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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d16bfe765edad3bfceb28fa01d8ced39afd8c4d2">d16bfe76</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-07T13:52:48+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d16bfe765edad3bfceb28fa01d8ced39afd8c4d2#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 07 Dec 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 07 Dec 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> dcmtk | 188 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 100 | {<span class="idiff left right">covid-19,imaging</span>,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 50 | {<span class="idiff left right">his,imaging,practice,oncology,laboratory,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 100 | {<span class="idiff left right">imaging,covid-19</span>,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 50 | {<span class="idiff left right">imaging,covid-19,oncology,laboratory,his,practice</span>} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> gdcm | 36 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> htsjdk | 30 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dicom3tools | 23 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> gdcm | 21 | {<span class="idiff left right">covid-19,imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> gdcm | 21 | {<span class="idiff left right">imaging,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dcm2niix | 20 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> dicomscope | 19 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> adun.app | 17 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> ngs-sdk | 17 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> gnumed-server | 16 | {<span class="idiff left right">practice,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> gnumed-server | 16 | {<span class="idiff left right">covid-19,practice</span>} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> nifticlib | 16 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> gdcm | 14 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> invesalius | 14 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -29,18 +29,20 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> orthanc-webviewer | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> plastimatch | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> jebl2 | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> king | 8 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> salmon | 8 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> king | 8 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> melting | 8 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> nifti2dicom | 8 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> salmon | 8 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> seqsero | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> vtk-dicom | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> biojava-live | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> fastlink | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> nifti2dicom | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> orthanc-dicomweb | 7 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> staden | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> treeview | 7 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> arden | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> bamkit | 6 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> arden | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> bamkit | 6 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> bart-view | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> dicompyler | 6 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> libncl | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -49,20 +51,20 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> orthanc-postgresql | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> pymia | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> rambo-k | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> anfo | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> anfo | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> beast-mcmc | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> bio-tradis | 5 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> ecopcr | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> elastix | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> embassy-domainatrix | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> embassy-domalign | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> embassy-domalign | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> getdata | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> ipig | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> jmodeltest | 5 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> jmodeltest | 5 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> libdivsufsort | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> metaphlan2 | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> mipe | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> multiqc | 5 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> mipe | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> multiqc | 5 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> obitools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> paraclu | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> phybin | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -72,7 +74,7 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> runcircos-gui | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> saint | 5 | {bio} | </span>
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76
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> spaced | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="plaintext"> spread-phy | 5 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> spread-phy | 5 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> tracetuner | 5 | {bio} | </span>
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79
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> zalign | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> assemblytics | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -81,7 +83,7 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> brig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> clonalframeml | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> clonalorigin | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> embassy-domsearch | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> embassy-domsearch | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> fastml | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> fsm-lite | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> ghmm | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -102,36 +104,37 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> quorum | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> rdp-classifier | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> sga | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="plaintext"> sibsim4 | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext"> sibsim4 | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> sprai | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> stacks | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> surankco | 4 | {bio} | </span>
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> biomaj3-daemon | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="plaintext"> busco | 3 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext"> busco | 3 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> canu | 3 | {bio} | </span>
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114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> dindel | 3 | {bio} | </span>
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115
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> estscan | 3 | {bio} | </span>
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116
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> hinge | 3 | {bio} | </span>
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117
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> jellyfish1 | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="plaintext"> mhap | 3 | {bio<span class="idiff left right">,bio-ngs</span>} | </span>
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="plaintext"> proalign | 3 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> mhap | 3 | {bio<span class="idiff left right">-ngs,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> proalign | 3 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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120
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> rtax | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext"> salmid | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> sight | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> soapaligner | 3 | {bio} | </span>
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124
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> soapsnp | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> suitename | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> yaha | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="plaintext"> biosig | 2 | {<span class="idiff left right">imaging-dev,physics</span>} | </span>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="plaintext"> blasr | 2 | {bio<span class="idiff left right">-ngs,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext"> biosig | 2 | {<span class="idiff left right">physics,imaging-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext"> blasr | 2 | {bio<span class="idiff left right">,bio-ngs</span>} | </span>
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> emboss-explorer | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> gatb-core | 2 | {bio} | </span>
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> libbio-mage-utils-perl | 2 | {bio-dev} | </span>
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132
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> libctapimkt | 2 | {practice} | </span>
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133
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> libmuscle | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="plaintext"> oscar | 2 | {<span class="idiff left right">tools,practice,data</span>} | </span>
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> oscar | 2 | {<span class="idiff left right">data,tools,practice</span>} | </span>
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135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> pscan-chip | 2 | {bio} | </span>
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136
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> qcumber | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="plaintext"> samblaster | 2 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext"> samblaster | 2 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> segemehl | 2 | {bio} | </span>
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> seqan | 2 | {bio-dev} | </span>
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137
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> simpleitk | 2 | {imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -139,9 +142,9 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000</td>
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> acedb | 1 | {bio,cloud} | </span>
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143
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> bambamc | 1 | {bio-dev} | </span>
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141
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> bbmap | 1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="plaintext"> biosig | 1 | {<span class="idiff left right">physics,imaging-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext"> biosig | 1 | {<span class="idiff left right">imaging-dev,physics</span>} | </span>
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="plaintext"> cat-bat | 1 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> cat-bat | 1 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> ctn | 1 | {imaging-dev} | </span>
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> delly | 1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> gatb-core | 1 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -186,10 +189,10 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> bustools | 0 | {bio,covid-19} | </span>
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187
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190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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188
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191
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> cufflinks | 0 | {cloud,bio} | </span>
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189
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="plaintext"> dextractor | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext"> dextractor | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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190
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193
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> emmax | 0 | {bio} | </span>
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191
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194
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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192
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="plaintext"> htscodecs | 0 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"> htscodecs | 0 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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193
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> kmerresistance | 0 | {bio} | </span>
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> libbigwig | 0 | {bio-dev} | </span>
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198
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> libbiod | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -203,8 +206,8 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> metastudent-data | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> metastudent-data-2 | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> miaviewit | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="plaintext"> milib | 0 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="plaintext"> nanosv | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext"> milib | 0 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"> nanosv | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> nifticlib | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -214,9 +217,11 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="plaintext"> pilercr | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> pique | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> pplacer | 0 | {covid-19,bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC217" class="line" lang="plaintext"> python-<span class="idiff left right">seqcluster | 0 | {covid-19,bio-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="plaintext"> python-<span class="idiff left right">bcbio-gff | 0 | {bio-dev} </span> | </span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="plaintext"> python-seqcluster | 0 | {bio-dev,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> q2templates | 0 | {bio,bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> shovill | 0 | {bio,covid-19} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -226,15 +231,17 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> skewer | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> smrtanalysis | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> spaln | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="plaintext"> tophat-recondition | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="plaintext"> tophat-recondition | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> varscan | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="plaintext"> vienna-rna | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext"> vienna-rna | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC234" class="line" lang="plaintext"> yanagiba | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext"> yanagiba | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> mssstest | -1 | {tools} | </span>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="plaintext"> orthanc-gdcm | -1 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> orthanc-python | -1 | {covid-19} | </span>
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243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="plaintext"> q2-sample-classifier | -1 | {bio-dev,bio} | </span>
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244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> sight | -1 | {imaging-dev} | </span>
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238
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> svim | -1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC239" class="line" lang="plaintext">(2<span class="idiff left right">64</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="plaintext">(2<span class="idiff left right">72</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"></span></pre>
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