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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/peptidebuilder">Debian Med / peptidebuilder</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/peptidebuilder/-/commit/16a6a0d19a4c9de1642c783933561407b6ac8ed8">16a6a0d1</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-11-29T10:29:13+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/u/metadata
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/peptidebuilder/-/commit/36340d290d170ffe7260ab2bb32486bfc5b5ebad">36340d29</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-11-29T06:02:02+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Replace pathlib with os in examples/evaluation.py
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/peptidebuilder/-/commit/a6cf87e4a9a1a12e61e5fbb8d4f5ac6450833fb2">a6cf87e4</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2020-11-29T12:08:50+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add autopkgtests
</pre>
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<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a72912f29f42f3537ef3d4100fe771693a96245f">
<span class="new-file">
+
debian/patches/fix-paths-with-os.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
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+
debian/patches/series
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<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
<span class="new-file">
+
debian/tests/control
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
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+
debian/tests/run-unit-test
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<h4>Changes:</h4>
<li id="a72912f29f42f3537ef3d4100fe771693a96245f">
<a href="https://salsa.debian.org/med-team/peptidebuilder/-/compare/5b0ac798bc6a0d20c800a11d3488393d1ea7761c...a6cf87e4a9a1a12e61e5fbb8d4f5ac6450833fb2#a72912f29f42f3537ef3d4100fe771693a96245f"><strong>debian/patches/fix-paths-with-os.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Avoid using POSIX path</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Nilesh Patra <npatra974@gmail.com></span></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: https://github.com/clauswilke/PeptideBuilder/pull/43</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Last-Update: 2020-11-29</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/examples/evaluation.py</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/examples/evaluation.py</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-from pathlib import Path</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+import os</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> import math</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> from Bio.PDB import PDBIO</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="p">@@ -38,7 +38,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> def build_linear_model(pdb_filename):</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> parser = PDBParser()</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- structure = parser.get_structure("sample", Path(PDBdir, pdb_filename))</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ structure = parser.get_structure("sample", os.path.join(PDBdir, pdb_filename))</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> model = structure[0]</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> chain = model["A"]</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> model_structure_geo = []</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="p">@@ -58,13 +58,13 @@</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> def make_pdb_file(struct, file_nom):</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> outfile = PDBIO()</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> outfile.set_structure(struct)</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- outfile.save(Path(PDBdir, file_nom))</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ outfile.save(os.path.join(PDBdir, file_nom))</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> return file_nom</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> def build_backbone_model(pdb_filename):</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> parser = PDBParser()</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- structure = parser.get_structure("sample", Path(PDBdir, pdb_filename))</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ structure = parser.get_structure("sample", os.path.join(PDBdir, pdb_filename))</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> model = structure[0]</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> chain = model["A"]</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"> model_structure_geo = []</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="p">@@ -134,7 +134,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"> def build_all_angles_model(pdb_filename):</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"> parser = PDBParser()</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- structure = parser.get_structure("sample", Path(PDBdir, pdb_filename))</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ structure = parser.get_structure("sample", os.path.join(PDBdir, pdb_filename))</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"> model = structure[0]</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"> chain = model["A"]</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"> model_structure_geo = []</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="p">@@ -192,7 +192,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"> def build_phi_psi_model(pdb_filename):</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"> parser = PDBParser()</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- structure = parser.get_structure("sample", Path(PDBdir, pdb_filename))</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ structure = parser.get_structure("sample", os.path.join(PDBdir, pdb_filename))</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"> model = structure[0]</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"> chain = model["A"]</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"> seq = ""</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"><span class="p">@@ -244,8 +244,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"> def compare_structure(reference, alternate):</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"> parser = PDBParser()</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ref_struct = parser.get_structure("Reference", Path(PDBdir, reference))</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- alt_struct = parser.get_structure("Alternate", Path(PDBdir, alternate))</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ref_struct = parser.get_structure("Reference", os.path.join(PDBdir, reference))</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ alt_struct = parser.get_structure("Alternate", os.path.join(PDBdir, alternate))</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"> ref_model = ref_struct[0]</span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"> ref_chain = ref_model["A"]</span></pre>
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<a href="https://salsa.debian.org/med-team/peptidebuilder/-/compare/5b0ac798bc6a0d20c800a11d3488393d1ea7761c...a6cf87e4a9a1a12e61e5fbb8d4f5ac6450833fb2#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">fix-paths-with-os.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/peptidebuilder/-/compare/5b0ac798bc6a0d20c800a11d3488393d1ea7761c...a6cf87e4a9a1a12e61e5fbb8d4f5ac6450833fb2#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Tests: run-unit-test</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Depends: @, python3</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr</span></pre>
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<a href="https://salsa.debian.org/med-team/peptidebuilder/-/compare/5b0ac798bc6a0d20c800a11d3488393d1ea7761c...a6cf87e4a9a1a12e61e5fbb8d4f5ac6450833fb2#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-e</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"peptidebuilder"</span></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"><span class="nv" style="color: #008080;">CUR_DIR</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">pwd</span><span class="sb" style="color: #d14;">`</span></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="sb" style="color: #d14;">`</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">CUR_DIR</span><span class="k" style="font-weight: 600;">}</span>/examples/<span class="k" style="font-weight: 600;">*</span> <span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">mv</span> <span class="nt" style="color: #000080;">-f</span> reconstructed_RMSDs.txt test.txt</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell"></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Test 1"</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell">python3 simpleExample.py</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell"><span class="o" style="font-weight: 600;">[</span> <span class="nt" style="color: #000080;">-s</span> example.pdb <span class="o" style="font-weight: 600;">]</span> <span class="o" style="font-weight: 600;">||</span> <span class="nb" style="color: #0086b3;">exit </span>1 </span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat </span>example.pdb</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"PASS"</span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell"></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Test 2"</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell">python3 evaluation.py 2>/dev/null</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>f <span class="k" style="font-weight: 600;">in </span>PDBs/Aligned<span class="k" style="font-weight: 600;">*</span>.pdb PDBs/AllAngles<span class="k" style="font-weight: 600;">*</span>.pdb PDBs/Backbone<span class="k" style="font-weight: 600;">*</span>.pdb PDBs/PhiPsi<span class="k" style="font-weight: 600;">*</span>.pdb</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: #008080;">$f</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="shell"> <span class="o" style="font-weight: 600;">[</span> <span class="nt" style="color: #000080;">-s</span> <span class="nv" style="color: #008080;">$f</span> <span class="o" style="font-weight: 600;">]</span> <span class="o" style="font-weight: 600;">||</span> <span class="nb" style="color: #0086b3;">exit </span>1</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: #000080;">-f</span> <span class="nv" style="color: #008080;">$f</span></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="shell"></span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># The diff might not work as ecpected on architectures other than amd64</span></span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="si" style="color: #d14;">$(</span>dpkg-architecture <span class="nt" style="color: #000080;">-qDEB_BUILD_ARCH</span><span class="si" style="color: #d14;">)</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">"amd64"</span> <span class="o" style="font-weight: 600;">]</span></span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="shell"><span class="k" style="font-weight: 600;">then</span></span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"diff expected and generated"</span></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="shell"> diff <span class="nt" style="color: #000080;">-u</span> reconstructed_RMSDs.txt test.txt</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="shell"><span class="o" style="font-weight: 600;">[</span> <span class="nt" style="color: #000080;">-s</span> reconstructed_RMSDs.txt <span class="o" style="font-weight: 600;">]</span> <span class="o" style="font-weight: 600;">||</span> <span class="nb" style="color: #0086b3;">exit </span>1</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"PASS"</span></span></pre>
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<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<a href="https://salsa.debian.org/med-team/peptidebuilder/-/compare/5b0ac798bc6a0d20c800a11d3488393d1ea7761c...a6cf87e4a9a1a12e61e5fbb8d4f5ac6450833fb2#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">---</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Archive: GitHub</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Bug-Database: https://github.com/clauswilke/PeptideBuilder/issues</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Bug-Submit: https://github.com/clauswilke/PeptideBuilder/issues/new</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Changelog: https://github.com/clauswilke/PeptideBuilder/tags</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Repository: https://github.com/clauswilke/PeptideBuilder.git</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Repository-Browse: https://github.com/clauswilke/PeptideBuilder</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> - Author: ></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> Matthew Z. Tien and Dariya K. Sydykova and Austin G. Meyer and</span>
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