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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/profbval">Debian Med / profbval</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/profbval/-/commit/59f1ecf6d0aca73f5f5cc960891c8598d2ddbc9c">59f1ecf6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-26T08:04:44+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profbval/-/commit/51801d4045aa4db7e3dc763e80e40ce09648de0a">51801d40</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-26T08:04:45+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profbval/-/commit/537d43c1e8633d2e03fe20786d59971b339ae9dd">537d43c1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-26T08:04:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profbval/-/commit/9b259418e9af65116d6680758553176adeee8327">9b259418</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-26T08:04:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/control
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profbval/-/commit/77cb52d4b74809f4166b9c84410702ea2c56ef43">77cb52d4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-26T08:04:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profbval/-/commit/9752d14705daeabef4d5928b9ba85c4ca8c7f2cc">9752d147</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-26T08:04:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profbval/-/commit/ad2f1266a748646f916b4c1f4afeac09030baec0">ad2f1266</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-26T08:05:02+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Submit (from ./configure).
Changes-By: lintian-brush
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profbval/-/commit/dbfcbc99e62a29d9fcf543d2c3fdddad192ebb6a">dbfcbc99</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-26T08:05:02+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright).
Changes-By: lintian-brush
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profbval/-/commit/1671855b88b8053c8654e2a8da352c06cbc8d15e">1671855b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-26T08:05:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.
Changes-By: lintian-brush
Fixes: lintian: uses-deprecated-adttmp
See-also: https://lintian.debian.org/tags/uses-deprecated-adttmp.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profbval/-/commit/d70f93fd2a2ee0d6396a69a168954da9803cf1db">d70f93fd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-26T08:05:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: watch file standard 4
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profbval/-/commit/7e6a9333aa4652a1330dd48cd607d3fdac80ae9a">7e6a9333</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-11-26T08:08:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#17d8869115f55e024a85a6d17443302815985358">
debian/tests/installation-test
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/profbval/-/compare/8797fd8a6e5b86dbe56901fc6b26cefb83cb638c...7e6a9333aa4652a1330dd48cd607d3fdac80ae9a#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">profbval (1.0.22-7) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Standards-Version: 4.5.1 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Remove trailing whitespace in debian/changelog (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Remove trailing whitespace in debian/control (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Submit (from ./configure).</span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Remove obsolete field Name from debian/upstream/metadata (already present in</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> machine-readable debian/copyright).</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * watch file standard 4 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 26 Nov 2020 08:05:03 +0100</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">profbval (1.0.22-6) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> * pp-popularity-contest only suggested</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,7 +34,7 @@ profbval (1.0.22-5) unstable; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">profbval (1.0.22-4) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> * added allow-stderr restriction to debian/tests/control - in case when<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> * added allow-stderr restriction to debian/tests/control - in case when</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> recommended package `pp-popularity-contest` is not installed,</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> and described that in debian/README.test</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> * add hardening</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28,7 +44,7 @@ profbval (1.0.22-4) unstable; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext">profbval (1.0.22-3) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> * changed citation in debian/upstream/metadata from search string to<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> * changed citation in debian/upstream/metadata from search string to</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> corresponding PMID article link</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> * add simple testsuite</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> * cme fix dpkg-control</span>
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<a href="https://salsa.debian.org/med-team/profbval/-/compare/8797fd8a6e5b86dbe56901fc6b26cefb83cb638c...7e6a9333aa4652a1330dd48cd607d3fdac80ae9a#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<a href="https://salsa.debian.org/med-team/profbval/-/compare/8797fd8a6e5b86dbe56901fc6b26cefb83cb638c...7e6a9333aa4652a1330dd48cd607d3fdac80ae9a#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,12 +5,13 @@ Uploaders: Laszlo Kajan <lkajan@rostlab.org>,</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 11~</span>),</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 13</span>),</span>
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> perl</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2</span>.1</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5</span>.1</span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/profbval</span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/profbval.git</span>
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Homepage: https://www.rostlab.org/owiki/index.php/PROFbval</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Package: profbval</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Architecture: all</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,11 +23,11 @@ Recommends: blast2,</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> profphd</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Suggests: pp-popularity-contest</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Description: predictor of flexible/rigid protein residues from sequence</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> PROFbval can be useful for both protein structure and<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> function predictions. For instance, a biologist can locate potentially<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> antigenic determinants by identifying the most flexible residues on the<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> protein surface. Additionally, a crystallographer can locate residues that<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> potentially have high experimental B-values.<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> PROFbval can be useful for both protein structure and</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> function predictions. For instance, a biologist can locate potentially</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> antigenic determinants by identifying the most flexible residues on the</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> protein surface. Additionally, a crystallographer can locate residues that</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> potentially have high experimental B-values.</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> PROFbval takes the following input, further described on profbval(1):</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> * a protein sequence in a FASTA file</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -35,8 +36,8 @@ Description: predictor of flexible/rigid protein residues from sequence</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> Background: the mobility of a given residue on the protein surface is related</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> to its functional role.</span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> Therefore, identification of extremely rigid or flexible<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> residues on the protein surface is helpful for identifying functionally<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> important residues in proteins. A common measure of atom mobility in proteins<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> Therefore, identification of extremely rigid or flexible</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> residues on the protein surface is helpful for identifying functionally</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> important residues in proteins. A common measure of atom mobility in proteins</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> is B-value data from x-ray crystallography structures. PROFbval is the first</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> tool to predict normalized backbone B-values from amino-acid sequence.</span></pre>
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<a href="https://salsa.debian.org/med-team/profbval/-/compare/8797fd8a6e5b86dbe56901fc6b26cefb83cb638c...7e6a9333aa4652a1330dd48cd607d3fdac80ae9a#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<a href="https://salsa.debian.org/med-team/profbval/-/compare/8797fd8a6e5b86dbe56901fc6b26cefb83cb638c...7e6a9333aa4652a1330dd48cd607d3fdac80ae9a#17d8869115f55e024a85a6d17443302815985358"><strong>debian/tests/installation-test</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,12 +6,12 @@ set -e</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span>profbval</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$A<span class="idiff left right">DT</span>TMP</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">A<span class="idiff left right">DT</span>TMP</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="si" style="color: #d14;">)</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="nv" style="color: #008080;">$A<span class="idiff left right">DT</span>TMP</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$A<span class="idiff left right">UTOPKGTEST_</span>TMP</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">A<span class="idiff left right">UTOPKGTEST_</span>TMP</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="si" style="color: #d14;">)</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="nv" style="color: #008080;">$A<span class="idiff left right">UTOPKGTEST_</span>TMP</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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12
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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13
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$A<span class="idiff left right">DT</span>TMP</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$A<span class="idiff left right">UTOPKGTEST_</span>TMP</span></span>
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15
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"></span>
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> /usr/share/doc/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/examples/<span class="k" style="font-weight: 600;">*</span> <span class="nb" style="color: #0086b3;">.</span></span>
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell">find <span class="nb" style="color: #0086b3;">.</span> <span class="nt" style="color: #000080;">-type</span> f <span class="nt" style="color: #000080;">-name</span> <span class="s2" style="color: #d14;">"*.gz"</span> <span class="nt" style="color: #000080;">-exec</span> <span class="nb" style="color: #0086b3;">gunzip</span> <span class="se" style="color: #d14;">\{\}</span> <span class="se" style="color: #d14;">\;</span></span>
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<a href="https://salsa.debian.org/med-team/profbval/-/compare/8797fd8a6e5b86dbe56901fc6b26cefb83cb638c...7e6a9333aa4652a1330dd48cd607d3fdac80ae9a#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">Name: </span>profbval</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">Bug-Submit: https://rostlab.org/cgi-bin/bugzilla3/enter_bug.cgi?product=</span>profbval</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Reference:</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> - Author: Avner Schlessinger and Guy Yachdav and Burkhard Rost</span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Title: ></span>
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<a href="https://salsa.debian.org/med-team/profbval/-/compare/8797fd8a6e5b86dbe56901fc6b26cefb83cb638c...7e6a9333aa4652a1330dd48cd607d3fdac80ae9a#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">version=<span class="idiff left right">3</span></span>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">version=<span class="idiff left right">4</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">opts=pasv ftp://rostlab.org/profbval/profbval-([0-9.]+)\.tar\.gz</span></pre>
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