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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/mcaller">Debian Med / mcaller</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/mcaller/-/commit/d09b9e0c6c4763a12b40267a165c0ca8676619fa">d09b9e0c</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-12-03T00:09:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/watch: Upstream has first release
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mcaller/-/commit/2c8a94804223680226bee22aee3e0cd54372c5dc">2c8a9480</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-12-03T00:09:44+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mcaller/-/commit/1883235d6e642b05729fc3be7202a6b8802dd666">1883235d</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-12-03T00:09:44+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mcaller/-/commit/990b3cffb2b1bba4bdc473f456b4e0bce8ea863c">990b3cff</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-12-03T00:10:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.0'
Update to upstream version '1.0'
with Debian dir 043913077dc4132e18f217373f40bb551002cf93</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mcaller/-/commit/5795fbabb620e29704690ad8971db7462cfa5297">5795fbab</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-12-03T00:10:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mcaller/-/commit/15e9ecf539226f3f33c00516d72879d707be81a7">15e9ecf5</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-12-03T00:10:15+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mcaller/-/commit/a0afca77c35dfddc4917062ea176f865a033eb70">a0afca77</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-12-03T00:10:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mcaller/-/commit/f805ec32faa604d5e6c3ad0a2ccbecb9ccc4bd36">f805ec32</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-12-03T00:11:22+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mcaller/-/commit/51ab9f3890c5f27fb1351c333905ab2b8dc5b09a">51ab9f38</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-12-03T01:17:56+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">subject to peer review
</pre>
</li>
</ul>
<h4>14 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#68e0b13744e158347bfd74ebaaca667435f07d14">
<span class="new-file">
+
debian/manpages
</span>
</a>
</li>
<li class="file-stats">
<a href="#3a59e5093aa66cffb63defc939b58083ffe72ecf">
debian/mcaller.install
</a>
</li>
<li class="file-stats">
<a href="#8922aacfc6e7989eb3df04bf9d6cebf8799cd80f">
<span class="new-file">
+
debian/mcaller.links
</span>
</a>
</li>
<li class="file-stats">
<a href="#2bad9b23d930015b61a3593fa5a2df821933d7d8">
<span class="new-file">
+
debian/mcaller.lintian-overrides
</span>
</a>
</li>
<li class="file-stats">
<a href="#c95b49fcdcf94cb632aec008933196e57cb26c3c">
debian/patches/python2to3.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#65a2ca2587421e6528362bd4dd0d54c52c8aac02">
testdata/masonread1.eventalign.diffs.6
</a>
</li>
<li class="file-stats">
<a href="#2045b9d43c6fe87f31f71cc0133242f290c7f3d4">
testdata/masonread1.eventalign.diffs.6.train
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
<a href="https://salsa.debian.org/med-team/mcaller/-/compare/5116e888737a0c7c7e949822a115c456f7a31abd...51ab9f3890c5f27fb1351c333905ab2b8dc5b09a#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d"><strong>README.md</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -139,7 +139,7 @@ Reference fasta, PacBio calls for m6A and a subset of A positions, and eventalig</td>
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<td class="diff-line-num old_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
139
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<td class="diff-line-num new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
139
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC139" class="line" lang="markdown"> This will generate the output file testdata/masonread1.eventalign.diffs.6</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
140
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<td class="diff-line-num new_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
140
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC140" class="line" lang="markdown"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
141
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<td class="diff-line-num new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="markdown"><span class="p">```</span><span class="nl"> </span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="markdown">./make_bed.py -f testdata/masonread1.eventalign.diffs.6 -d 1 -<span class="idiff left right">m</span> 0.5 </span>
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<td class="diff-line-num new old_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC142" class="line" lang="markdown">./make_bed.py -f testdata/masonread1.eventalign.diffs.6 -d 1 -<span class="idiff left right">t</span> 0.5 </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC143" class="line" lang="markdown"><span class="p">```</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="markdown"> Will then generate the output bed file testdata/masonread.methylation.summary.bed with columns chrom, chromStart, chromEnd, context, % methylated, strand, depth of coverage</span>
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<td class="diff-line-num old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="markdown"></span>
</pre>
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<br>
</li>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/mcaller/-/compare/5116e888737a0c7c7e949822a115c456f7a31abd...51ab9f3890c5f27fb1351c333905ab2b8dc5b09a#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">mcaller (<span class="idiff left right">0.3+git20200621.90f6389-1) UNRELEASED</span>; urgency=medium</span>
</pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">mcaller (<span class="idiff left right">1.0-1) unstable</span>; urgency=medium</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #969558)</span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,5 +6,10 @@ mcaller (0.3+git20200621.90f6389-1) UNRELEASED; urgency=medium</td>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> - installation should be done properly - needs setup.py ?!?</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> - .py in executables (secondary)</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> - README and test files does seem to be in sync with current code.</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * New upstream version</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Standards-Version: 4.5.1 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * Remove trailing whitespace in debian/rules (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> Repository-Browse.</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> <span class="idiff left right">Fri, 04 Sep 2020 22:28:05 +02</span>00</span></pre>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> <span class="idiff left right">Thu, 03 Dec 2020 00:11:06 +01</span>00</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/mcaller/-/compare/5116e888737a0c7c7e949822a115c456f7a31abd...51ab9f3890c5f27fb1351c333905ab2b8dc5b09a#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,8 +6,9 @@ Uploaders: Steffen Moeller <moeller@debian.org></td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> dh-python,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> python3-all,</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> python3-setuptools</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.5.0</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> python3-setuptools,</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> help2man</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Standards-Version: 4.5.1</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/mcaller</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/mcaller.git</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Homepage: https://github.com/al-mcintyre/mCaller</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,7 +17,8 @@ Rules-Requires-Root: no</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Package: mcaller</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext">Depends: ${python3:Depends},</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">Depends: python3,</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> ${python3:Depends},</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> python3-sklearn,</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> python3-h5py,</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian/mCaller.1 </span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">debian/make_bed.1 </span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">debian/compare_genomes.1 </span></pre>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="n" style="color: #333;">compare_genomes</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left right">bin</span></span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="php"><span class="n" style="color: #333;">make_bed</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left right">bin</span></span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="php"><span class="n" style="color: #333;">mCaller</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left right">bin</span></span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="php"><span class="n" style="color: #333;">extract_contexts</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">lib</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">python3</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">dist</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">packages</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff right">mCaller</span></span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="php"><span class="n" style="color: #333;">load_mCaller_data</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">lib</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">python3</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">dist</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">packages</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff right">mCaller</span></span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="php"><span class="n" style="color: #333;">plotlib</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">lib</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">python3</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">dist</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">packages</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff right">mCaller</span></span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="php"><span class="n" style="color: #333;">read_qual</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">lib</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">python3</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">dist</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">packages</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff right">mCaller</span></span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="php"><span class="n" style="color: #333;">train_model</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">lib</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">python3</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">dist</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">packages</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff right">mCaller</span></span></span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="n" style="color: #333;">compare_genomes</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">share</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">mCaller</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">/</span></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="n" style="color: #333;">make_bed</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">share</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">mCaller</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">/</span></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"><span class="n" style="color: #333;">mCaller</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">share</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">mCaller</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">/</span></span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="php"><span class="n" style="color: #333;">extract_contexts</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">share</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">mCaller</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">/</span></span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="php"><span class="n" style="color: #333;">load_mCaller_data</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">share</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">mCaller</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">/</span></span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="php"><span class="n" style="color: #333;">plotlib</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">share</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">mCaller</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">/</span></span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="php"><span class="n" style="color: #333;">read_qual</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">share</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">mCaller</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">/</span></span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="php"><span class="n" style="color: #333;">train_model</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">py</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;"><span class="idiff left">share</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">mCaller</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">/</span></span></span></pre>
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<a href="https://salsa.debian.org/med-team/mcaller/-/compare/5116e888737a0c7c7e949822a115c456f7a31abd...51ab9f3890c5f27fb1351c333905ab2b8dc5b09a#8922aacfc6e7989eb3df04bf9d6cebf8799cd80f"><strong>debian/mcaller.links</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">/usr/share/mCaller/mCaller.py /usr/bin/mCaller</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">/usr/share/mCaller/make_bed.py /usr/bin/make_bed</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">/usr/share/mCaller/compare_genomes.py /usr/bin/compare_genomes</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">/usr/share/mCaller/mCaller.py /usr/lib/debian-med/bin/mCaller.py</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">/usr/share/mCaller/make_bed.py /usr/lib/debian-med/bin/make_bed.py</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">/usr/share/mCaller/compare_genomes.py /usr/lib/debian-med/bin/compare_genomes.py</span></pre>
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<a href="https://salsa.debian.org/med-team/mcaller/-/compare/5116e888737a0c7c7e949822a115c456f7a31abd...51ab9f3890c5f27fb1351c333905ab2b8dc5b09a#2bad9b23d930015b61a3593fa5a2df821933d7d8"><strong>debian/mcaller.lintian-overrides</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"># It is a "picture"</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">mcaller: description-starts-with-leading-spaces</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"># The debian-med separate bin for compatibility with .py file endings</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">mcaller: breakout-link usr/lib/debian-med/bin/compare_genomes.py -> usr/share/mCaller/compare_genomes.py</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">mcaller: breakout-link usr/lib/debian-med/bin/mCaller.py -> usr/share/mCaller/mCaller.py</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">mcaller: breakout-link usr/lib/debian-med/bin/make_bed.py -> usr/share/mCaller/make_bed.py</span></pre>
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<a href="https://salsa.debian.org/med-team/mcaller/-/compare/5116e888737a0c7c7e949822a115c456f7a31abd...51ab9f3890c5f27fb1351c333905ab2b8dc5b09a#c95b49fcdcf94cb632aec008933196e57cb26c3c"><strong>debian/patches/python2to3.patch</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mcaller<span class="idiff left right">-0.0</span>/compare_genomes.py</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mcaller/compare_genomes.py</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mcaller<span class="idiff left right">-0.0</span>.orig/compare_genomes.py</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mcaller<span class="idiff left right">-0.0</span>/compare_genomes.py</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mcaller.orig/compare_genomes.py</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mcaller/compare_genomes.py</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="p">@@ -28,7 +28,7 @@</span> def compare_by_position(bed1,bed2,xmfa):</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"> t,pval3 = 'none','missing df'</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"> d,pval4 = ks_2samp(pos_dict[0][pos][1],pos_dict[0][pos][1])</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,10 +20,10 @@ Index: mcaller-0.0/compare_genomes.py</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="diff"> sys.exit(0)</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"> assert os.path.isfile(args.bed1), 'file not found at '+args.bed1</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mcaller<span class="idiff left right">-0.0</span>/make_bed.py</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mcaller/make_bed.py</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mcaller<span class="idiff left right">-0.0</span>.orig/make_bed.py</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mcaller<span class="idiff left right">-0.0</span>/make_bed.py</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mcaller.orig/make_bed.py</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mcaller/make_bed.py</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="diff"><span class="p">@@ -75,7 +75,7 @@</span> def aggregate_by_pos(meth_fi,aggfi,depth</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="diff"> values_dict = {}</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="diff"> for line in open(meth_fi,'r'):</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -63,10 +63,10 @@ Index: mcaller-0.0/make_bed.py</td>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="diff"> aggregate_by_pos(args.mCaller_file,output_file,args.min_read_depth,args.mod_threshold,args.positions,args.control,args.vo,args.gff,args.ref,args.plot,args.plotdir,args.plotsummary)</span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mcaller<span class="idiff left right">-0.0</span>/extract_contexts.py</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mcaller/extract_contexts.py</span></span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mcaller<span class="idiff left right">-0.0</span>.orig/extract_contexts.py</span></span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mcaller<span class="idiff left right">-0.0</span>/extract_contexts.py</span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mcaller.orig/extract_contexts.py</span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mcaller/extract_contexts.py</span></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="diff"><span class="p">@@ -2,8 +2,7 @@</span> from collections import defaultdict</span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="diff"> from Bio import SeqIO</span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="diff"> import scipy.stats as ss</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -160,10 +160,10 @@ Index: mcaller-0.0/extract_contexts.py</td>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="diff"> diff_col = [[] for i in range(k)]</span>
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="diff"> sys.exit(0)</span>
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mcaller<span class="idiff left right">-0.0</span>/mCaller.py</span></span>
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mcaller/mCaller.py</span></span>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mcaller<span class="idiff left right">-0.0</span>.orig/mCaller.py</span></span>
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mcaller<span class="idiff left right">-0.0</span>/mCaller.py</span></span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mcaller.orig/mCaller.py</span></span>
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mcaller/mCaller.py</span></span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="diff"><span class="p">@@ -3,8 +3,8 @@</span></span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="diff"> #Alexa McIntyre, 2016-2018</span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="diff"> </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -175,10 +175,10 @@ Index: mcaller-0.0/mCaller.py</td>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="diff"> #import _pickle as cPickle</span>
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="diff"> from collections import defaultdict</span>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="diff"> import numpy as np</span>
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mcaller<span class="idiff left right">-0.0</span>/train_model.py</span></span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mcaller/train_model.py</span></span>
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC180" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mcaller<span class="idiff left right">-0.0</span>.orig/train_model.py</span></span>
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181
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mcaller<span class="idiff left right">-0.0</span>/train_model.py</span></span>
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mcaller.orig/train_model.py</span></span>
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mcaller/train_model.py</span></span>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="diff"><span class="p">@@ -1,5 +1,4 @@</span></span>
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-import cPickle</span></span>
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#import _pickle as cPickle</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -217,3 +217,13 @@ Index: mcaller-0.0/train_model.py</td>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="diff"> modfi.close()</span>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="diff"> return models</span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mcaller/plotlib.py</span></span>
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mcaller.orig/plotlib.py</span></span>
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mcaller/plotlib.py</span></span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="diff"> import sys</span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="diff"> import os</span>
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="diff"> import matplotlib.pyplot as plt</span></pre>
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<a href="https://salsa.debian.org/med-team/mcaller/-/compare/5116e888737a0c7c7e949822a115c456f7a31abd...51ab9f3890c5f27fb1351c333905ab2b8dc5b09a#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,21 +2,29 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">DH_VERBOSE := 1</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">export LC_ALL=C.UTF-8</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">UVERSION=`head -n1 debian/changelog |cut -f1 -d- | cut -f2 -d'(' `</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">include /usr/share/dpkg/default.mk</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dh $@ --with python3</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dh_auto_build</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> help2man ./mCaller.py --version-string=$(UVERSION) --no-info > debian/mCaller.1</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> help2man ./make_bed.py --version-string=$(UVERSION) --no-info > debian/make_bed.1</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> help2man ./compare_genomes.py --version-string=$(UVERSION) --no-info > debian/compare_genomes.1</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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11
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">override_dh_auto_test:</span>
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12
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> ./mCaller.py -p testdata/test_positions_A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq<span class="idiff left right"> </span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> ./mCaller.py -p testdata/test_positions_m6A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> #./make_bed.py -f testdata/masonread1.eventalign.diffs.6 -d 1 -m 0.5<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> ./mCaller.py -p testdata/test_positions_A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> ./mCaller.py -p testdata/test_positions_m6A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> #./make_bed.py -f testdata/masonread1.eventalign.diffs.6 -d 1 -m 0.5</span>
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16
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> ./mCaller.py -p testdata/test_positions.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -t 4 --train -f testdata/masonread1.fastq</span>
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17
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">endif</span>
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18
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"></span>
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19
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26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">override_dh_auto_clean:</span>
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20
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> dh_auto_clean</span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> rm -f model_NN_6_m6A.pkl</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> rm -f model_NN_6_m6A.pkl<span class="idiff left right"> testdata/masonread1.eventalign.diffs.6 testdata/masonread1.eventalign.diffs.6.train</span></span>
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22
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29
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> rm -rf __pycache__</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> rm -f debian/*.1</span></pre>
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<a href="https://salsa.debian.org/med-team/mcaller/-/compare/5116e888737a0c7c7e949822a115c456f7a31abd...51ab9f3890c5f27fb1351c333905ab2b8dc5b09a#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-e</span></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="shell"></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span><span class="c" style="color: #998; font-style: italic;"><span class="idiff left right">#PACKAGENAME#</span></span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span><span class="idiff left right">mcaller</span></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"></span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">LC_ALL</span><span class="o" style="font-weight: 600;">=</span>C.UTF-8</span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<a href="https://salsa.debian.org/med-team/mcaller/-/compare/5116e888737a0c7c7e949822a115c456f7a31abd...51ab9f3890c5f27fb1351c333905ab2b8dc5b09a#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Bug-Database: https://github.com/al-mcintyre/mCaller/issues</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Bug-Submit: https://github.com/al-mcintyre/mCaller/issues/new</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> - Author: </span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Title: </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,3 +19,5 @@ Registry:</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> Entry:</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> - Name: bio.tools</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> Entry:</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">Repository: https://github.com/al-mcintyre/mCaller.git</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">Repository-Browse: https://github.com/al-mcintyre/mCaller</span></pre>
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<li id="68ef9f98c01c7eecd4c605cc26048a06f3304b79">
<a href="https://salsa.debian.org/med-team/mcaller/-/compare/5116e888737a0c7c7e949822a115c456f7a31abd...51ab9f3890c5f27fb1351c333905ab2b8dc5b09a#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">version=4</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">opts="mode=git,pretty=0.3+git%cd.%h" \</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> https://github.com/al-mcintyre/mCaller.git HEAD</span></pre>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">#opts="mode=git,pretty=0.3+git%cd.%h" https://github.com/al-mcintyre/mCaller.git HEAD</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%mcaller-$1.tar.gz%" \</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> https://github.com/al-mcintyre/mCaller/tags (?:.*?/)?v?(\d[\d.]*)\.tar\.gz</span></pre>
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<a href="https://salsa.debian.org/med-team/mcaller/-/compare/5116e888737a0c7c7e949822a115c456f7a31abd...51ab9f3890c5f27fb1351c333905ab2b8dc5b09a#65a2ca2587421e6528362bd4dd0d54c52c8aac02"><strong>testdata/masonread1.eventalign.diffs.6</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 13673 CATTAMCAATC 1.1,-0.236666666667,0.28,1.17,-0.02,0.67,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 13861 GCCCGMTATAT -0.53,-2.56,-0.46,-2.09,-5.4,1.05,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14331 TTTTGMGATCC 0.06,-1.6,-3.48,1.365,1.06,3.94,7.05526534938 - m6A</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14352 TCGTGMATGCA 2.98,1.47,-2.14,5.63,1.07,5.135,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14444 TAAAAMAGAGA -0.68,-0.74,-0.585,-0.48,-0.815,-1.08,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14528 ATCAAMCCGAG 4.025,-0.115,-1.02,-0.48,0.173333333333,1.19,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14836 GCTTTMGCAAA -1.37333333333,0.18,-0.613333333333,-1.43,-0.005,-4.32,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 15536 TGCGTMTTCAA -0.1,2.23,-2.058,2.78,-0.68,0.51,7.05526534938 - m6A</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 15630 CTTCCMGCCAC -2.72,-1.03,-0.14,2.625,1.0375,-1.075,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 16154 AGATAMTAAAT -2.38,-1.03,-2.88333333333,-0.59,-4.31,-4.94,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 16209 TCTTAMTAACA -0.3075,4.23,0.88,0.326666666667,-4.165,0.93,7.05526534938 - A</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 16397 GTATTMTCAAT -0.63,-2.97,-0.736666666667,-2.71,-1.12,-3.25111111111,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 16979 AAATGMGATTT -1.44,-5.03,1.445,0.4,-0.588,-0.55,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17243 AGTAGMTTGAT -1.44333333333,-0.02,-0.0366666666667,-0.55,0.64,-2.71,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17283 ACTTAMCCGGT -1.23,-1.635,-0.24,1.10333333333,-2.215,-2.93,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17486 AGCATMTTTAT -0.21,0.075,-1.30833333333,4.15,-0.3,-0.215,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17796 GTTATMTGCAA -1.355,-0.34,-1.86333333333,-1.87,-1.265,-1.22,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17923 GGTAAMAATTT -5.64,-3.6,-5.13,-0.255,0.4,0.73,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18402 GTGACMGTTTT -1.14,0.94,-4.55,2.0,-0.34,-2.71,7.05526534938 - m6A</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18488 GGCTTMTTTTA 1.02,-2.38,0.915,0.05,1.75,0.8875,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18575 GGATGMAAGAA -0.56,-3.505,1.02,-1.55,-0.714,-0.4825,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18804 ATATTMTGCAT 3.49,1.3,-1.495,-2.3,-1.2,-0.62,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18828 TCGTGMAAAAT -1.405,-2.96,-3.1,0.57,-0.433333333333,-1.44,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 20255 AGGCCMTTCAA -2.15,1.885,2.58,-0.36,4.26,-2.4625,7.05526534938 - m6A</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 20591 AATCAMAAGAA 1.485,4.095,-1.12,-0.91,-0.62,1.17,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 21448 TACTTMCCGCA 1.095,0.78,-2.38,1.47,-1.715,-0.828333333333,7.05526534938 - m6A</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 22359 AACTCMAGGTA -3.59,1.85666666667,-0.96,0.0671428571429,0.573333333333,1.21,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 22558 GAAGAMTCAAC 1.005,3.05,3.07,0.4625,0.32,-0.603333333333,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 23402 GGATTMTTTCA -0.19,-1.68,-2.3,0.56,-1.41,1.48,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24474 CTGGAMAAAGC -1.13,-1.67,-1.1,-0.5775,0.42,1.0225,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24629 GGGCCMTTACC 0.005,-0.295,-0.54,3.96,1.47,0.065,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24715 GGTGGMTGAAT 3.255,3.925,0.04,-0.156,-1.01,1.35333333333,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24770 GGTTAMCGCGT -0.08,-1.36666666667,0.84,-0.545,-3.22,-1.53,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 25340 TGTGGMGAAAC -1.74,-2.56,-2.0775,1.84,-0.1,-0.3,7.05526534938 - A</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 25919 AGAACMCTTTC 1.92,2.75,1.59,1.64333333333,1.59,1.27,7.05526534938 - A</span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 13791 GTAAGMTCCCT -0.4066666666666667,1.6099999999999999,-1.6866666666666665,6.67,-4.55,1.775,7.055265349382997 - m6A 0.67</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14329 TTGAGMTCCGC -3.48,1.365,1.06,3.94,1.6,0.98,7.055265349382997 - m6A 0.52</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14827 AACAGMTCTCC -2.38,-2.11,-1.45,-1.4900000000000002,-1.98,0.53,7.055265349382997 - A 0.08</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 15249 GCTTGMTCTCT 0.65,2.7,-3.18,1.41,0.76,3.43,7.055265349382997 - A 0.46</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 19419 CACAGMTCTAC 1.41,-0.9933333333333332,-2.08,-3.42,-1.5650000000000002,-2.332,7.055265349382997 - A 0.12</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 21759 TGGCGMTCCCT -1.502,-2.01,-2.26,0.5433333333333333,-7.57,-3.11,7.055265349382997 - A 0.26</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 22161 CAGCGMTCCGG 2.13,0.7219999999999999,-0.44,-0.08499999999999996,3.9250000000000003,2.86,7.055265349382997 - m6A 0.65</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 23875 GTCCGMTCCGA 6.19,-2.07,0.695,2.71,3.575,3.1566666666666667,7.055265349382997 - A 0.44</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24559 GCTCAMCGGCT -0.53,1.9366666666666665,-1.86,0.58,4.6450000000000005,1.17,7.055265349382997 - m6A 0.77</span></pre>
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<a href="https://salsa.debian.org/med-team/mcaller/-/compare/5116e888737a0c7c7e949822a115c456f7a31abd...51ab9f3890c5f27fb1351c333905ab2b8dc5b09a#2045b9d43c6fe87f31f71cc0133242f290c7f3d4"><strong>testdata/masonread1.eventalign.diffs.6.train</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 13673 CATTAMCAATC 1.1,-0.236666666667,0.28,1.17,-0.02,0.67,7.05526534938</span> - A</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 16979 AAATGMGATTT -1.44,-5.03,1.445,0.4,-0.588,-0.55,7.05526534938 - </span>A</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 20255 AGGCCMTTCAA -2.15,1.885,2.58,-0.36,4.26,-2.4625,7.05526534938</span> - A</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 23402 GGATTMTTTCA -0.19,-1.68,-2.3,0.56,-1.41,1.48,7.05526534938 - </span>A</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 13791 GTAAGMTCCCT -0.406666666667,1.61,-1.68666666667,6.67,-4.55,1.775,7.05526534938 - m6</span>A</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17243 AGTAGMTTGAT -1.44333333333,-0.02,-0.0366666666667,-0.55,0.64,-2.71,7.05526534938</span> - A</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 13861 GCCCGMTATAT -0.53,-2.56,-0.46,-2.09,-5.4,1.05,7.05526534938</span> - A</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 20591 AATCAMAAGAA 1.485,4.095,-1.12,-0.91,-0.62,1.17,7.05526534938</span> - A</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17283 ACTTAMCCGGT -1.23,-1.635,-0.24,1.10333333333,-2.215,-2.93,7.05526534938 - </span>A</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 23875 GTCCGMTCCGA 6.19,-2.07,0.695,2.71,3.575,3.15666666667,7.05526534938 - m6</span>A</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17486 AGCATMTTTAT -0.21,0.075,-1.30833333333,4.15,-0.3,-0.215,7.05526534938 - </span>A</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14329 TTGMGMTCCGC -3.48,1.365,1.06,3.94,1.6,0.98,7.05526534938 - m6</span>A</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14331 TTTTGMGMTCC 0.06,-1.6,-3.48,1.365,1.06,3.94,7.05526534938</span> - A</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14352 TCGTGMATGCA 2.98,1.47,-2.14,5.63,1.07,5.135,7.05526534938</span> - A</span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17796 GTTATMTGCAA -1.355,-0.34,-1.86333333333,-1.87,-1.265,-1.22,7.05526534938</span> - A</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24474 CTGGAMAAAGC -1.13,-1.67,-1.1,-0.5775,0.42,1.0225,7.05526534938</span> - A</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14444 TAAAAMAGAGA -0.68,-0.74,-0.585,-0.48,-0.815,-1.08,7.05526534938</span> - A</span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17923 GGTAAMAATTT -5.64,-3.6,-5.13,-0.255,0.4,0.73,7.05526534938</span> - A</span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 21448 TACTTMCCGCA 1.095,0.78,-2.38,1.47,-1.715,-0.828333333333,7.05526534938</span> - A</span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24559 GCTCAMCGGCT -0.53,1.93666666667,-1.86,0.58,4.645,1.17,7.05526534938 - m6</span>A</span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14528 ATCAAMCCGAG 4.025,-0.115,-1.02,-0.48,0.173333333333,1.19,7.05526534938</span> - A</span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24629 GGGCCMTTACC 0.005,-0.295,-0.54,3.96,1.47,0.065,7.05526534938</span> - A</span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18402 GTGACMGTTTT -1.14,0.94,-4.55,2.0,-0.34,-2.71,7.05526534938</span> - A</span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 21759 TGGCGMTCCCT -1.502,-2.01,-2.26,0.543333333333,-7.57,-3.11,7.05526534938 - m6</span>A</span>
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<td class="diff-line-num old old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24715 GGTGGMTGAAT 3.255,3.925,0.04,-0.156,-1.01,1.35333333333,7.05526534938</span> - A</span>
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<td class="diff-line-num old old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18488 GGCTTMTTTTA 1.02,-2.38,0.915,0.05,1.75,0.8875,7.05526534938</span> - A</span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14827 AACAGMTCTCC -2.38,-2.11,-1.45,-1.49,-1.98,0.53,7.05526534938 - m6</span>A</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24770 GGTTAMCGCGT -0.08,-1.36666666667,0.84,-0.545,-3.22,-1.53,7.05526534938 - </span>A</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 22161 CAGCGMTCCGG 2.13,0.722,-0.44,-0.085,3.925,2.86,7.05526534938 - m6</span>A</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18575 GGATGMAAGAA -0.56,-3.505,1.02,-1.55,-0.714,-0.4825,7.05526534938</span> - A</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14836 GCTTTMGCAAA -1.37333333333,0.18,-0.613333333333,-1.43,-0.005,-4.32,7.05526534938</span> - A</span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 25340 TGTGGMGAAAC -1.74,-2.56,-2.0775,1.84,-0.1,-0.3,7.05526534938 - </span>A</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 15249 GCTTGMTCTCT 0.65,2.7,-3.18,1.41,0.76,3.43,7.05526534938</span> - m6A</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 22359 AACTCMAGGTA -3.59,1.85666666667,-0.96,0.0671428571429,0.573333333333,1.21,7.05526534938</span> - A</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18804 ATATTMTGCAT 3.49,1.3,-1.495,-2.3,-1.2,-0.62,7.05526534938</span> - A</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18828 TCGTGMAAAAT -1.405,-2.96,-3.1,0.57,-0.433333333333,-1.44,7.05526534938</span> - A</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 22558 GAAGAMTCAAC 1.005,3.05,3.07,0.4625,0.32,-0.603333333333,7.05526534938 - </span>A</span>
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38
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 25919 AGAACMCTTTC 1.92,2.75,1.59,1.64333333333,1.59,1.27,7.05526534938</span> - A</span>
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39
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 15536 TGCGTMTTCAA -0.1,2.23,-2.058,2.78,-0.68,0.51,7.05526534938 - </span>A</span>
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40
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 15630 CTTCCMGCCAC -2.72,-1.03,-0.14,2.625,1.0375,-1.075,7.05526534938</span> - A</span>
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41
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 19419 CACAGMTCTAC 1.41,-0.993333333333,-2.08,-3.42,-1.565,-2.332,7.05526534938 - m6</span>A</span>
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42
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 16154 AGATAMTAAAT -2.38,-1.03,-2.88333333333,-0.59,-4.31,-4.94,7.05526534938</span> - A</span>
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43
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 16209 TCTTAMTAACA -0.3075,4.23,0.88,0.326666666667,-4.165,0.93,7.05526534938</span> - A</span>
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44
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"><span class="idiff left right">26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 16397 GTATTMTCAAT -0.63,-2.97,-0.736666666667,-2.71,-1.12,-3.25111111111,7.05526534938</span> - A</span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 13673 CATTAMCAATC 1.1,-0.23666666666666666,0.28,1.17,-0.02,0.6699999999999999,7.055265349382997</span> - A</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 13791 GTAAGMTCCCT -0.4066666666666667,1.6099999999999999,-1.6866666666666665,6.67,-4.55,1.775,7.055265349382997 - m6</span>A</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 13861 GCCCGMTATAT -0.53,-2.56,-0.45999999999999996,-2.09,-5.4,1.05,7.055265349382997</span> - A</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14329 TTGMGMTCCGC -3.48,1.365,1.06,3.94,1.6,0.98,7.055265349382997 - m6</span>A</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14331 TTTTGMGMTCC 0.06,-1.5999999999999999,-3.48,1.365,1.06,3.94,7.055265349382997 - </span>A</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14352 TCGTGMATGCA 2.98,1.47,-2.14,5.63,1.07,5.135,7.055265349382997</span> - A</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14444 TAAAAMAGAGA -0.68,-0.74,-0.585,-0.48,-0.815,-1.08,7.055265349382997</span> - A</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14528 ATCAAMCCGAG 4.0249999999999995,-0.11499999999999999,-1.02,-0.48,0.17333333333333337,1.19,7.055265349382997</span> - A</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14827 AACAGMTCTCC -2.38,-2.11,-1.45,-1.4900000000000002,-1.98,0.53,7.055265349382997 - m6</span>A</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 14836 GCTTTMGCAAA -1.3733333333333333,0.17999999999999994,-0.6133333333333334,-1.43,-0.0050000000000000044,-4.32,7.055265349382997 - </span>A</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 15249 GCTTGMTCTCT 0.65,2.7,-3.18,1.41,0.76,3.43,7.055265349382997 - m6</span>A</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 15536 TGCGTMTTCAA -0.1,2.23,-2.058,2.78,-0.68,0.51,7.055265349382997 - </span>A</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 15630 CTTCCMGCCAC -2.7199999999999998,-1.03,-0.14,2.625,1.0375,-1.075,7.055265349382997</span> - A</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 16154 AGATAMTAAAT -2.38,-1.03,-2.8833333333333333,-0.59,-4.31,-4.94,7.055265349382997</span> - A</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 16209 TCTTAMTAACA -0.3075,4.23,0.88,0.32666666666666666,-4.165,0.93,7.055265349382997</span> - A</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 16397 GTATTMTCAAT -0.63,-2.97,-0.7366666666666667,-2.71,-1.1199999999999999,-3.251111111111111,7.055265349382997</span> - A</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 16979 AAATGMGATTT -1.44,-5.03,1.4449999999999998,0.4000000000000001,-0.588,-0.55,7.055265349382997</span> - A</span>
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17243 AGTAGMTTGAT -1.4433333333333334,-0.020000000000000018,-0.0366666666666667,-0.5499999999999999,0.64,-2.71,7.055265349382997</span> - A</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17283 ACTTAMCCGGT -1.23,-1.635,-0.24,1.1033333333333333,-2.215,-2.93,7.055265349382997</span> - A</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17486 AGCATMTTTAT -0.21,0.07500000000000001,-1.3083333333333333,4.15,-0.3,-0.21500000000000002,7.055265349382997 - </span>A</span>
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17796 GTTATMTGCAA -1.355,-0.34,-1.8633333333333333,-1.87,-1.2650000000000001,-1.22,7.055265349382997</span> - A</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 17923 GGTAAMAATTT -5.64,-3.6,-5.13,-0.255,0.4,0.73,7.055265349382997</span> - A</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18402 GTGACMGTTTT -1.1400000000000001,0.94,-4.55,2.0,-0.34,-2.71,7.055265349382997</span> - A</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18488 GGCTTMTTTTA 1.02,-2.38,0.915,0.05,1.75,0.8875000000000001,7.055265349382997 - </span>A</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18575 GGATGMAAGAA -0.56,-3.505,1.02,-1.55,-0.7139999999999999,-0.4825,7.055265349382997</span> - A</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18804 ATATTMTGCAT 3.49,1.3,-1.4949999999999999,-2.3,-1.2,-0.62,7.055265349382997</span> - A</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 18828 TCGTGMAAAAT -1.405,-2.96,-3.1,0.5699999999999998,-0.43333333333333335,-1.44,7.055265349382997 - </span>A</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 19419 CACAGMTCTAC 1.41,-0.9933333333333332,-2.08,-3.42,-1.5650000000000002,-2.332,7.055265349382997 - m6</span>A</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 20255 AGGCCMTTCAA -2.15,1.8849999999999998,2.58,-0.36,4.26,-2.4625,7.055265349382997 - </span>A</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 20591 AATCAMAAGAA 1.485,4.095000000000001,-1.12,-0.91,-0.62,1.17,7.055265349382997</span> - A</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 21448 TACTTMCCGCA 1.095,0.78,-2.38,1.47,-1.7149999999999999,-0.8283333333333335,7.055265349382997</span> - A</span>
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<td class="diff-line-num new new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 21759 TGGCGMTCCCT -1.502,-2.01,-2.26,0.5433333333333333,-7.57,-3.11,7.055265349382997 - m6</span>A</span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 22161 CAGCGMTCCGG 2.13,0.7219999999999999,-0.44,-0.08499999999999996,3.9250000000000003,2.86,7.055265349382997</span> - m6A</span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 22359 AACTCMAGGTA -3.59,1.8566666666666667,-0.9600000000000001,0.06714285714285717,0.5733333333333334,1.21,7.055265349382997</span> - A</span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 22558 GAAGAMTCAAC 1.0050000000000001,3.05,3.07,0.46249999999999997,0.32,-0.6033333333333334,7.055265349382997</span> - A</span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 23402 GGATTMTTTCA -0.18999999999999992,-1.6799999999999997,-2.3,0.56,-1.41,1.48,7.055265349382997</span> - A</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 23875 GTCCGMTCCGA 6.19,-2.07,0.695,2.71,3.575,3.1566666666666667,7.055265349382997 - m6</span>A</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24474 CTGGAMAAAGC -1.1300000000000001,-1.67,-1.1,-0.5774999999999999,0.42,1.0225,7.055265349382997</span> - A</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24559 GCTCAMCGGCT -0.53,1.9366666666666665,-1.86,0.58,4.6450000000000005,1.17,7.055265349382997 - m6</span>A</span>
</pre>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24629 GGGCCMTTACC 0.0050000000000000044,-0.29500000000000004,-0.54,3.96,1.47,0.06499999999999995,7.055265349382997</span> - A</span>
</pre>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24715 GGTGGMTGAAT 3.255,3.925,0.03999999999999998,-0.15599999999999997,-1.01,1.3533333333333333,7.055265349382997 - </span>A</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 24770 GGTTAMCGCGT -0.07999999999999996,-1.3666666666666665,0.84,-0.5449999999999999,-3.22,-1.53,7.055265349382997</span> - A</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 25340 TGTGGMGAAAC -1.74,-2.56,-2.0774999999999997,1.84,-0.09999999999999998,-0.3,7.055265349382997</span> - A</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"><span class="idiff left right">ecoli 26dd376e-9d82-41fc-921e-71e559c8e8d1_Basecall_2D_template 25919 AGAACMCTTTC 1.92,2.75,1.59,1.6433333333333333,1.59,1.27,7.055265349382997</span> - A</span></pre>
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