<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/salmon">Debian Med / salmon</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/91a79c52dc6cbacb4bd9bea6d540f5b713689533">91a79c52</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-26T16:12:50+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/a6b0c12ceb9b37291bdc9a7e978ce65b4ce5a1f8">a6b0c12c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-26T16:12:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.4.0+ds1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/d56f613e20fab00c7f33d6f47b70f4f2944313c1">d56f613e</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-26T16:12:54+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.4.0+ds1'
Update to upstream version '1.4.0+ds1'
with Debian dir 8de8319023d888d3233150c0842f1970cc6113a1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/2ad74496107c54d844d165215c9ea22c0bd8153a">2ad74496</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-26T16:12:55+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/52bbdd9deb02e5cd718452a6d17bd6c75d98fdc9">52bbdd9d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-26T16:30:06+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refreshed patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/7e320bee76124d99e556233b3e40b2cf910d103b">7e320bee</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-26T17:05:28+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/control: build-dep on libsimde-dev
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/775c854d2c405f56d8d954fce3d0c416a2a658d2">775c854d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-26T17:31:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update pufferfish snapshot
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/1b698d7c2a9001412f2654ef9671671bbdefec18">1b698d7c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-26T17:31:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">test
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/8f6a9e2a272df7de25cb00a84782bc8d4dc5e842">8f6a9e2a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-26T17:31:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">arm64
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/1cbe5f8b25e55ac9be2d44c6e64753ba860e3436">1cbe5f8b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-26T17:55:08+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/patches/spelling: new typo fixes
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/88839d4410367711930f9eae0b79fc68432273c9">88839d44</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-26T19:10:46+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#34ffb03041dc818ba71da0518ec52a0134f543f8">
current_version.txt
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#560e024c4cb622c8462fe68d5daf07f5a28712dd">
<span class="new-file">
+
debian/external/install/include/pufferfish/BulkChunk.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#f65cbc1658a840e6399b6109e31c3c0260b95196">
debian/external/install/include/pufferfish/CanonicalKmerIterator.hpp
</a>
</li>
<li class="file-stats">
<a href="#75baab7aa47a40894b44385b6d45ae3c60758186">
debian/external/install/include/pufferfish/MemCollector.hpp
</a>
</li>
<li class="file-stats">
<a href="#b70f29bec9ee4ebd941dfb150d7fe71f72e5c949">
debian/external/install/include/pufferfish/ProgOpts.hpp
</a>
</li>
<li class="file-stats">
<a href="#90015bf59e5028c2f96879da350068ff0a9b91d9">
debian/external/install/include/pufferfish/SAMWriter.hpp
</a>
</li>
<li class="file-stats">
<a href="#b2e923cb78e8a4abdff87410ff8351c3b98545dd">
debian/external/install/include/pufferfish/chobo/memory_view.hpp
</a>
</li>
<li class="file-stats">
<a href="#5c5cddacf087b4ce3a6b43b723da6bb67c4e7ce0">
debian/external/install/include/pufferfish/chobo/static_vector.hpp
</a>
</li>
<li class="file-stats">
<a href="#d47a357463fe5bde9ae548ab389e6d4a1bd09e88">
debian/external/install/include/pufferfish/rank9sel.hpp
</a>
</li>
<li class="file-stats">
<a href="#bab0168e08feaed4f313be44186d935586cb504a">
debian/external/pufferfish/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#9e818bc4d17a4dc95784e4c1311c490285304c40">
debian/external/pufferfish/cmake/Modules/FindJemalloc.cmake
</a>
</li>
<li class="file-stats">
<a href="#709c32d97d3d0936fd7ef98f654b4db6c7df35a4">
debian/external/pufferfish/external/twopaco/graphconstructor/vertexenumerator.cpp
</a>
</li>
<li class="file-stats">
<a href="#97cf12036439953808e2fa87cfa9531806f788c3">
<span class="new-file">
+
debian/external/pufferfish/include/BulkChunk.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#42aedcaea2f67ce8dc591fa1e125abd4ab77a25f">
debian/external/pufferfish/include/CanonicalKmerIterator.hpp
</a>
</li>
<li class="file-stats">
<a href="#9d49b6d883b0ee8a9df68d140bf8cf1c364bf076">
debian/external/pufferfish/include/FastxParserThreadUtils.hpp
</a>
</li>
<li class="file-stats">
<a href="#ee160437f6cab1186771c4db1c30ba8db6eff232">
debian/external/pufferfish/include/MemCollector.hpp
</a>
</li>
<li class="file-stats">
<a href="#8a7be6947120fe5eb6688d5f7dd7fde4686b7844">
debian/external/pufferfish/include/ProgOpts.hpp
</a>
</li>
<li class="file-stats">
<a href="#0d97a02aa9fcc0af643f8e61dfb0ff2be455f818">
debian/external/pufferfish/include/SAMWriter.hpp
</a>
</li>
<li class="file-stats">
<a href="#8b6924680988413086bc723433b4c4ef51311803">
debian/external/pufferfish/include/chobo/memory_view.hpp
</a>
</li>
<li class="file-stats">
<a href="#8380204626ae232d248c27669504b9cd6a44044c">
debian/external/pufferfish/include/chobo/static_vector.hpp
</a>
</li>
<li class="file-stats">
<a href="#78bc2256a056d4139875d56fe4b86e4081ef6c3f">
debian/external/pufferfish/include/rank9sel.hpp
</a>
</li>
<li class="file-stats">
<a href="#80b54ba69dc757cd8eb33db44add25299f82be0d">
<span class="new-file">
+
debian/external/pufferfish/scripts/microbiome_experiments/bulk_setting.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#75514d9f71cbb87e7932fb920ab671b78e80d571">
<span class="new-file">
+
debian/external/pufferfish/scripts/microbiome_experiments/clean_results.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#f84798551d7d06ca809318c5eafcf1c611d40b89">
<span class="new-file">
+
debian/external/pufferfish/scripts/microbiome_experiments/evaluate_bulk_results.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#b2b096361e026865a0f246dbf77a0844f1f1418f">
<span class="new-file">
+
debian/external/pufferfish/scripts/microbiome_experiments/microbiome_complete_pipeline.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#cfb9971139c429e0ee16f6a759eed54ae551eece">
<span class="new-file">
+
debian/external/pufferfish/scripts/microbiome_experiments/microbiome_prep_performanceBenchmarks.sh
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #666;">
—
<br>
<a href="https://salsa.debian.org/med-team/salmon/-/compare/f39a9aaf858789de2ea12c7ec23357a92a4e3555...88839d4410367711930f9eae0b79fc68432273c9">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>