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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/plast">Debian Med / plast</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/plast/-/commit/7d7bfae46403a5fddfd918331d348d65c2537b7f">7d7bfae4</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-12-06T00:55:49+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Attempt enabling simde
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plast/-/commit/538640d5da8d315982071d0f1ef531e10521e104">538640d5</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-12-06T00:55:54+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add Build-Dep and Built-Using since the license is AGPL
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plast/-/commit/a2e06f5d4fe39325fdbec6239b69ebf9d386ca36">a2e06f5d</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-12-06T00:55:54+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Enable simde flags
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plast/-/commit/faed4f0cc37cd6dec7460c32ab269e8b2bf99894">faed4f0c</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-12-06T01:07:14+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not hardcode the arch for running test
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plast/-/commit/51e387cf62204d22d7e7d907885949c83aa4ebf9">51e387cf</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-12-06T01:33:23+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plast/-/commit/af4d25f8b05e05b729ca211aa4c99856d21b1999">af4d25f8</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-12-06T03:21:43+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'simde'
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plast/-/commit/90f479b02938865b434bed12d460ef7fd9e77e5e">90f479b0</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-12-06T03:22:59+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
</pre>
</li>
</ul>
<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#7c887a7428a42607efb323972a29ee9c7c4e09c0">
debian/patches/adapt_auto_test_script.sh
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#5dc91bdd30262777c0556235b73413cd5865a144">
<span class="new-file">
+
debian/patches/simde.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/plast/-/compare/afb3ddccf6b364e7ca4d0fb9e3b1a6ff1d5f6773...90f479b02938865b434bed12d460ef7fd9e77e5e#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">plast (2.3.2+dfsg-5) unstable; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team Upload.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Attempt enabling simde</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Add Build-Dep and Built-Using since the license is AGPL</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Enable simde flags</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Do not hardcode the arch for running test</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Nilesh Patra <npatra974@gmail.com> Sun, 06 Dec 2020 01:33:09 +0530</span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
</pre>
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1
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">plast (2.3.2+dfsg-4) unstable; urgency=medium</span>
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2
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Do nothing in dh_auto_configure and dh_auto_build for indep binaries</span>
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</li>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/plast/-/compare/afb3ddccf6b364e7ca4d0fb9e3b1a6ff1d5f6773...90f479b02938865b434bed12d460ef7fd9e77e5e#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,6 +7,7 @@ Build-Depends: debhelper-compat (= 13),</td>
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> cmake,</span>
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> libpcre3-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> default-jdk</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> libsimde-dev</span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Standards-Version: 4.5.1</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/plast</span>
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12
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/plast.git</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,7 +15,9 @@ Homepage: https://plast.inria.fr/</td>
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14
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Package: plast</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">Architecture: any-amd64 x32</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">Architecture: any</span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"># Since the license of this package is AGPL, adding a Built-Using</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">Built-Using: ${simde:Built-Using}</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> ${java:Depends}</span>
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<li id="7c887a7428a42607efb323972a29ee9c7c4e09c0">
<a href="https://salsa.debian.org/med-team/plast/-/compare/afb3ddccf6b364e7ca4d0fb9e3b1a6ff1d5f6773...90f479b02938865b434bed12d460ef7fd9e77e5e#7c887a7428a42607efb323972a29ee9c7c4e09c0"><strong>debian/patches/adapt_auto_test_script.sh</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,7 +12,7 @@ Description: Adapt test script to Debian installation</td>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="shell"><span class="nt" style="color: #000080;">-_result</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$_scripts_dir</span>/out.txt</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell">+BUILD_DIR<span class="o" style="font-weight: 600;">=</span>obj-<span class="si" style="color: #d14;">$(</span>dpkg-architecture <span class="nt" style="color: #000080;">-qDEB_HOST_GNU_TYPE</span><span class="si" style="color: #d14;">)</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell">+DATA_DIR<span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">pwd</span><span class="si" style="color: #d14;">)</span>/db</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="shell">+_script<span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span>find <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">pwd</span><span class="si" style="color: #d14;">)</span>/obj-<span class="idiff left right">x86_64</span>-linux-gnu/bin <span class="nt" style="color: #000080;">-name</span> plast <span class="nt" style="color: #000080;">-executable</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell">+_script<span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span>find <span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">pwd</span><span class="si" style="color: #d14;">)</span>/obj-<span class="k" style="font-weight: 600;"><span class="idiff left right">*</span></span><span class="nt" style="color: #000080;">-linux-gnu</span>/bin <span class="nt" style="color: #000080;">-name</span> plast <span class="nt" style="color: #000080;">-executable</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell">+_result<span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">dirname</span> <span class="nv" style="color: #008080;">$_script</span><span class="sb" style="color: #d14;">`</span>/out.txt</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell"> </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span></span>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/plast/-/compare/afb3ddccf6b364e7ca4d0fb9e3b1a6ff1d5f6773...90f479b02938865b434bed12d460ef7fd9e77e5e#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,3 +2,4 @@ use_debian_packaged_pcre.patch</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">adapt_auto_test_script.sh</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">no_msse3.patch</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">reproducible.patch</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">simde.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/plast/-/compare/afb3ddccf6b364e7ca4d0fb9e3b1a6ff1d5f6773...90f479b02938865b434bed12d460ef7fd9e77e5e#5dc91bdd30262777c0556235b73413cd5865a144"><strong>debian/patches/simde.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">@@ -19,15 +19,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> #include <algo/hits/gap/SmallGapHitIteratorSSE8.hpp></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#if __SSE3__</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #include <pmmintrin.h></span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#else</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #if __SSE2__</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #include <emmintrin.h></span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #else</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #warning error undefined __SSE3__ or __SSE2__</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #endif</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#endif</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define SIMDE_ENABLE_NATIVE_ALIASES</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <simde/x86/sse3.h></span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> using namespace std;</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> using namespace misc;</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="p">@@ -21,15 +21,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> #include <algo/hits/ungap/UngapHitIteratorSSE16.hpp></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#if __SSE3__</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #include <pmmintrin.h></span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#else</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#if __SSE2__</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #include <emmintrin.h></span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#else</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #warning error undefined __SSE3__ or __SSE2__</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#endif</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#endif</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define SIMDE_ENABLE_NATIVE_ALIASES</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <simde/x86/sse3.h></span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"> using namespace std;</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"> using namespace misc;</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="p">@@ -20,15 +20,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"> #include <algo/hits/ungap/UngapHitIteratorSSE8.hpp></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#if __SSE3__</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #include <pmmintrin.h></span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#else</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#if __SSE2__</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #include <emmintrin.h></span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#else</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #warning error undefined __SSE3__ or __SSE2__</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#endif</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#endif</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define SIMDE_ENABLE_NATIVE_ALIASES</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <simde/x86/sse3.h></span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"> using namespace std;</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"> using namespace misc;</span></pre>
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<a href="https://salsa.debian.org/med-team/plast/-/compare/afb3ddccf6b364e7ca4d0fb9e3b1a6ff1d5f6773...90f479b02938865b434bed12d460ef7fd9e77e5e#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,6 +8,8 @@ BUILD_DIR := obj-$(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">BUILD_DATE := $(shell TZ=UTC LC_ALL=C dpkg-parsechangelog | grep Date: | cut -d' ' -f2-7)</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">export BDATE=$(shell TZ=UTC LC_ALL=C date -d"$(BUILD_DATE)" +'%Y-%m-%d')</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS = hardening=+all</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">export DEB_CFLAGS_MAINT_APPEND += -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">export DEB_CXXFLAGS_MAINT_APPEND += -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> dh $@ --buildsystem=cmake</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -24,6 +26,9 @@ override_dh_auto_build-indep:</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">override_dh_auto_install-indep:</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> echo "I: Nothing to do for arch:indep binary"</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">override_dh_gencontrol:</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> dh_gencontrol -- -Vsimde:Built-Using="$(shell dpkg-query -f '$${source:Package} (= $${source:Version}), ' -W "libsimde-dev")"</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> scripts/test-plast.sh</span>
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