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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/mothur">Debian Med / mothur</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/mothur/-/commit/c14c3dde6e616fc07449b05d5293e07d443370a2">c14c3dde</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-12-04T21:52:18+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not include sys/sysctl.h since it will be removed and is not used anyway
</pre>
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<strong><a href="https://salsa.debian.org/med-team/mothur/-/commit/e4fff2b7825be1c0fbec580d362ef3d1701897ff">e4fff2b7</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-12-04T21:52:49+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
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<li>
<strong><a href="https://salsa.debian.org/med-team/mothur/-/commit/4da324a9feefb4100e0ac9e48461dd7de3d4253d">4da324a9</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-12-04T21:53:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
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<h4>5 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#fc6d264550d6fb30f68fdcfdf1a8d058a6ff93dd">
<span class="new-file">
+
debian/patches/drop_sys_sysctl.h.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/mothur/-/compare/3ff22c70507d77141dd280ce73f22c38a3c9e3e3...4da324a9feefb4100e0ac9e48461dd7de3d4253d#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">mothur (1.44.3-2) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Do not include sys/sysctl.h since it will be removed and is</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> not used anyway</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Closes: #967985</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Standards-Version: 4.5.1 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Set upstream metadata fields: Repository, Repository-Browse.</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 04 Dec 2020 21:50:02 +0100</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">mothur (1.44.3-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * New upstream version 1.44.3</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/mothur/-/compare/3ff22c70507d77141dd280ce73f22c38a3c9e3e3...4da324a9feefb4100e0ac9e48461dd7de3d4253d#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,7 +10,7 @@ Build-Depends: debhelper-compat (= 13),</td>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> libboost-iostreams-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> libreadline-dev,</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> zlib1g-dev</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">0</span></span>
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<td class="diff-line-num new old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">1</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/mothur</span>
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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/mothur.git</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Homepage: https://www.mothur.org</span>
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<li id="fc6d264550d6fb30f68fdcfdf1a8d058a6ff93dd">
<a href="https://salsa.debian.org/med-team/mothur/-/compare/3ff22c70507d77141dd280ce73f22c38a3c9e3e3...4da324a9feefb4100e0ac9e48461dd7de3d4253d#fc6d264550d6fb30f68fdcfdf1a8d058a6ff93dd"><strong>debian/patches/drop_sys_sysctl.h.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Do not include sys/sysctl.h since it will be removed and is not used anyway</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Bug-Debia: https://bugs.debian.org/967985</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Last-Update: Fri, 04 Dec 2020 21:50:02 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">--- a/source/uchime_src/myutils.cpp</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/source/uchime_src/myutils.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -672,7 +672,6 @@</span> double GetMemUseBytes()</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> #include <stdio.h></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> #include <unistd.h></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> #include <sys/types.h></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <sys/sysctl.h></span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> #include <sys/socket.h></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> #include <sys/gmon.h></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> #include <mach/vm_param.h></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/source/mothur.h</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/source/mothur.h</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="p">@@ -83,7 +83,6 @@</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> #include <sys/resource.h></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> #include <sys/types.h></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> #include <sys/stat.h></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #include <sys/sysctl.h></span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> #include <unistd.h></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/TestMothur/catch.hpp</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/TestMothur/catch.hpp</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="p">@@ -7992,7 +7992,6 @@</span> namespace Catch {</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> #include <stdbool.h></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> #include <sys/types.h></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> #include <unistd.h></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #include <sys/sysctl.h></span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> namespace Catch{</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> </span></pre>
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<a href="https://salsa.debian.org/med-team/mothur/-/compare/3ff22c70507d77141dd280ce73f22c38a3c9e3e3...4da324a9feefb4100e0ac9e48461dd7de3d4253d#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">0002-Fix-include.patch</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">drop_sys_sysctl.h.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/mothur/-/compare/3ff22c70507d77141dd280ce73f22c38a3c9e3e3...4da324a9feefb4100e0ac9e48461dd7de3d4253d#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -29,3 +29,5 @@ Registry:</td>
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29
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> Entry: SCR_011947</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> - Name: conda:bioconda</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> Entry: mothur</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">Repository: https://github.com/mothur/mothur.git</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">Repository-Browse: https://github.com/mothur/mothur</span></pre>
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