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GitLab

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<h3>

Andreas Tille pushed to branch master

at <a href="https://salsa.debian.org/med-team/resfinder">Debian Med / resfinder</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/resfinder/-/commit/352027b4b971b9da9c366d0727adfe3947aa06d9">352027b4</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2020-12-04T22:44:23+01:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Install Python modules

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/resfinder/-/commit/181976df1ec4c9c8befb6e1113ae46b9a32f472b">181976df</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2020-12-04T23:10:32+01:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set path in testscript, do not install trash

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/resfinder/-/commit/8d0a15ddfb407533d58232c3f8ad50920a10bb18">8d0a15dd</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2020-12-04T23:12:12+01:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix syntax

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/resfinder/-/commit/5dfddc299f3f20dbf1650934eb4baa79e5303652">5dfddc29</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2020-12-04T23:33:18+01:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Work arround not-executable test script

</pre>

</li>

</ul>

<h4>7 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">

debian/changelog

</a>

</li>

<li class="file-stats">

<a href="#ec652e8376061ebabed8d52721e18a890f9131a7">

<span class="new-file">

+

debian/patches/fix_path_in_testscript.patch

</span>

</a>

</li>

<li class="file-stats">

<a href="#9ffbea523f68ec2af6eb4481d50c985a8295dcf1">

<span class="new-file">

+

debian/patches/fix_syntax.patch

</span>

</a>

</li>

<li class="file-stats">

<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">

<span class="new-file">

+

debian/patches/series

</span>

</a>

</li>

<li class="file-stats">

<a href="#e63263210b9156ba404e775f941345f7b4dc919c">

debian/resfinder.install

</a>

</li>

<li class="file-stats">

<a href="#8756c63497c8dc39f7773438edf53b220c773f67">

debian/rules

</a>

</li>

<li class="file-stats">

<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">

debian/tests/run-unit-test

</a>

</li>

</ul>

<h4>Changes:</h4>

<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">

<a href="https://salsa.debian.org/med-team/resfinder/-/compare/19f0c5e316810b942e7cd24f3ad95d09550b95a3...5dfddc299f3f20dbf1650934eb4baa79e5303652#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>

<hr>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,8 +3,6 @@ resfinder (4.0.1-1) UNRELEASED; urgency=medium</td>

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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3

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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3

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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">  * New upstream version</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

4

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4

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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">  * debhelper-compat 13 (routine-update)</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

5

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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

5

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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">  * resfinder.py is now run_resfinder.py</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

6

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<td class="diff-line-num new_line old" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">  TODO: No idea how to properly test the package, asked upstream in</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

7

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<td class="diff-line-num new_line old" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">        https://bitbucket.org/genomicepidemiology/resfinder/issues/31/how-to-properly-test-resfinder</span>

</pre>

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8

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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

6

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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>

</pre>

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9

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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org>  Sat, 03 Oct 2020 12:00:25 +0200</span>

</pre>

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10

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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

8

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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>

</pre>

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<br>

</li>

<li id="ec652e8376061ebabed8d52721e18a890f9131a7">

<a href="https://salsa.debian.org/med-team/resfinder/-/compare/19f0c5e316810b942e7cd24f3ad95d09550b95a3...5dfddc299f3f20dbf1650934eb4baa79e5303652#ec652e8376061ebabed8d52721e18a890f9131a7"><strong>debian/patches/fix_path_in_testscript.patch</strong></a>

<hr>

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Sat, 03 Oct 2020 12:00:25 +0200</span></span>

</pre>

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3

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: run_resfinder.py is in PATH</span></span>

</pre>

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4

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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/tests/functional_tests.py</span>

</pre>

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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/functional_tests.py</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -70,7 +70,7 @@</span> class ResFinderRunTest(unittest.TestCase</span>

</pre>

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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff">         # She therefore runs resfinder cmd line.</span>

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> </span>

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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff">         # First Maria checks out the documentation.</span>

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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-        procs = run("python3 ../run_resfinder.py -h", shell=True, stdout=PIPE,</span></span>

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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+        procs = run("run_resfinder.py -h", shell=True, stdout=PIPE,</span></span>

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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff">                     check=True)</span>

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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff">         output = procs.stdout.decode()</span>

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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff">         self.assertIn("--help", output)</span>

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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="p">@@ -81,7 +81,7 @@</span> class ResFinderRunTest(unittest.TestCase</span>

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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff">         test1_dir = run_test_dir + "/" + test_names[0]</span>

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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff">         os.makedirs(test1_dir)</span>

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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff">         # Then she runs run_resfinder with her first isolate.</span>

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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-        cmd_acquired = ("python3  " + self.dir_res + "/run_resfinder.py"</span></span>

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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+        cmd_acquired = ("run_resfinder.py"</span></span>

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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff">                         + " -ifa " + test_data[test_names[0]]</span>

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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff">                         + " -o " + test1_dir</span>

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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff">                         + " -s 'Escherichia coli'"</span>

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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="p">@@ -139,7 +139,7 @@</span> class ResFinderRunTest(unittest.TestCase</span>

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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff">         os.makedirs(test2_dir, exist_ok=False)</span>

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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> </span>

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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff">         # Then she runs run_resfinder with her first isolate.</span>

</pre>

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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-        cmd_acquired = ("python3 " + self.dir_res + "/run_resfinder.py"</span></span>

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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+        cmd_acquired = ("run_resfinder.py"</span></span>

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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff">                         + " -ifq " + test_data[test_names[1]]</span>

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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff">                         + " -o " + test2_dir</span>

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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff">                         + " -s 'Escherichia coli'"</span>

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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="p">@@ -196,7 +196,7 @@</span> class ResFinderRunTest(unittest.TestCase</span>

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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff">         os.makedirs(test3_dir)</span>

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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> </span>

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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff">         # Then she runs run_resfinder with her first isolate.</span>

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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-        cmd_point = ("python3 " + self.dir_res + "/run_resfinder.py"</span></span>

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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+        cmd_point = ("run_resfinder.py"</span></span>

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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff">                      + " -ifa " + test_data[test_names[2]]</span>

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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff">                      + " -o " + test3_dir</span>

</pre>

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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff">                      + " -s 'Escherichia coli'"</span>

</pre>

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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="p">@@ -240,7 +240,7 @@</span> class ResFinderRunTest(unittest.TestCase</span>

</pre>

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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff">         os.makedirs(test4_dir, exist_ok=False)</span>

</pre>

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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"> </span>

</pre>

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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff">         # Then she runs run_resfinder with her first isolate.</span>

</pre>

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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-        cmd_acquired = ("python3 " + self.dir_res + "/run_resfinder.py"</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+        cmd_acquired = ("run_resfinder.py"</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff">                         + " -ifq " + test_data[test_names[3]]</span>

</pre>

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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff">                         + " -o " + test4_dir</span>

</pre>

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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff">                         + " -s 'Escherichia coli'"</span></pre>

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</table>

<br>

</li>

<li id="9ffbea523f68ec2af6eb4481d50c985a8295dcf1">

<a href="https://salsa.debian.org/med-team/resfinder/-/compare/19f0c5e316810b942e7cd24f3ad95d09550b95a3...5dfddc299f3f20dbf1650934eb4baa79e5303652#9ffbea523f68ec2af6eb4481d50c985a8295dcf1"><strong>debian/patches/fix_syntax.patch</strong></a>

<hr>

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1

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>

</pre>

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2

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Sat, 03 Oct 2020 12:00:25 +0200</span></span>

</pre>

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3

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Fix syntax</span></span>

</pre>

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4

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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>

</pre>

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5

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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/cge/resfinder.py</span>

</pre>

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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/cge/resfinder.py</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -424,7 +424,7 @@</span> class ResFinder(CGEFinder):</span>

</pre>

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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff">         """</span>

</pre>

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff">         """</span>

</pre>

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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff">         # Check if databases and config file are correct/correponds</span>

</pre>

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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-        if databases is '':</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+        if databases == '':</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff">                 sys.exit("Input Error: No database was specified!\n")</span>

</pre>

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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff">         elif databases is None:</span>

</pre>

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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff">             # Choose all available databases from the config file</span></pre>

</td>

</tr>

</table>

<br>

</li>

<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">

<a href="https://salsa.debian.org/med-team/resfinder/-/compare/19f0c5e316810b942e7cd24f3ad95d09550b95a3...5dfddc299f3f20dbf1650934eb4baa79e5303652#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>

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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

1

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">fix_path_in_testscript.patch</span>

</pre>

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2

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">fix_syntax.patch</span></pre>

</td>

</tr>

</table>

<br>

</li>

<li id="e63263210b9156ba404e775f941345f7b4dc919c">

<a href="https://salsa.debian.org/med-team/resfinder/-/compare/19f0c5e316810b942e7cd24f3ad95d09550b95a3...5dfddc299f3f20dbf1650934eb4baa79e5303652#e63263210b9156ba404e775f941345f7b4dc919c"><strong>debian/resfinder.install</strong></a>

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1

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1

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<pre style="margin: 0;"> <span id="LC1" class="line" lang="php"><span class="o" style="font-weight: 600;">*.</span><span class="n" style="color: #333;">py</span>   <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">resfinder</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

2

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="n" style="color: #333;">cge</span>     <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">resfinder</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

3

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"><span class="n" style="color: #333;">scripts</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">resfinder</span></span></pre>

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<br>

</li>

<li id="8756c63497c8dc39f7773438edf53b220c773f67">

<a href="https://salsa.debian.org/med-team/resfinder/-/compare/19f0c5e316810b942e7cd24f3ad95d09550b95a3...5dfddc299f3f20dbf1650934eb4baa79e5303652#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>

<hr>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,5 +3,9 @@</td>

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3

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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3

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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">%:</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

4

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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

4

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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">      dh $@ --with python3</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

5

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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

5

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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

6

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">override_dh_install:</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

7

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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">      dh_install</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

8

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">      find debian -name trash -type d | xargs rm -rf</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

9

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

6

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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

10

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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">override_dh_installman:</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

7

</td>

<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

11

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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">     dh_installman --language=C</span></pre>

</td>

</tr>

</table>

<br>

</li>

<li id="8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">

<a href="https://salsa.debian.org/med-team/resfinder/-/compare/19f0c5e316810b942e7cd24f3ad95d09550b95a3...5dfddc299f3f20dbf1650934eb4baa79e5303652#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>

<hr>

<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,4 +15,4 @@ cd "${AUTOPKGTEST_TMP}"</td>

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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

15

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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

15

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

16

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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

16

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"><span class="nb" style="color: #0086b3;">gunzip</span> <span class="nt" style="color: #000080;">-r</span> <span class="k" style="font-weight: 600;">*</span></span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

17

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<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

17

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell"></span>

</pre>

</td>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

18

</td>

<td class="diff-line-num new_line old" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell">python3 <span class="idiff left right">unit</span>_tests.py</span></pre>

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<td class="diff-line-num new old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

18

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell">python3 <span class="idiff left right">functional</span>_tests.py</span></pre>

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