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GitLab
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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/salmon">Debian Med / salmon</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/a6b0c12ceb9b37291bdc9a7e978ce65b4ce5a1f8">a6b0c12c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-11-26T16:12:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.4.0+ds1</pre>
</li>
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<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#34ffb03041dc818ba71da0518ec52a0134f543f8">
current_version.txt
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<li class="file-stats">
<a href="#22467847d50472fa455059dd018d8c341ccb0db7">
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doc/salmon_logo.png
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<li class="file-stats">
<a href="#5a1b92f4d2201f84f3ab9bfe7917ee0a5531e53d">
doc/source/alevin.rst
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<li class="file-stats">
<a href="#9d4e8ab62832d7b298261aae1fe1123d28783525">
doc/source/conf.py
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<li class="file-stats">
<a href="#d2512a023edf5bc0bc15dc59b6ac10eae6a5dd2d">
doc/source/salmon.rst
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<li class="file-stats">
<a href="#8ffde13df31f212345642ccfa4755f3bd99e7e61">
docker/Dockerfile
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<li class="file-stats">
<a href="#3cbc10c17d78796adbdc9a8a8b8702f83a02d41f">
docker/build_test.sh
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<li class="file-stats">
<a href="#2bc7c7c64784b968b1404d3f09805fe683f980b1">
include/AlevinOpts.hpp
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<li class="file-stats">
<a href="#740f5e5c647e154c4b3feff897ca8ed5293c0498">
include/AlevinTypes.hpp
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<li class="file-stats">
<a href="#1fe0f4d55f3b84573f46c3b205cdf1546c6f1595">
include/AlevinUtils.hpp
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<li class="file-stats">
<a href="#190d99cc5ab950958653ebc379ba8a35f8e86031">
include/BAMQueue.tpp
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<li class="file-stats">
<a href="#a9730033c96a73430dfa9e68a0a02623e62e903d">
include/BAMUtils.hpp
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<li class="file-stats">
<a href="#335609a35be34ca99f8e15537a878ae3e11a6051">
include/FastxParserThreadUtils.hpp
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<li class="file-stats">
<a href="#37e4cfae6d69387daf236c81a57560b6d8bc29dd">
include/LibraryTypeDetector.hpp
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<li class="file-stats">
<a href="#b28e1098f756957ff90d12768200c4e9602817b4">
include/SalmonConfig.hpp
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<li class="file-stats">
<a href="#44e448f604f7e82906787f365f589a3ea4657ba9">
include/SalmonDefaults.hpp
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<li class="file-stats">
<a href="#2eeada36706cad6f17cb60346f7d2f9f4b479a7b">
include/SalmonOpts.hpp
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<li class="file-stats">
<a href="#0c4db41611a51a682d0d085f02905ac18c219b88">
include/SalmonUtils.hpp
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<li class="file-stats">
<a href="#ce3a50cf35cf7f12a5dfa968fc323211ab21cf88">
include/Sampler.hpp
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<li class="file-stats">
<a href="#8ed491100d2189e665edcdee1d3d3c1bf51ac354">
include/SingleCellProtocols.hpp
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<li class="file-stats">
<a href="#2ac0798d0e8326fc51e2fc962d53f8c078c5b6a9">
<span class="new-file">
+
include/peglib.h
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<li class="file-stats">
<a href="#f9f9712eb3a996d78129f5c5aa9ca0f84a1648c3">
<span class="new-file">
+
include/radicl/BasicBinWriter.hpp
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<li class="file-stats">
<a href="#151e1a8a93189d0202c983db8a62d3887c32760d">
<span class="new-file">
+
include/radicl/RADHeader.hpp
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<li class="file-stats">
<a href="#795a968f3739c8b5a23b2b6cb3f123a4dbdfbd5f">
include/spdlog/details/async_log_helper.h
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<li class="file-stats">
<a href="#d9225c32d4f01af48593b4d164c0276ef713fb37">
scripts/fetchPufferfish.sh
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<li class="file-stats">
<a href="#8fdbe631bc12d59b3cea9274359041cf09b11240">
src/Alevin.cpp
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<li class="file-stats">
<a href="#9fcb6347f66e2015a27d89eec62944e82352b5d9">
src/AlevinHash.cpp
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<li class="file-stats">
<a href="#d95dc025bfe71cabe95139b51ea263244f8cbab2">
src/AlevinUtils.cpp
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<h5>The diff was not included because it is too large.</h5>
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