<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/diamond-aligner">Debian Med / diamond-aligner</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/6e1f144e8cf3d2929e99d1187c88fbd781173b8d">6e1f144e</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-21T19:54:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.5</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#5b96b592f653b66c869cde18ed755ab6510a8b44">
<span class="new-file">
+
docs/1 Tutorial.MD
</span>
</a>
</li>
<li class="file-stats">
<a href="#f76865de9ba2a6468413ec185fca613dd14a0d22">
<span class="new-file">
+
docs/2 Installation.MD
</span>
</a>
</li>
<li class="file-stats">
<a href="#b0db655489fb2392f0294a5ef6d4dc38eef5cae1">
<span class="new-file">
+
docs/3 Command line options.MD
</span>
</a>
</li>
<li class="file-stats">
<a href="#6c033bae66e47854683a3a0cbf7fcc0b4ffd1119">
<span class="new-file">
+
docs/4 Support.MD
</span>
</a>
</li>
<li class="file-stats">
<a href="#06f5db34ef59805b865b6ff1caaaa5e87bc030b9">
<span class="new-file">
+
docs/5 Advanced topics.MD
</span>
</a>
</li>
<li class="file-stats">
<a href="#e28bbc22525597e9c9102471d478dbb57309035e">
<span class="new-file">
+
docs/6 Distributed computing.MD
</span>
</a>
</li>
<li class="file-stats">
<a href="#8a7064daf863b0773b95a7d81a0f170afae6d00c">
<span class="new-file">
+
docs/Documentation.MD
</span>
</a>
</li>
<li class="file-stats">
<a href="#ba308c53c268704c3008f5e2e6e8129f9f6bf3fe">
src/ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#f76380e3e66f9453de89e5ac198478544cf1e6e4">
src/align/align.cpp
</a>
</li>
<li class="file-stats">
<a href="#f1fae2471d3aa9a609a9966be5b7ab4c0f58fa75">
src/align/align.h
</a>
</li>
<li class="file-stats">
<a href="#5a2381540b8362260dcaa6747086bb358097256e">
src/align/extend.cpp
</a>
</li>
<li class="file-stats">
<a href="#52ecbb45dea21619756b1951b32ef00fa81a1d54">
src/align/extend.h
</a>
</li>
<li class="file-stats">
<a href="#98a808eabbbc11da533eb019b5faf5950c4104ba">
src/align/gapped.cpp
</a>
</li>
<li class="file-stats">
<a href="#b18faac0ee01a4af7eb1b183c49e78e698af5c15">
src/align/gapped_filter.cpp
</a>
</li>
<li class="file-stats">
<a href="#1885ffadb5308ef489a619e821b06986ef227e22">
<span class="new-file">
+
src/align/global_ranking/extend.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#1b90f5ee8b6ca86e42623b99dcbd74ad0880c831">
<span class="new-file">
+
src/align/global_ranking/global_ranking.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#355a81a80ba3265c142881855d11cb783cf1858e">
<span class="new-file">
+
src/align/global_ranking/global_ranking.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#8f9453cefaa66bad075c8bcb49a08b740b24e222">
src/align/legacy/banded_swipe_pipeline.cpp
</a>
</li>
<li class="file-stats">
<a href="#79b081d050ff058cc4444df01970041d95b03792">
src/align/legacy/query_mapper.cpp
</a>
</li>
<li class="file-stats">
<a href="#28524a0ac5e69e8f46d523d7d08fb7bec288edf3">
src/align/legacy/query_mapper.h
</a>
</li>
<li class="file-stats">
<a href="#397b6eaafb1c6aa5e1c0eb8c411d294f99ff9ac0">
<span class="new-file">
+
src/align/load_hits.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#84d656034746137b8c6b0226ff878a5b99cc6bb3">
src/align/output.cpp
</a>
</li>
<li class="file-stats">
<a href="#27a98ed94137004899d98cd6a804c895e94342c2">
src/align/ranking.cpp
</a>
</li>
<li class="file-stats">
<a href="#6d09ff6bcfac65c792218c53e21ca1a9e62a26ba">
src/align/target.h
</a>
</li>
<li class="file-stats">
<a href="#f8990446cab751baed0b8c7fc38171e7d68cb1f7">
src/align/ungapped.cpp
</a>
</li>
<li class="file-stats">
<a href="#76d5a97c09cca591280144de40f9c04a5ec57ef7">
src/basic/basic.cpp
</a>
</li>
<li class="file-stats">
<a href="#6cf57e0e68e073933703dd5bf3f3ab05a826d0e6">
<span class="new-file">
+
src/basic/cbs.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#d70438045ab9a77b1beed28cd29f31eb908ad6a6">
<span class="new-file">
+
src/basic/cbs.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#fe8c534c15ea9cf93547993244c3ab903c4895ff">
src/basic/config.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/6e1f144e8cf3d2929e99d1187c88fbd781173b8d">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/diamond-aligner/-/commit/6e1f144e8cf3d2929e99d1187c88fbd781173b8d"}}</script>
</p>
</div>
</body>
</html>