: #333;">ZSTD</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">WebP</span> <span class="n" style="color: #333;">compression</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">libtiff</span><span class="p">-</span><span class="m" style="color: #099;">4.0.10</span> <span class="p">(</span><span class="n" style="color: #333;">WIP</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
222
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC222" class="line" lang="mosel"> <span class="n" style="color: #333;">Decode</span> <span class="n" style="color: #333;">old</span><span class="p">-</span><span class="n" style="color: #333;">style</span> <span class="n" style="color: #333;">LZW</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="p">>=</span> <span class="m" style="color: #099;">2018.11.8</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
223
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<pre style="margin: 0;">-<span id="LC223" class="line" lang="mosel"> <span class="n" style="color: #333;">Remove</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">.</span><span class="n" style="color: #333;">qptiff_metadata</span> <span class="p">(</span><span class="n" style="color: #333;">QPI</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">per</span> <span class="n" style="color: #333;">page</span><span class="p">).</span></span>
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<td class="diff-line-num old old_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
224
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">keyword</span> <span class="n" style="color: #333;">arguments</span> <span class="n" style="color: #333;">before</span> <span class="n" style="color: #333;">variable</span> <span class="n" style="color: #333;">positional</span> <span class="n" style="color: #333;">arguments</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
225
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="mosel"> <span class="n" style="color: #333;">Make</span> <span class="n" style="color: #333;">either</span> <span class="n" style="color: #333;">all</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">none</span> <span class="n" style="color: #333;">return</span> <span class="n" style="color: #333;">statements</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">a</span> <span class="k" style="font-weight: 600;">function</span> <span class="n" style="color: #333;">return</span> <span class="n" style="color: #333;">expression</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
226
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">pytest</span> <span class="n" style="color: #333;">parametrize</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">generate</span> <span class="n" style="color: #333;">tests</span><span class="p">.</span></span>
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<td class="diff-line-num old old_line" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
227
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<td class="diff-line-num new_line old" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="mosel"> <span class="n" style="color: #333;">Replace</span> <span class="n" style="color: #333;">test</span> <span class="n" style="color: #333;">classes</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">functions</span><span class="p">.</span></span>
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="mosel"> <span class="m" style="color: #099;">2018.11.6</span></span>
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229
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="mosel"> <span class="n" style="color: #333;">Rename</span> <span class="n" style="color: #333;">imsave</span> <span class="k" style="font-weight: 600;">function</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">imwrite</span><span class="p">.</span></span>
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230
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="mosel"> <span class="n" style="color: #333;">Readd</span> <span class="n" style="color: #333;">Python</span> <span class="n" style="color: #333;">implementations</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">packints</span><span class="p">,</span> <span class="n" style="color: #333;">delta</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">bitorder</span> <span class="n" style="color: #333;">codecs</span><span class="p">.</span></span>
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<pre style="margin: 0;">-<span id="LC231" class="line" lang="mosel"> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">TiffFrame</span><span class="p">.</span><span class="n" style="color: #333;">compression</span> <span class="n" style="color: #333;">AttributeError</span><span class="p">.</span></span>
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232
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="mosel"> <span class="m" style="color: #099;">2018.10.18</span></span>
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233
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204
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="mosel"> <span class="p">...</span></span>
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234
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205
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="mosel"> </span>
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235
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206
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="mosel"> <span class="n" style="color: #333;">Refer</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">CHANGES</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">older</span> <span class="n" style="color: #333;">revisions</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -240,7 +211,7 @@ Description: Read and write TIFF(r) files</td>
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240
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211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="mosel"> </span>
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241
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<td class="diff-line-num new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
212
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="mosel"> <span class="n" style="color: #333;">Tested</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">little</span><span class="p">-</span><span class="n" style="color: #333;">endian</span> <span class="n" style="color: #333;">platforms</span> <span class="n" style="color: #333;">only</span><span class="p">.</span></span>
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242
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213
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="mosel"> </span>
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<td class="diff-line-num old old_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
243
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<td class="diff-line-num new_line old" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC243" class="line" lang="mosel"> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">deprecated</span><span class="p">.</span> <span class="n" style="color: #333;">Python</span> <span class="p"><=</span> <span class="m" style="color: #099;">3.<span class="idiff left right">6</span></span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">no</span> <span class="n" style="color: #333;">longer</span> <span class="n" style="color: #333;">supported</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
214
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="mosel"> <span class="n" style="color: #333;">Python</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">versions</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">deprecated</span><span class="p">.</span> <span class="n" style="color: #333;">Python</span> <span class="p"><=</span> <span class="m" style="color: #099;">3.<span class="idiff left right">7</span></span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">no</span> <span class="n" style="color: #333;">longer</span> <span class="n" style="color: #333;">supported</span><span class="p">.</span></span>
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244
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215
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="mosel"> </span>
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245
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<td class="diff-line-num new_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
216
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="mosel"> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">relies</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">the</span> <span class="p">`</span><span class="n" style="color: #333;">imagecodecs</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">imagecodecs</span><span class="p">/>`</span><span class="n" style="color: #333;">_</span></span>
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246
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<td class="diff-line-num new_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
217
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">encoding</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decoding</span> <span class="n" style="color: #333;">LZW</span><span class="p">,</span> <span class="n" style="color: #333;">JPEG</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">image</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -262,17 +233,24 @@ Description: Read and write TIFF(r) files</td>
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<td class="diff-line-num old_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
262
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<td class="diff-line-num new_line" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
233
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="mosel"> <span class="n" style="color: #333;">tag</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">IFD</span> <span class="n" style="color: #333;">defines</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">position</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">IFDs</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">high</span></span>
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<td class="diff-line-num old_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
263
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<td class="diff-line-num new_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
234
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="mosel"> <span class="n" style="color: #333;">dimensional</span> <span class="n" style="color: #333;">data</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">,</span> <span class="n" style="color: #333;">except</span> <span class="n" style="color: #333;">when</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">XML</span></span>
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264
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<td class="diff-line-num new_line" data-linenumber="235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
235
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="mosel"> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">stored</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">file</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span></span>
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<td class="diff-line-num old old_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
265
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<td class="diff-line-num new_line old" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC265" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">non</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">pyramidal</span></span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span></span>
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<td class="diff-line-num new old_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
236
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
266
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<td class="diff-line-num new_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
237
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">LSM</span><span class="p">*</span> <span class="n" style="color: #333;">stores</span> <span class="n" style="color: #333;">all</span> <span class="n" style="color: #333;">IFDs</span> <span class="n" style="color: #333;">below</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span> <span class="n" style="color: #333;">but</span> <span class="n" style="color: #333;">wraps</span> <span class="n" style="color: #333;">around</span> <span class="m" style="color: #099;">32</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">StripOffsets</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
267
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<td class="diff-line-num new_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="mosel"> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">StripOffsets</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">each</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">position</span> <span class="n" style="color: #333;">require</span> <span class="n" style="color: #333;">separate</span> <span class="n" style="color: #333;">unwrapping</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
268
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<td class="diff-line-num new_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
239
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="mosel"> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">StripByteCounts</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">contains</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">number</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">bytes</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">uncompressed</span></span>
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<td class="diff-line-num old_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
269
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<td class="diff-line-num new_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
240
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="mosel"> <span class="n" style="color: #333;">data</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">large</span> <span class="n" style="color: #333;">LSM</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num new old_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
241
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">STK</span><span class="p">*</span> <span class="p">(</span><span class="n" style="color: #333;">MetaMorph</span> <span class="n" style="color: #333;">Stack</span><span class="p">)</span> <span class="n" style="color: #333;">contains</span> <span class="n" style="color: #333;">additional</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">planes</span> <span class="n" style="color: #333;">stored</span> <span class="n" style="color: #333;">contiguously</span></span>
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<td class="diff-line-num new old_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
242
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="mosel"> <span class="n" style="color: #333;">after</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">data</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">page</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">total</span> <span class="n" style="color: #333;">number</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">planes</span></span>
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<td class="diff-line-num new old_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="mosel"> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">equal</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">counts</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">UIC2tag</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">STK</span> <span class="n" style="color: #333;">files</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
270
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<td class="diff-line-num new_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">NDPI</span><span class="p">*</span> <span class="k" style="font-weight: 600;">uses</span> <span class="n" style="color: #333;">some</span> <span class="m" style="color: #099;">64</span><span class="p">-</span><span class="n" style="color: #333;">bit</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">header</span><span class="p">,</span> <span class="n" style="color: #333;">IFD</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">structures</span><span class="p">.</span></span>
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<td class="diff-line-num old_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
271
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<td class="diff-line-num new_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
245
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="mosel"> <span class="n" style="color: #333;">Tag</span> <span class="n" style="color: #333;">values</span><span class="p">/</span><span class="n" style="color: #333;">offsets</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">corrected</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">high</span> <span class="n" style="color: #333;">bits</span> <span class="n" style="color: #333;">stored</span> <span class="n" style="color: #333;">after</span> <span class="n" style="color: #333;">IFD</span></span>
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<td class="diff-line-num old_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
272
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<td class="diff-line-num new_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
246
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="mosel"> <span class="n" style="color: #333;">structures</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span><span class="m" style="color: #099;">65536</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">missing</span></span>
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<td class="diff-line-num old_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
273
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<td class="diff-line-num new_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
247
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="mosel"> <span class="n" style="color: #333;">restart</span> <span class="n" style="color: #333;">markers</span> <span class="n" style="color: #333;">are</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">readable</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">libjpeg</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">NDPI</span></span>
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<td class="diff-line-num old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
274
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<td class="diff-line-num new_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="mosel"> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">segments</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">restart</span> <span class="n" style="color: #333;">markers</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">dimensions</span> <span class="p">></span><span class="m" style="color: #099;">65536</span> <span class="n" style="color: #333;">can</span></span>
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<td class="diff-line-num old_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
275
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<td class="diff-line-num new_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="mosel"> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">decoded</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">imagecodecs</span> <span class="n" style="color: #333;">library</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">Windows</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">Philips</span><span class="p">*</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">slides</span> <span class="n" style="color: #333;">store</span> <span class="n" style="color: #333;">wrong</span> <span class="n" style="color: #333;">ImageWidth</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ImageLength</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">values</span> <span class="n" style="color: #333;">for</span></span>
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<td class="diff-line-num new new_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
251
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="mosel"> <span class="n" style="color: #333;">tiled</span> <span class="n" style="color: #333;">pages</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">values</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">corrected</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">DICOM_PIXEL_SPACING</span></span>
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<td class="diff-line-num new new_line" data-linenumber="252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
252
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="mosel"> <span class="n" style="color: #333;">attributes</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">XML</span> <span class="n" style="color: #333;">formatted</span> <span class="n" style="color: #333;">description</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">first</span> <span class="n" style="color: #333;">page</span><span class="p">.</span> <span class="n" style="color: #333;">Tifffile</span> <span class="n" style="color: #333;">can</span></span>
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<td class="diff-line-num new new_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
253
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="mosel"> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">Philips</span> <span class="n" style="color: #333;">slides</span><span class="p">.</span></span>
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276
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<td class="diff-line-num new_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
254
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="mosel"> <span class="p">*</span> <span class="p">*</span><span class="n" style="color: #333;">ScanImage</span><span class="p">*</span> <span class="n" style="color: #333;">optionally</span> <span class="n" style="color: #333;">allows</span> <span class="n" style="color: #333;">corrupt</span> <span class="n" style="color: #333;">non</span><span class="p">-</span><span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">files</span> <span class="p">></span> <span class="m" style="color: #099;">2</span> <span class="n" style="color: #333;">GB</span><span class="p">.</span> <span class="n" style="color: #333;">The</span> <span class="n" style="color: #333;">values</span></span>
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<td class="diff-line-num old_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
277
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<td class="diff-line-num new_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
255
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">StripOffsets</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">StripByteCounts</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">recovered</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">constant</span></span>
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<td class="diff-line-num old_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
278
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<td class="diff-line-num new_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
256
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="mosel"> <span class="n" style="color: #333;">differences</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">offsets</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">IFD</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tag</span> <span class="n" style="color: #333;">values</span> <span class="n" style="color: #333;">throughout</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">file</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -299,6 +277,7 @@ Description: Read and write TIFF(r) files</td>
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299
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277
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">ScanImageTiffReaderPython</span></span>
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300
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<td class="diff-line-num new_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
278
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="mosel"> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">gitlab</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">vidriotech</span><span class="p">/</span><span class="n" style="color: #333;">scanimagetiffreader</span><span class="p">-</span><span class="n" style="color: #333;">python</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<td class="diff-line-num old_line" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
301
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<td class="diff-line-num new_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
279
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">bigtiff</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">bigtiff</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<td class="diff-line-num new old_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">Large</span> <span class="n" style="color: #333;">Image</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">girder</span><span class="p">/</span><span class="n" style="color: #333;">large_image</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<td class="diff-line-num old_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
302
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<td class="diff-line-num new_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
281
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="mosel"> </span>
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303
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<td class="diff-line-num new_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
282
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="mosel"> <span class="n" style="color: #333;">Some</span> <span class="n" style="color: #333;">libraries</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">tifffile</span> <span class="k" style="font-weight: 600;">to</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">:</span></span>
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<td class="diff-line-num old_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
304
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<td class="diff-line-num new_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
283
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="mosel"> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -308,6 +287,10 @@ Description: Read and write TIFF(r) files</td>
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<td class="diff-line-num old_line" data-linenumber="308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
308
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<td class="diff-line-num new_line" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
287
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="mosel"> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">pypi</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">project</span><span class="p">/</span><span class="n" style="color: #333;">aicsimageio</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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<td class="diff-line-num old_line" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
309
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<td class="diff-line-num new_line" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
288
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">xtiff</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">BodenmillerGroup</span><span class="p">/</span><span class="n" style="color: #333;">xtiff</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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310
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289
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<pre style="margin: 0;"> <span id="LC289" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="mosel"> <span class="n" style="color: #333;">Other</span> <span class="n" style="color: #333;">tools</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">inspecting</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">manipulating</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span><span class="p">:</span></span>
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291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="mosel"> <span class="p">*</span> <span class="p">`</span><span class="n" style="color: #333;">tifftools</span> <span class="p"><</span><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">DigitalSlideArchive</span><span class="p">/</span><span class="n" style="color: #333;">tifftools</span><span class="p">>`</span><span class="n" style="color: #333;">_</span></span>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="mosel"> </span>
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311
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<td class="diff-line-num new_line" data-linenumber="294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
294
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="mosel"> <span class="n" style="color: #333;">References</span></span>
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312
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<td class="diff-line-num new_line" data-linenumber="295" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
295
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="mosel"> <span class="p">----------</span></span>
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313
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<td class="diff-line-num new_line" data-linenumber="296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
296
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">TIFF</span> <span class="m" style="color: #099;">6.0</span> <span class="n" style="color: #333;">Specification</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">Supplements</span><span class="p">.</span> <span class="n" style="color: #333;">Adobe</span> <span class="n" style="color: #333;">Systems</span> <span class="n" style="color: #333;">Incorporated</span><span class="p">.</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="373" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="356" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -373,7 +356,7 @@ Description: Read and write TIFF(r) files</td>
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<td class="diff-line-num old_line" data-linenumber="373" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
373
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<td class="diff-line-num new_line" data-linenumber="356" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
356
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<pre style="margin: 0;"> <span id="LC356" class="line" lang="mosel"> <span class="n" style="color: #333;">Save</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">floating</span><span class="p">-</span><span class="n" style="color: #333;">point</span> <span class="k" style="font-weight: 600;">array</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">metadata</span><span class="p">,</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">zlib</span> <span class="n" style="color: #333;">compression</span><span class="p">:</span></span>
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374
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357
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<pre style="margin: 0;"> <span id="LC357" class="line" lang="mosel"> </span>
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375
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<td class="diff-line-num new_line" data-linenumber="358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
358
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<pre style="margin: 0;"> <span id="LC358" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">,</span> <span class="m" style="color: #099;">301</span><span class="p">,</span> <span class="m" style="color: #099;">219</span><span class="p">).</span><span class="n" style="color: #333;">astype</span><span class="p">(</span><span class="s1" style="color: #d14;">'float32'</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="376" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
376
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<td class="diff-line-num new_line old" data-linenumber="359" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC376" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">compress</span><span class="p"><span class="idiff left">=</span></span><span class="m" style="color: #099;"><span class="idiff right">6</span></span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="p">={</span><span class="s1" style="color: #d14;">'axes'</span><span class="p">:</span> <span class="s1" style="color: #d14;">'TZCYX'</span><span class="p">})</span></span>
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<td class="diff-line-num new new_line" data-linenumber="359" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
359
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">compress<span class="idiff left">ion</span></span><span class="p"><span class="idiff">=</span></span><span class="s1" style="color: #d14;"><span class="idiff right">'zlib'</span></span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="p">={</span><span class="s1" style="color: #d14;">'axes'</span><span class="p">:</span> <span class="s1" style="color: #d14;">'TZCYX'</span><span class="p">})</span></span>
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377
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<td class="diff-line-num new_line" data-linenumber="360" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
360
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<pre style="margin: 0;"> <span id="LC360" class="line" lang="mosel"> </span>
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378
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<td class="diff-line-num new_line" data-linenumber="361" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
361
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<pre style="margin: 0;"> <span id="LC361" class="line" lang="mosel"> <span class="n" style="color: #333;">Save</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">volume</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">xyz</span> <span class="n" style="color: #333;">voxel</span> <span class="n" style="color: #333;">size</span> <span class="m" style="color: #099;">2.6755</span><span class="n" style="color: #333;">x2</span><span class="m" style="color: #099;">.6755</span><span class="n" style="color: #333;">x3</span><span class="m" style="color: #099;">.9474</span> <span class="n" style="color: #333;">micron</span><span class="p">^</span><span class="m" style="color: #099;">3</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">ImageJ</span></span>
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379
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<td class="diff-line-num new_line" data-linenumber="362" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
362
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<pre style="margin: 0;"> <span id="LC362" class="line" lang="mosel"> <span class="n" style="color: #333;">formatted</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="449" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="432" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -449,12 +432,19 @@ Description: Read and write TIFF(r) files</td>
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449
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432
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<pre style="margin: 0;"> <span id="LC432" class="line" lang="mosel"> <span class="m" style="color: #099;">1.0</span></span>
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450
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<td class="diff-line-num new_line" data-linenumber="433" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
433
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<pre style="margin: 0;"> <span id="LC433" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">del</span> <span class="n" style="color: #333;">memmap_image</span></span>
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451
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434
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<pre style="margin: 0;"> <span id="LC434" class="line" lang="mosel"> </span>
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452
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<pre style="margin: 0;">-<span id="LC452" class="line" lang="mosel"> <span class="n" style="color: #333;">Successively</span> <span class="n" style="color: #333;">append</span> <span class="n" style="color: #333;">images</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">which</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">exceed</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">:</span></span>
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435
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<pre style="margin: 0;">+<span id="LC435" class="line" lang="mosel"> <span class="n" style="color: #333;">Successively</span> <span class="nb" style="color: #0086b3;">write</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">frames</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">one</span> <span class="n" style="color: #333;">contiguous</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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436
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="mosel"> </span>
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437
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">30</span><span class="p">,</span> <span class="m" style="color: #099;">301</span><span class="p">,</span> <span class="m" style="color: #099;">219</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
438
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<pre style="margin: 0;">+<span id="LC438" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="439" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
439
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">frame</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">data</span><span class="p">:</span></span>
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440
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">(</span><span class="n" style="color: #333;">frame</span><span class="p">,</span> <span class="n" style="color: #333;">contiguous</span><span class="p">=</span><span class="nb" style="color: #0086b3;">True</span><span class="p">)</span></span>
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441
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="mosel"> </span>
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442
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<pre style="margin: 0;">+<span id="LC442" class="line" lang="mosel"> <span class="n" style="color: #333;">Successively</span> <span class="n" style="color: #333;">append</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">BigTIFF</span> <span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">which</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">exceed</span> <span class="m" style="color: #099;">4</span> <span class="n" style="color: #333;">GB</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC443" class="line" lang="mosel"> </span>
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444
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<pre style="margin: 0;"> <span id="LC444" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">,</span> <span class="m" style="color: #099;">301</span><span class="p">,</span> <span class="m" style="color: #099;">219</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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455
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445
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<pre style="margin: 0;"> <span id="LC445" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">bigtiff</span><span class="p">=</span><span class="nb" style="color: #0086b3;">True</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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456
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446
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<pre style="margin: 0;"> <span id="LC446" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">i</span> <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">range</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]):</span></span>
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457
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<pre style="margin: 0;">-<span id="LC457" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;"><span class="idiff left">save</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data</span></span><span class="p"><span class="idiff">[</span></span><span class="n" style="color: #333;"><span class="idiff">i</span></span><span class="p"><span class="idiff">],</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">compress</span></span><span class="p"><span class="idiff">=</span></span><span class="m" style="color: #099;"><span class="idiff right">6</span></span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'minisblack'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="447" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
447
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<pre style="margin: 0;">+<span id="LC447" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;"><span class="idiff left">write</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data</span></span><span class="p"><span class="idiff">[</span></span><span class="n" style="color: #333;"><span class="idiff">i</span></span><span class="p"><span class="idiff right">]</span>,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'minisblack'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC448" class="line" lang="mosel"> </span>
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459
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<pre style="margin: 0;"> <span id="LC449" class="line" lang="mosel"> <span class="n" style="color: #333;">Append</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">image</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">existing</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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460
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<pre style="margin: 0;"> <span id="LC450" class="line" lang="mosel"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -472,31 +462,18 @@ Description: Read and write TIFF(r) files</td>
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<pre style="margin: 0;"> <span id="LC462" class="line" lang="mosel"> <span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">two</span> <span class="n" style="color: #333;">numpy</span> <span class="n" style="color: #333;">arrays</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">series</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC463" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC464" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data0</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">255</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;">32</span><span class="p">,</span> <span class="m" style="color: #099;">32</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint8'</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="475" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
475
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<pre style="margin: 0;">-<span id="LC475" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data1</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">1023</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;"><span class="idiff left right">5</span></span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint16'</span><span class="p">)</span></span>
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476
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<pre style="margin: 0;">-<span id="LC476" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ome</span></span><span class="p"><span class="idiff">=</span></span><span class="nb" style="color: #0086b3;"><span class="idiff right">True</span></span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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477
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<pre style="margin: 0;">-<span id="LC477" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;"><span class="idiff left">save</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">compress</span></span><span class="p"><span class="idiff">=</span></span><span class="m" style="color: #099;"><span class="idiff right">6</span></span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'rgb'</span><span class="p">)</span></span>
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478
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<td class="diff-line-num new_line old" data-linenumber="465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC478" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;"><span class="idiff left">save</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data1</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">photometric</span></span><span class="p"><span class="idiff">=</span></span><span class="s1" style="color: #d14;"><span class="idiff">'minisblack'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">contiguous</span></span><span class="p"><span class="idiff">=</span></span><span class="nb" style="color: #0086b3;"><span class="idiff right">False</span></span><span class="p">,</span></span>
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479
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<td class="diff-line-num new_line old" data-linenumber="465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC479" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">metadata</span><span class="p">=</span><span class="n" style="color: #333;"><span class="idiff left">dict</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">axes</span></span><span class="p"><span class="idiff">=</span></span><span class="s1" style="color: #d14;"><span class="idiff">'ZYX'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">SignificantBits</span></span><span class="p"><span class="idiff right">=</span></span><span class="m" style="color: #099;">10</span><span class="p">,</span></span>
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<td class="diff-line-num new_line old" data-linenumber="465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC480" class="line" lang="mosel"> <span class="p">...</span> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">PositionZ</span></span><span class="p"><span class="idiff">=[</span></span><span class="m" style="color: #099;"><span class="idiff">0.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">1.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">4.0</span></span><span class="p"><span class="idiff right">])</span>)</span></span>
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data1</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">randint</span><span class="p">(</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">1023</span><span class="p">,</span> <span class="p">(</span><span class="m" style="color: #099;"><span class="idiff left right">4</span></span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="s1" style="color: #d14;">'uint16'</span><span class="p">)</span></span>
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466
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="467" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
467
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<pre style="margin: 0;">+<span id="LC467" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;"><span class="idiff left">write</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff right">data0</span></span><span class="p">,</span> <span class="n" style="color: #333;">photometric</span><span class="p">=</span><span class="s1" style="color: #d14;">'rgb'</span><span class="p">)</span></span>
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468
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<pre style="margin: 0;">+<span id="LC468" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;"><span class="idiff left">write</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">data1</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">photometric</span></span><span class="p"><span class="idiff">=</span></span><span class="s1" style="color: #d14;"><span class="idiff right">'minisblack'</span></span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="469" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
469
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">metadata</span><span class="p">=<span class="idiff left">{</span></span><span class="s1" style="color: #d14;"><span class="idiff">'axes'</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="s1" style="color: #d14;"><span class="idiff">'ZYX'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="s1" style="color: #d14;"><span class="idiff">'SignificantBits'</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff right"> </span><span class="m" style="color: #099;">10</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="mosel"> <span class="p">...</span> <span class="s1" style="color: #d14;"><span class="idiff left">'Plane'</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="p"><span class="idiff">{</span></span><span class="s1" style="color: #d14;"><span class="idiff">'PositionZ'</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="p"><span class="idiff">[</span></span><span class="m" style="color: #099;"><span class="idiff">0.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">1.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2.0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">3.0</span></span><span class="p"><span class="idiff right">]}}</span>)</span></span>
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<pre style="margin: 0;"> <span id="LC471" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC472" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">second</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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483
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473
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<pre style="margin: 0;"> <span id="LC473" class="line" lang="mosel"> </span>
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<pre style="margin: 0;"> <span id="LC474" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">series1</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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485
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<pre style="margin: 0;"> <span id="LC475" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">series1</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">-<span id="LC486" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">5</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">)</span></span>
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487
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<pre style="margin: 0;">-<span id="LC487" class="line" lang="mosel"> </span>
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488
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<pre style="margin: 0;">-<span id="LC488" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">stack</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">name</span> <span class="n" style="color: #333;">pattern</span><span class="p">:</span></span>
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489
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<pre style="margin: 0;">-<span id="LC489" class="line" lang="mosel"> </span>
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490
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<pre style="margin: 0;">-<span id="LC490" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001T001.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">))</span></span>
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491
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<td class="diff-line-num new_line old" data-linenumber="476" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC491" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001T002.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">))</span></span>
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492
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<td class="diff-line-num new_line old" data-linenumber="476" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC492" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span> <span class="p">=</span> <span class="n" style="color: #333;">TiffSequence</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001*.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">pattern</span><span class="p">=</span><span class="s1" style="color: #d14;">'axes'</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC493" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">-<span id="LC494" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC495" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">axes</span></span>
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496
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<pre style="margin: 0;">-<span id="LC496" class="line" lang="mosel"> <span class="s1" style="color: #d14;">'CT'</span></span>
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<pre style="margin: 0;">-<span id="LC497" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC498" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">-<span id="LC499" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC476" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">)</span></span>
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477
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<pre style="margin: 0;"> <span id="LC477" class="line" lang="mosel"> </span>
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478
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<pre style="margin: 0;"> <span id="LC478" class="line" lang="mosel"> <span class="n" style="color: #333;">Create</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">generator</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">tiles</span><span class="p">:</span></span>
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479
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<pre style="margin: 0;"> <span id="LC479" class="line" lang="mosel"> </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -505,38 +482,67 @@ Description: Read and write TIFF(r) files</td>
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505
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482
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<pre style="margin: 0;"> <span id="LC482" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">i</span> <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">range</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]):</span> <span class="n" style="color: #333;">yield</span> <span class="n" style="color: #333;">data</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span></span>
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506
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483
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<pre style="margin: 0;"> <span id="LC483" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">tiles</span><span class="p">(),</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint16'</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span><span class="p">=(</span><span class="m" style="color: #099;">48</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">),</span> <span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">16</span><span class="p">,</span> <span class="m" style="color: #099;">16</span><span class="p">))</span></span>
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507
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484
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<pre style="margin: 0;"> <span id="LC484" class="line" lang="mosel"> </span>
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508
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<td class="diff-line-num new_line old" data-linenumber="485" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC508" class="line" lang="mosel"> <span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">resolution</span><span class="p">,</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compression</span><span class="p">:</span></span>
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<td class="diff-line-num new old_line" data-linenumber="509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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485
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<pre style="margin: 0;">+<span id="LC485" class="line" lang="mosel"> <span class="n" style="color: #333;">Write</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">multi</span><span class="p">-</span><span class="n" style="color: #333;">resolution</span><span class="p">,</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">using</span> <span class="n" style="color: #333;">JPEG</span></span>
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486
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="mosel"> <span class="n" style="color: #333;">compression</span><span class="p">.</span> <span class="n" style="color: #333;">Sub</span><span class="p">-</span><span class="n" style="color: #333;">resolution</span> <span class="n" style="color: #333;">images</span> <span class="n" style="color: #333;">are</span> <span class="n" style="color: #333;">written</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">SubIFDs</span><span class="p">:</span></span>
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509
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487
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<pre style="margin: 0;"> <span id="LC487" class="line" lang="mosel"> </span>
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510
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488
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<pre style="margin: 0;"> <span id="LC488" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="n" style="color: #333;">arange</span><span class="p">(</span><span class="m" style="color: #099;">1024</span><span class="p">*</span><span class="m" style="color: #099;">1024</span><span class="p">*</span><span class="m" style="color: #099;">3</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="p">=</span><span class="s1" style="color: #d14;">'uint8'</span><span class="p">).</span><span class="n" style="color: #333;">reshape</span><span class="p">((</span><span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">))</span></span>
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511
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC511" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
512
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<pre style="margin: 0;">-<span id="LC512" class="line" lang="mosel"> <span class="p">...</span> <span class="k" style="font-weight: 600;">options</span> <span class="p">=</span> <span class="n" style="color: #333;">dict</span><span class="p">(</span><span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="n" style="color: #333;">compress</span><span class="p">=</span><span class="s1" style="color: #d14;">'jpeg'</span><span class="p">,</span> <span class="n" style="color: #333;">metadata</span><span class="p">=</span><span class="n" style="color: #333;">None</span><span class="p">)</span></span>
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513
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<pre style="margin: 0;">-<span id="LC513" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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514
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<pre style="margin: 0;">-<span id="LC514" class="line" lang="mosel"> <span class="p">...</span> <span class="p">#</span> <span class="n" style="color: #333;">save</span> <span class="n" style="color: #333;">pyramid</span> <span class="n" style="color: #333;">levels</span><span class="p">.</span> <span class="k" style="font-weight: 600;">In</span> <span class="n" style="color: #333;">production</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">resampling</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">generate</span> <span class="n" style="color: #333;">levels</span><span class="c1" style="color: #998; font-style: italic;">!</span></span>
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<pre style="margin: 0;">-<span id="LC515" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC516" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">save</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">4</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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517
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<pre style="margin: 0;">-<span id="LC517" class="line" lang="mosel"> </span>
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518
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC518" class="line" lang="mosel"> <span class="n" style="color: #333;">Access</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">levels</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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519
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<pre style="margin: 0;">-<span id="LC519" class="line" lang="mosel"> </span>
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520
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC520" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span></span>
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521
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC521" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">level</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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522
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<td class="diff-line-num new_line old" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC522" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
489
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffWriter</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="490" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
490
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="mosel"> <span class="p">...</span> <span class="k" style="font-weight: 600;">options</span> <span class="p">=</span> <span class="n" style="color: #333;">dict</span><span class="p">(</span><span class="n" style="color: #333;">tile</span><span class="p">=(</span><span class="m" style="color: #099;">256</span><span class="p">,</span> <span class="m" style="color: #099;">256</span><span class="p">),</span> <span class="n" style="color: #333;">compression</span><span class="p">=</span><span class="s1" style="color: #d14;">'jpeg'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="491" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
491
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">subifds</span><span class="p">=</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="492" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
492
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<pre style="margin: 0;">+<span id="LC492" class="line" lang="mosel"> <span class="p">...</span> <span class="p">#</span> <span class="n" style="color: #333;">save</span> <span class="n" style="color: #333;">pyramid</span> <span class="n" style="color: #333;">levels</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">two</span> <span class="n" style="color: #333;">subifds</span></span>
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<td class="diff-line-num new new_line" data-linenumber="493" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
493
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<pre style="margin: 0;">+<span id="LC493" class="line" lang="mosel"> <span class="p">...</span> <span class="p">#</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">production</span> <span class="n" style="color: #333;">use</span> <span class="n" style="color: #333;">resampling</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">generate</span> <span class="n" style="color: #333;">sub</span><span class="p">-</span><span class="n" style="color: #333;">resolutions</span><span class="c1" style="color: #998; font-style: italic;">!</span></span>
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<td class="diff-line-num new new_line" data-linenumber="494" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
494
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<pre style="margin: 0;">+<span id="LC494" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="495" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
495
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<pre style="margin: 0;">+<span id="LC495" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="nb" style="color: #0086b3;">write</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">[::</span><span class="m" style="color: #099;">4</span><span class="p">,</span> <span class="p">::</span><span class="m" style="color: #099;">4</span><span class="p">],</span> <span class="n" style="color: #333;">subfiletype</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="p">**</span><span class="k" style="font-weight: 600;">options</span><span class="p">)</span></span>
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496
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<pre style="margin: 0;">+<span id="LC496" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="497" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
497
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<pre style="margin: 0;">+<span id="LC497" class="line" lang="mosel"> <span class="n" style="color: #333;">Access</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">levels</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">OME</span><span class="p">-</span><span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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498
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<pre style="margin: 0;">+<span id="LC498" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="499" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
499
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<pre style="margin: 0;">+<span id="LC499" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="500" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
500
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<pre style="margin: 0;">+<span id="LC500" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">series</span><span class="p">=</span><span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">level</span><span class="p">=</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="501" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
501
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<pre style="margin: 0;">+<span id="LC501" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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523
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502
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<pre style="margin: 0;"> <span id="LC502" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">baseimage</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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524
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<td class="diff-line-num new_line" data-linenumber="503" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
503
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<pre style="margin: 0;"> <span id="LC503" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">second_level</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">series</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">levels</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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525
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<td class="diff-line-num new_line" data-linenumber="504" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
504
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<pre style="margin: 0;"> <span id="LC504" class="line" lang="mosel"> </span>
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<td class="diff-line-num old_line" data-linenumber="526" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
526
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<td class="diff-line-num new_line" data-linenumber="505" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
505
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<pre style="margin: 0;"> <span id="LC505" class="line" lang="mosel"> <span class="n" style="color: #333;">Iterate</span> <span class="n" style="color: #333;">over</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">decode</span> <span class="n" style="color: #333;">single</span> <span class="n" style="color: #333;">JPEG</span> <span class="n" style="color: #333;">compressed</span> <span class="n" style="color: #333;">tiles</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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527
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<td class="diff-line-num new_line" data-linenumber="506" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
506
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<pre style="margin: 0;"> <span id="LC506" class="line" lang="mosel"> </span>
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528
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<td class="diff-line-num new_line old" data-linenumber="507" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC528" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num new old_line" data-linenumber="529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="507" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
507
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<pre style="margin: 0;">+<span id="LC507" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">TiffFile</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.<span class="idiff left right">ome.</span>tif'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">tif</span><span class="p">:</span></span>
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<td class="diff-line-num old_line" data-linenumber="529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
529
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<td class="diff-line-num new_line" data-linenumber="508" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
508
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<pre style="margin: 0;"> <span id="LC508" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">fh</span> <span class="p">=</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">filehandle</span></span>
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<td class="diff-line-num old_line" data-linenumber="530" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
530
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<td class="diff-line-num new_line" data-linenumber="509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
509
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<pre style="margin: 0;"> <span id="LC509" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">page</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">tif</span><span class="p">.</span><span class="n" style="color: #333;">pages</span><span class="p">:</span></span>
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531
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<td class="diff-line-num new_line old" data-linenumber="510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC531" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">jpegtables</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">tags</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s1" style="color: #d14;">'JPEGTables'</span><span class="p">,</span> <span class="n" style="color: #333;">None</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="532" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
532
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<td class="diff-line-num new_line old" data-linenumber="510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC532" class="line" lang="mosel"> <span class="p">...</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">jpegtables</span> <span class="n" style="color: #333;">is</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">None</span><span class="p">:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="533" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
533
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<td class="diff-line-num new_line old" data-linenumber="510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC533" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">jpegtables</span> <span class="p">=</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">.</span><span class="n" style="color: #333;">value</span></span>
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<td class="diff-line-num old_line" data-linenumber="534" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
534
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<td class="diff-line-num new_line" data-linenumber="510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
510
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<pre style="margin: 0;"> <span id="LC510" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">offset</span><span class="p">,</span> <span class="n" style="color: #333;">bytecount</span><span class="p">)</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">enumerate</span><span class="p">(</span></span>
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<td class="diff-line-num old_line" data-linenumber="535" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
535
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<td class="diff-line-num new_line" data-linenumber="511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
511
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC511" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">zip</span><span class="p">(</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">dataoffsets</span><span class="p">,</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">databytecounts</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="536" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
536
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<td class="diff-line-num new_line" data-linenumber="512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
512
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<pre style="margin: 0;"> <span id="LC512" class="line" lang="mosel"> <span class="p">...</span> <span class="p">):</span></span>
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537
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<td class="diff-line-num new_line" data-linenumber="513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
513
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<pre style="margin: 0;"> <span id="LC513" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="n" style="color: #333;">seek</span><span class="p">(</span><span class="n" style="color: #333;">offset</span><span class="p">)</span></span>
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538
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514
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<pre style="margin: 0;"> <span id="LC514" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">fh</span><span class="p">.</span><span class="nb" style="color: #0086b3;">read</span><span class="p">(</span><span class="n" style="color: #333;">bytecount</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="539" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
539
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<td class="diff-line-num new_line old" data-linenumber="515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC539" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tile</span><span class="p">,</span> <span class="n" style="color: #333;">indices</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">decode</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">tile</span><span class="p">,</span> <span class="n" style="color: #333;">indices</span><span class="p">,</span> <span class="n" style="color: #333;">shape</span> <span class="p">=</span> <span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">decode</span><span class="p">(</span></span>
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516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="p">,</span> <span class="n" style="color: #333;">jpegtables</span><span class="p">=</span><span class="n" style="color: #333;">page</span><span class="p">.</span><span class="n" style="color: #333;">jpegtables</span></span>
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517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="mosel"> <span class="p">...</span> <span class="p">)</span></span>
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518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="519" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="mosel"> <span class="n" style="color: #333;">Use</span> <span class="n" style="color: #333;">zarr</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">access</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">tiled</span><span class="p">,</span> <span class="n" style="color: #333;">pyramidal</span> <span class="n" style="color: #333;">images</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">file</span><span class="p">:</span></span>
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520
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
521
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">import</span> <span class="n" style="color: #333;">zarr</span></span>
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<td class="diff-line-num new new_line" data-linenumber="522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
522
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">store</span> <span class="p">=</span> <span class="n" style="color: #333;">imread</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp.ome.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">aszarr</span><span class="p">=</span><span class="nb" style="color: #0086b3;">True</span><span class="p">)</span></span>
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523
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">z</span> <span class="p">=</span> <span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">open</span><span class="p">(</span><span class="n" style="color: #333;">store</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">=</span><span class="s1" style="color: #d14;">'r'</span><span class="p">)</span></span>
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524
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">z</span></span>
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<td class="diff-line-num new new_line" data-linenumber="525" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
525
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="mosel"> <span class="p"><</span><span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">hierarchy</span><span class="p">.</span><span class="n" style="color: #333;">Group</span> <span class="s1" style="color: #d14;">'/'</span> <span class="nb" style="color: #0086b3;">read</span><span class="p">-</span><span class="n" style="color: #333;">only</span><span class="p">></span></span>
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<td class="diff-line-num new new_line" data-linenumber="526" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
526
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">z</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span> <span class="p">#</span> <span class="n" style="color: #333;">base</span> <span class="n" style="color: #333;">layer</span></span>
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527
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="mosel"> <span class="p"><</span><span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">core</span><span class="p">.</span><span class="k" style="font-weight: 600;">Array</span> <span class="s1" style="color: #d14;">'/0'</span> <span class="p">(</span><span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">1024</span><span class="p">,</span> <span class="m" style="color: #099;">3</span><span class="p">)</span> <span class="n" style="color: #333;">uint8</span> <span class="nb" style="color: #0086b3;">read</span><span class="p">-</span><span class="n" style="color: #333;">only</span><span class="p">></span></span>
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<td class="diff-line-num new new_line" data-linenumber="528" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
528
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">store</span><span class="p">.</span><span class="n" style="color: #333;">close</span><span class="p">()</span></span>
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529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="530" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
530
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="mosel"> <span class="n" style="color: #333;">Read</span> <span class="n" style="color: #333;">an</span> <span class="n" style="color: #333;">image</span> <span class="n" style="color: #333;">stack</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">series</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">TIFF</span> <span class="n" style="color: #333;">files</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">file</span> <span class="n" style="color: #333;">name</span> <span class="n" style="color: #333;">pattern</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
531
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="mosel"> </span>
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<td class="diff-line-num new new_line" data-linenumber="532" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
532
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001T001.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="533" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
533
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">imwrite</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001T002.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">numpy</span><span class="p">.</span><span class="nb" style="color: #0086b3;">random</span><span class="p">.</span><span class="n" style="color: #333;">rand</span><span class="p">(</span><span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="534" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
534
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span> <span class="p">=</span> <span class="n" style="color: #333;">TiffSequence</span><span class="p">(</span><span class="s1" style="color: #d14;">'temp_C001*.tif'</span><span class="p">,</span> <span class="n" style="color: #333;">pattern</span><span class="p">=</span><span class="s1" style="color: #d14;">'axes'</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC537" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">axes</span></span>
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="mosel"> <span class="s1" style="color: #d14;">'CT'</span></span>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span> <span class="p">=</span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">asarray</span><span class="p">()</span></span>
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540
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">shape</span></span>
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541
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<pre style="margin: 0;">+<span id="LC541" class="line" lang="mosel"> <span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">)</span></span>
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542
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<pre style="margin: 0;">+<span id="LC542" class="line" lang="mosel"> <span class="p">>>></span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">aszarr</span><span class="p">()</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">store</span><span class="p">:</span></span>
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543
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<pre style="margin: 0;">+<span id="LC543" class="line" lang="mosel"> <span class="p">...</span> <span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">open</span><span class="p">(</span><span class="n" style="color: #333;">store</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">=</span><span class="s1" style="color: #d14;">'r'</span><span class="p">)</span></span>
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544
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<pre style="margin: 0;">+<span id="LC544" class="line" lang="mosel"> <span class="p"><</span><span class="n" style="color: #333;">zarr</span><span class="p">.</span><span class="n" style="color: #333;">core</span><span class="p">.</span><span class="k" style="font-weight: 600;">Array</span> <span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="m" style="color: #099;">2</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">,</span> <span class="m" style="color: #099;">64</span><span class="p">)</span> <span class="n" style="color: #333;">float64</span> <span class="nb" style="color: #0086b3;">read</span><span class="p">-</span><span class="n" style="color: #333;">only</span><span class="p">></span></span>
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<pre style="margin: 0;">+<span id="LC545" class="line" lang="mosel"> <span class="p">>>></span> <span class="n" style="color: #333;">image_sequence</span><span class="p">.</span><span class="n" style="color: #333;">close</span><span class="p">()</span></span>
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546
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<pre style="margin: 0;"> <span id="LC546" class="line" lang="mosel"> </span>
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547
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<pre style="margin: 0;"> <span id="LC547" class="line" lang="mosel"><span class="n" style="color: #333;">Platform</span><span class="p">:</span> <span class="n" style="color: #333;">any</span></span>
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548
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<pre style="margin: 0;"> <span id="LC548" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Development</span> <span class="n" style="color: #333;">Status</span> <span class="p">::</span> <span class="m" style="color: #099;">4</span> <span class="p">-</span> <span class="n" style="color: #333;">Beta</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -548,5 +554,5 @@ Classifier: Programming Language :: Python :: 3 :: Only</td>
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554
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<pre style="margin: 0;"> <span id="LC554" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3.7</span></span>
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555
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<pre style="margin: 0;"> <span id="LC555" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3.8</span></span>
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550
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556
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<pre style="margin: 0;"> <span id="LC556" class="line" lang="mosel"><span class="n" style="color: #333;">Classifier</span><span class="p">:</span> <span class="n" style="color: #333;">Programming</span> <span class="n" style="color: #333;">Language</span> <span class="p">::</span> <span class="n" style="color: #333;">Python</span> <span class="p">::</span> <span class="m" style="color: #099;">3.9</span></span>
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551
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<td class="diff-line-num new_line old" data-linenumber="557" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC551" class="line" lang="mosel"><span class="n" style="color: #333;">Requires</span><span class="p">-</span><span class="n" style="color: #333;">Python</span><span class="p">:</span> <span class="p">>=</span><span class="m" style="color: #099;">3.<span class="idiff left right">6</span></span></span>
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557
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<pre style="margin: 0;">+<span id="LC557" class="line" lang="mosel"><span class="n" style="color: #333;">Requires</span><span class="p">-</span><span class="n" style="color: #333;">Python</span><span class="p">:</span> <span class="p">>=</span><span class="m" style="color: #099;">3.<span class="idiff left right">7</span></span></span>
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552
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558
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<pre style="margin: 0;"> <span id="LC558" class="line" lang="mosel"><span class="n" style="color: #333;">Provides</span><span class="p">-</span><span class="n" style="color: #333;">Extra</span><span class="p">:</span> <span class="n" style="color: #333;">all</span></span></pre>
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<a href="https://salsa.debian.org/python-team/packages/tifffile/-/compare/5bea9ad9f9caeb54e479da614a97feac4110e3ab...1e2cb7a486032b83d3201fbcd054a84b89f31772#6000dbe87c32bc435db544e8382e5f5b92e11e77"><strong>tifffile.egg-info/requires.txt</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">numpy>=1.15.1</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">[all]</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">imagecodecs>=2020.<span class="idiff left right">2.18</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">matplotlib>=3.<span class="idiff left right">1</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">imagecodecs>=2020.<span class="idiff left right">5.30</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">matplotlib>=3.<span class="idiff left right">2</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">lxml</span></pre>
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<a href="https://salsa.debian.org/python-team/packages/tifffile/-/compare/5bea9ad9f9caeb54e479da614a97feac4110e3ab...1e2cb7a486032b83d3201fbcd054a84b89f31772#0897a6ad59d4e84cc745635b88c27baf0a78bd92"><strong>tifffile/tifffile.py</strong></a>
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