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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bioperl-run">Debian Med / bioperl-run</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/-/commit/76fd735bd2bcbeb18f7cd7a268fb5cd23e8dad83">76fd735b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-03T21:58:35+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Depends: libfile-sort-perl
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/-/commit/6d67667a15a31adc7783ba8469d772df2c9573d7">6d67667a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-03T21:59:01+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/-/commit/3861dea567e5fbb9731fe10a099de908d1f19dea">3861dea5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-03T21:59:01+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/-/commit/c759179a177e62c10ea0a5346a80ac61f7bf723d">c759179a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-03T21:59:06+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/control
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/-/commit/7d8c9a8542ae51ea7e538a327da35a675227b933">7d8c9a85</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-03T21:59:08+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove unnecessary Team Upload line in changelog.
Changes-By: lintian-brush
</pre>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/bioperl-run/-/compare/ff4658f3507a773ad485cd01f72bc09a531a6b4a...7d8c9a8542ae51ea7e538a327da35a675227b933#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">bioperl-run (1.7.3-5) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> [ Michael R. Crusoe ]</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Add build-dep on libfile-sort-perl as that has arrived in Debian</span>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * debian/upstream/metadata: Add Repository & Repository-Browse</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,7 +9,14 @@ bioperl-run (1.7.3-5) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * Disable tests for RemoteBlast_rpsblast</span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Extract BEDTools version properly</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> -- Pranav Ballaney <ballaneypranav@gmail.com> Sun, 05 Apr 2020 21:55:41 +0530</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * Depends: libfile-sort-perl</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> Closes: #974168</span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> * Standards-Version: 4.5.1 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> * Remove trailing whitespace in debian/control (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 03 Dec 2020 21:57:37 +0100</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">bioperl-run (1.7.3-4) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/bioperl-run/-/compare/ff4658f3507a773ad485cd01f72bc09a531a6b4a...7d8c9a8542ae51ea7e538a327da35a675227b933#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@ Uploaders: Charles Plessy <plessy@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Testsuite: autopkgtest-pkg-perl</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 1<span class="idiff left right">2</span>)</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 1<span class="idiff left right">3</span>)</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Build-Depends-Indep: perl,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> libmodule-build-perl,</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> bioperl (>= 1.7.4),</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -55,7 +55,7 @@ Build-Depends-Indep: perl,</td>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> pftools,</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"># Needed for the network tests:</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> libwww-perl</span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">0</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">1</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/bioperl-run</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/bioperl-run.git</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext">Homepage: https://metacpan.org/release/BioPerl-Run</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -119,7 +119,7 @@ Suggests: gmap,</td>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"># footprinter,</span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"># genemark-hmm,</span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"># genscan,</span>
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="plaintext"># gerp, ( gerpcol )<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"># gerp, ( gerpcol )</span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"># glimmer2,</span>
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124
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"># lvb,</span>
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125
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"># match,</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -163,7 +163,8 @@ Section: perl</td>
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163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> ${perl:Depends},</span>
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> libbio-perl-perl (>= 1.7.1-1),</span>
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<td class="diff-line-num old old_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
166
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="plaintext"> libipc-run-perl</span>
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext"> libipc-run-perl,</span>
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> libfile-sort-perl</span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext">Recommends: libalgorithm-diff-perl,</span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> libio-string-perl,</span>
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<td class="diff-line-num new_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> libxml-twig-perl,</span>
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