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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/librostlab-blast">Debian Med / librostlab-blast</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/librostlab-blast/-/commit/1df7072a05d71f122f4bb0348bc993bd08cd7516">1df7072a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-04T23:19:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/librostlab-blast/-/commit/8cf5bc2776cab0118d735b53ec32b0346bfa2d10">8cf5bc27</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-04T23:19:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/librostlab-blast/-/commit/63ac2236fa3f90d3183a39720775a27b1124f2b3">63ac2236</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-04T23:20:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Secure URI in copyright format
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/librostlab-blast/-/commit/084e7200f245ff6bf4ab3da163930603ba09a922">084e7200</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-04T23:20:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/librostlab-blast/-/commit/d78c1b96db79cee334b2ff80d63a0b6cec092693">d78c1b96</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-04T23:20:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/librostlab-blast/-/commit/f0976827ba268e7d02bc88e7dae97bfdcc993b1e">f0976827</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-04T23:20:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/librostlab-blast/-/commit/40be610c4c045171efbe6da5470fa3ea4b7c6325">40be610c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-04T23:20:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/librostlab-blast/-/commit/83643253b14f6a568681067ee0e2dc58fda1908c">83643253</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-04T23:20:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use secure URI in Homepage field.
Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/librostlab-blast/-/commit/f56c37c2740bbd43e09cc799987dc0de0c880737">f56c37c2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-04T23:20:07+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Submit (from ./configure).
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-file-is-missing
See-also: https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/librostlab-blast/-/commit/20e58b93afe45009396552750f809ff44e2a39d1">20e58b93</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-04T23:20:07+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.
Changes-By: lintian-brush
Fixes: lintian: uses-deprecated-adttmp
See-also: https://lintian.debian.org/tags/uses-deprecated-adttmp.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/librostlab-blast/-/commit/b094d63543f34d9ea1ad0f0004ba46ca367e5aac">b094d635</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-04T23:29:14+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">dh_missing --fail-missing friendly installation
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/librostlab-blast/-/commit/ba910fcfeeefefe05480533d46b5f490ecace13f">ba910fcf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-04T23:35:31+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add autopkgtest error as TODO
</pre>
</li>
</ul>
<h4>9 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#12f30f7d1bb9f5f99fe1a9dcff6ec1913e797d86">
debian/librostlab-blast0-dev.examples
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#17d8869115f55e024a85a6d17443302815985358">
debian/tests/installation-test
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<span class="new-file">
+
debian/upstream/metadata
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/librostlab-blast/-/compare/eb2f017790bc2a94feca45ab81c4bbb90d4e2b5c...ba910fcfeeefefe05480533d46b5f490ecace13f#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">librostlab-blast (1.0.1-11) UNRELEASED; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Standards-Version: 4.5.1 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Secure URI in copyright format (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Remove trailing whitespace in debian/changelog (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Remove trailing whitespace in debian/copyright (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Use secure URI in Homepage field.</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Submit (from ./configure).</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * dh_missing --fail-missing friendly installation</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> TODO:</span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">autopkgtest [22:31:34]: test installation-test: [-----------------------</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Compile and run...</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">In file included from parseblast.cpp:2:</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">/usr/include/rostlab/blast-parser-driver.h:61:12: error: ‘enum rostlab::blast::parser::token::token_kind_type’ is not a class or namespace</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> 61 | friend YY_DECL_FRIEND;</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> | ^~~~~~~~~~~~~~</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">autopkgtest [22:31:35]: test installation-test: -----------------------]</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">autopkgtest [22:31:35]: test installation-test: - - - - - - - - - - results - - - - - - - - - -</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">installation-test FAIL non-zero exit status 1</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">autopkgtest [22:31:35]: test installation-test: - - - - - - - - - - stderr - - - - - - - - - -</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">In file included from parseblast.cpp:2:</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">/usr/include/rostlab/blast-parser-driver.h:61:12: error: ‘enum rostlab::blast::parser::token::token_kind_type’ is not a class or namespace</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> 61 | friend YY_DECL_FRIEND;</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> | ^~~~~~~~~~~~~~</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">autopkgtest [22:31:35]: @@@@@@@@@@@@@@@@@@@@ summary</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">installation-test FAIL non-zero exit status 1</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 04 Dec 2020 23:19:53 +0100</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">librostlab-blast (1.0.1-10) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> * Do not render PDF documentation any more since its not really important</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -108,7 +142,7 @@ librostlab-blast (1.0.0-3) unstable; urgency=low</td>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext">librostlab-blast (1.0.0-2) unstable; urgency=low</span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="plaintext"> * Added missing librostlab3-dev dependency to librostlab-blast0-dev.<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext"> * Added missing librostlab3-dev dependency to librostlab-blast0-dev.</span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> * Mention libzerg in package description.</span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> -- Laszlo Kajan <lkajan@rostlab.org> Wed, 04 Apr 2012 10:57:21 +0200</span>
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<a href="https://salsa.debian.org/med-team/librostlab-blast/-/compare/eb2f017790bc2a94feca45ab81c4bbb90d4e2b5c...ba910fcfeeefefe05480533d46b5f490ecace13f#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<a href="https://salsa.debian.org/med-team/librostlab-blast/-/compare/eb2f017790bc2a94feca45ab81c4bbb90d4e2b5c...ba910fcfeeefefe05480533d46b5f490ecace13f#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,7 +4,7 @@ Uploaders: Laszlo Kajan <lkajan@rostlab.org>,</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 11~</span>),</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 13</span>),</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> d-shlibs,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> bison,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> doxygen,</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,10 +14,11 @@ Build-Depends: debhelper (>= 11~),</td>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> librostlab-dev,</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> texlive-fonts-recommended,</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> texlive-latex-extra</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">3.0</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5.1</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/librostlab-blast</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/librostlab-blast.git</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext">Homepage: http://rostlab.org/</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">Homepage: https://rostlab.org/</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Package: librostlab-blast0v5</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Architecture: any</span>
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<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/librostlab-blast/-/compare/eb2f017790bc2a94feca45ab81c4bbb90d4e2b5c...ba910fcfeeefefe05480533d46b5f490ecace13f#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Format: http<span class="idiff left right">s</span>://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: librostlab-blast</span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Upstream-Contact: Laszlo Kajan <lkajan@rostlab.org></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Source: http://rostlab.org/</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,12 +16,12 @@ License: GPL-3+</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> it under the terms of the GNU General Public License as published by</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> the Free Software Foundation, either version 3 of the License, or</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> (at your option) any later version.</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> .<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> This program is distributed in the hope that it will be useful,</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> GNU General Public License for more details.</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> .<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> You should have received a copy of the GNU General Public License</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> along with this program. If not, see <http://www.gnu.org/licenses/>.</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> .</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -33,12 +33,12 @@ License: LGPL-3+</td>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> it under the terms of the GNU Lesser General Public License as published by</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> the Free Software Foundation, either version 3 of the License, or</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> (at your option) any later version.</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> .<span class="idiff left right"> </span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> This package is distributed in the hope that it will be useful,</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> GNU Lesser General Public License for more details.</span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> .<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> You should have received a copy of the GNU Lesser General Public License</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> along with this program. If not, see <http://www.gnu.org/licenses/>.</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> .</span>
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<a href="https://salsa.debian.org/med-team/librostlab-blast/-/compare/eb2f017790bc2a94feca45ab81c4bbb90d4e2b5c...ba910fcfeeefefe05480533d46b5f490ecace13f#12f30f7d1bb9f5f99fe1a9dcff6ec1913e797d86"><strong>debian/librostlab-blast0-dev.examples</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">examples/parseblast.cpp</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">examples/converged.ali</span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">usr/share/doc/librostlab-blast/examples/*</span></pre>
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<a href="https://salsa.debian.org/med-team/librostlab-blast/-/compare/eb2f017790bc2a94feca45ab81c4bbb90d4e2b5c...ba910fcfeeefefe05480533d46b5f490ecace13f#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,6 +17,7 @@ override_dh_install:</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> --v5 \</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> --movedev debian/tmp/usr/include/* usr/include \</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> debian/tmp/usr/lib/*/*.so</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> find debian -name "lib*.la" -delete</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">override_dh_auto_configure:</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf=No</span>
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<a href="https://salsa.debian.org/med-team/librostlab-blast/-/compare/eb2f017790bc2a94feca45ab81c4bbb90d4e2b5c...ba910fcfeeefefe05480533d46b5f490ecace13f#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<a href="https://salsa.debian.org/med-team/librostlab-blast/-/compare/eb2f017790bc2a94feca45ab81c4bbb90d4e2b5c...ba910fcfeeefefe05480533d46b5f490ecace13f#17d8869115f55e024a85a6d17443302815985358"><strong>debian/tests/installation-test</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,12 +6,12 @@ set -e</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span>librostlab-blast0-dev</span>
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8
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="shell"></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$A<span class="idiff left right">DT</span>TMP</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">A<span class="idiff left right">DT</span>TMP</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="si" style="color: #d14;">)</span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="nv" style="color: #008080;">$A<span class="idiff left right">DT</span>TMP</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$A<span class="idiff left right">UTOPKGTEST_</span>TMP</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">A<span class="idiff left right">UTOPKGTEST_</span>TMP</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="si" style="color: #d14;">)</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="nv" style="color: #008080;">$A<span class="idiff left right">UTOPKGTEST_</span>TMP</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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13
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$A<span class="idiff left right">DT</span>TMP</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$A<span class="idiff left right">UTOPKGTEST_</span>TMP</span></span>
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15
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"></span>
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> /usr/share/doc/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/examples/<span class="k" style="font-weight: 600;">*</span> <span class="nb" style="color: #0086b3;">.</span></span>
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell">find <span class="nb" style="color: #0086b3;">.</span> <span class="nt" style="color: #000080;">-type</span> f <span class="nt" style="color: #000080;">-name</span> <span class="s2" style="color: #d14;">"*.gz"</span> <span class="nt" style="color: #000080;">-exec</span> <span class="nb" style="color: #0086b3;">gunzip</span> <span class="se" style="color: #d14;">\{\}</span> <span class="se" style="color: #d14;">\;</span></span>
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<a href="https://salsa.debian.org/med-team/librostlab-blast/-/compare/eb2f017790bc2a94feca45ab81c4bbb90d4e2b5c...ba910fcfeeefefe05480533d46b5f490ecace13f#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">---</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Bug-Submit: https://rostlab.org/cgi-bin/bugzilla3/enter_bug.cgi?product=librostlab-blast</span></pre>
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