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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/pftools">Debian Med / pftools</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pftools/-/commit/91e9e35a1a32e329f0c301c60fdc9939606edead">91e9e35a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-03T15:17:00+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.2.6</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#c335a27a082cc8d17dd36dc0eda3086cb0c9baaa">
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+
INSTALL
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<li class="file-stats">
<a href="#33a08aca934f37c2d0beb1888a2a6794fe9b0219">
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+
src/C/config.h.cmake
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<h4>Changes:</h4>
<li id="c335a27a082cc8d17dd36dc0eda3086cb0c9baaa">
<a href="https://salsa.debian.org/med-team/pftools/-/commit/91e9e35a1a32e329f0c301c60fdc9939606edead#c335a27a082cc8d17dd36dc0eda3086cb0c9baaa"><strong>INSTALL</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">REQUIREMENTS</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">------------</span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">- 64bit processors</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">- cmake >= 3.7</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">- gcc >= 4.6</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">- gfortran (or g77 or f77) for release 2.3 source code</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">- perl >= 5.5.3 for ps_scan.pl</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Optional:</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">- pcre*</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">- GD*</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">- libpng</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">- libjpeg</span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">- zlib</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">- libharu* (hpdf)</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">* copy of the source code is provided and could be used during build, if requested.</span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">INSTALLATION</span>
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">------------</span>
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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">In order to compile the programs, type:</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">BUILD:</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> git clone https://github.com/sib-swiss/pftools3.git</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> cd pftools3</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> mkdir build</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> cd build/</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> cmake ..</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"></span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> OPTIONS:</span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> - Build static binaries:</span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> cmake -DSTANDALONE=ON ..</span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> - Build a version using 32bits integers to represent profile matrix values</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> instead of default 16bits (less problems with low/negative cutoff values,</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> might be slower & use more memory):</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> cmake -DUSE_32BIT_INTEGER=ON ..</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"></span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> - Change installation prefix:</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> cmake -DCMAKE_INSTALL_PREFIX:PATH=<INSTALL PATH> ..</span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"></span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> - Compile C only code (version 3 only):</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> cmake -DC_ONLY=ON ..</span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"></span>
</pre>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> - Compile with graphical support for pfcalibrateV3 (highly optional):</span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> cmake -DUSE_GRAPHICS=ON -DUSE_PDF=ON ..</span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"></span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> - Compile without regular expression support:</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> cmake -DUSE_PCRE=OFF ..</span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> ...</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> example:</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> cmake -DC_ONLY=ON -DUSE_32BIT_INTEGER=ON -DUSE_PCRE=OFF ..</span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"></span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"></span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">COMPILE:</span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> make</span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext">This will create the binaries. To install the</span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext">binaries and the corresponding manual pages type:</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext">INSTALL (see above to change install path):</span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> make install</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext">CHECK/TEST:</span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> make test</span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"></span></pre>
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<a href="https://salsa.debian.org/med-team/pftools/-/commit/91e9e35a1a32e329f0c301c60fdc9939606edead#33a08aca934f37c2d0beb1888a2a6794fe9b0219"><strong>src/C/config.h.cmake</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#ifndef _CONFIG_H</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#define _CONFIG_H</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="cmake">/*</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="cmake"> ********************************************************************************</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="cmake"> * SPECIFIC ARCHITECTURE</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="cmake"> ********************************************************************************</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="cmake"> */</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#cmakedefine USE_WINAPI</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#ifdef USE_WINAPI</span></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#define __USE_WINAPI__</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#endif</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="cmake"></span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#cmakedefine USE_AFFINITY</span></span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#if defined(USE_AFFINITY)</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># if defined(__GNUC__) && !defined(USE_WINAPI)</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># define _GNU_SOURCE</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># endif</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#endif</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="cmake"></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="cmake">/*</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="cmake"> ********************************************************************************</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="cmake"> * Math Library</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="cmake"> ********************************************************************************</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="cmake"> */</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#ifdef __INTEL_COMPILER</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># include <mathimf.h></span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#elif __IBMC__</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># include <math.h></span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># include <mass.h></span></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#else</span></span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># include <math.h></span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#endif</span></span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="cmake"></span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="cmake">/*</span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="cmake"> ********************************************************************************</span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="cmake"> * ALLOCA header file</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="cmake"> ********************************************************************************</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="cmake"> */</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#cmakedefine HAVE_ALLOCA_H</span></span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#if !defined(HAVE_ALLOCA_H) && defined(__GNUC__)</span></span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="cmake">/* This is not defined in MinGW */</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#define alloca __builtin_alloca</span></span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#endif</span></span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="cmake"></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="cmake">/*</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="cmake"> ********************************************************************************</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="cmake"> * MM_MALLOC header file</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="cmake"> ********************************************************************************</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="cmake"> */</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#cmakedefine HAVE_MM_MALLOC_H 1</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#ifdef HAVE_MM_MALLOC_H</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># include <mm_malloc.h></span></span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#else</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#include <stdlib.h></span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="cmake">/* We can't depend on <stdlib.h> since the prototype of posix_memalign</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="cmake"> may not be visible. */</span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#ifndef __cplusplus</span></span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="cmake">extern int <span class="nf" style="color: #900; font-weight: 600;">posix_memalign</span> <span class="p">(</span>void **, size_t, size_t<span class="p">)</span>;</span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#else</span></span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="cmake">extern <span class="s2" style="color: #d14;">"C"</span> int <span class="nf" style="color: #900; font-weight: 600;">posix_memalign</span> <span class="p">(</span>void **, size_t, size_t<span class="p">)</span> <span class="nf" style="color: #900; font-weight: 600;">throw</span> <span class="p">()</span>;</span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#endif</span></span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="cmake"></span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="cmake">static inline void * __ALWAYS_INLINE</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="cmake"><span class="nf" style="color: #900; font-weight: 600;">_mm_malloc</span> <span class="p">(</span>size_t size, size_t alignment<span class="p">)</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="cmake">{</span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="cmake"> void *ptr;</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="cmake"> <span class="nb" style="color: #0086b3;">if</span> <span class="p">(</span>alignment == 1<span class="p">)</span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="cmake"> return <span class="nf" style="color: #900; font-weight: 600;">malloc</span> <span class="p">(</span>size<span class="p">)</span>;</span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="cmake"> <span class="nb" style="color: #0086b3;">if</span> <span class="p">(</span>alignment == 2 || <span class="p">(</span><span class="nf" style="color: #900; font-weight: 600;">sizeof</span> <span class="p">(</span>void *<span class="p">)</span> == 8 && alignment == 4<span class="p">))</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="cmake"> alignment = <span class="nf" style="color: #900; font-weight: 600;">sizeof</span> <span class="p">(</span>void *<span class="p">)</span>;</span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="cmake"> <span class="nb" style="color: #0086b3;">if</span> <span class="p">(</span><span class="nf" style="color: #900; font-weight: 600;">posix_memalign</span> <span class="p">(</span>&ptr, alignment, size<span class="p">)</span> == 0<span class="p">)</span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="cmake"> return ptr;</span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="cmake"> else</span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="cmake"> return NULL;</span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="cmake">}</span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="cmake"></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="cmake">static inline void __ALWAYS_INLINE</span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="cmake"><span class="nf" style="color: #900; font-weight: 600;">_mm_free</span> <span class="p">(</span>void * ptr<span class="p">)</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="cmake">{</span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="cmake"> <span class="nf" style="color: #900; font-weight: 600;">free</span> <span class="p">(</span>ptr<span class="p">)</span>;</span>
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="cmake">}</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#endif</span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="cmake"></span>
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<td class="diff-line-num new new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="cmake">/*</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="cmake"> ********************************************************************************</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="cmake"> * Haru PDF Library</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="cmake"> ********************************************************************************</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
88
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC88" class="line" lang="cmake"> */</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#cmakedefine USE_PDF</span></span>
</pre>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="cmake"></span>
</pre>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="cmake">/*</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="cmake"> ********************************************************************************</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="cmake"> * GD Library</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="cmake"> ********************************************************************************</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="cmake"> */</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#cmakedefine USE_GD</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="cmake"></span>
</pre>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="cmake">/*</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="cmake"> ********************************************************************************</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="cmake"> * PLplot Library</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="cmake"> ********************************************************************************</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
102
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC102" class="line" lang="cmake"> */</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#cmakedefine USE_PLPLOT</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="cmake"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
105
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC105" class="line" lang="cmake">/*</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="cmake"> ********************************************************************************</span>
</pre>
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="cmake"> * Mapping database to memory or opening it through libC</span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="cmake"> ********************************************************************************</span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="cmake"> */</span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#cmakedefine USE_MMAP</span></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#ifndef USE_MMAP</span></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># undef __USE_MMAP__</span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># define SETUP_DATABASE_ACCESS(fileoraddress) FILE* inSequence = fopen((fileoraddress), "r")</span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># define GET_DATABASE_SEQUENCE(dest, offsets, id) ReadSequenceIndex((dest), (size_t) (id), inSequence, (offsets))</span></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># define UNSET_DATABASE_ACCESS() fclose(inSequence)</span></span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#else</span></span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># include <sys/mman.h></span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># define __USE_MMAP__</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># define SETUP_DATABASE_ACCESS(fileoraddress) const char * const restrict SequenceFileMap = (fileoraddress);</span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># ifndef MMAP_DEBUG</span></span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># define GET_DATABASE_SEQUENCE(dest, offsets) MMAP_ReadSequenceIndex((dest), SequenceFileMap, (offsets), 0)</span></span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># else</span></span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># define GET_DATABASE_SEQUENCE(dest, offsets) MMAP_ReadSequenceIndex((dest), SequenceFileMap, (offsets), 0\</span></span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="cmake"> ,<span class="p">((</span>struct ThreadData*<span class="p">)</span> _Data<span class="p">)</span>->threadId, 0, *<span class="p">(((</span>struct ThreadData*<span class="p">)</span> _Data<span class="p">)</span>->maplength<span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># endif</span></span>
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># define UNSET_DATABASE_ACCESS()</span></span>
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#endif</span></span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="cmake"></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="cmake">/*</span>
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="cmake"> ********************************************************************************</span>
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<td class="diff-line-num new new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="cmake"> * PfTools versioning</span>
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<td class="diff-line-num new new_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="cmake"> ********************************************************************************</span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="cmake"> */</span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#define PF_VERSION "${VERSION}"</span></span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#define PF_MAJOR_VERSION ${MAJOR_VERSION}</span></span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#define PF_MINOR_VERSION ${MINOR_VERSION}</span></span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="cmake"></span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="cmake">/*</span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="cmake"> ********************************************************************************</span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="cmake"> * Executable build using inline functions</span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="cmake"> ********************************************************************************</span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="cmake"> */</span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#ifndef BUILD_LIBRARY</span></span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#define __USE_INLINE_FUNCTIONS__</span></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#endif</span></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;">#endif /* _CONFIG_H */</span></span></pre>
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