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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/seqmagick">Debian Med / seqmagick</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/seqmagick/-/commit/4a0861723a075bec35039d52060ec8f81e74ba4f">4a086172</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-09T14:27:02+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.8.4</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/seqmagick/-/commit/61c1fa50539b0e21002ac60e75de1cabdca7c27a">61c1fa50</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-09T14:27:02+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/seqmagick/-/commit/cc3e23fac1a80fccf28432cdd7b5f0d5af473fa1">cc3e23fa</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-09T14:27:04+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.8.4'
Update to upstream version '0.8.4'
with Debian dir 9fe2b35544f8b9ba79bbc2ba28b9b74830de82c6</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/seqmagick/-/commit/efa1dc56fdcd695beb94982dd1b29efdc29b42e9">efa1dc56</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-09T14:27:04+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/seqmagick/-/commit/28113579bcdc23056e6f8b0de00552d647e26229">28113579</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-09T14:27:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/seqmagick/-/commit/880f28523d3beeaa90ba61b27381a55a18645070">880f2852</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-09T14:35:28+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">More verbose autopkgtest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/seqmagick/-/commit/334b79ad5faf38e91fc2704ce846ab78fa2e4b51">334b79ad</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-09T14:36:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">run against the test selected by the for loop
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/seqmagick/-/commit/23547e9b2933a29891e86d1941a55922247197ba">23547e9b</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-09T14:41:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/changelog: record minor change to autopkgtest
</pre>
</li>
</ul>
<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
</a>
</li>
<li class="file-stats">
<a href="#d5b95025744fd1556a32320b8f795fd339151809">
requirements-rtd.txt
</a>
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<li class="file-stats">
<a href="#19359a61ae2446b51b549167b014da2fcf265768">
requirements.txt
</a>
</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="561b88e19de321ca62c7590bbb350765fb110905">
<a href="https://salsa.debian.org/med-team/seqmagick/-/compare/304ee0448f44a2eea0867205f97fab1f82dbbe24...23547e9b2933a29891e86d1941a55922247197ba#561b88e19de321ca62c7590bbb350765fb110905"><strong>README.rst</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,7 +20,7 @@ Requirements</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">============</span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">* Python >= 3.5</span>
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<td class="diff-line-num old old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext">* biopython >= 1.7<span class="idiff left right">0</span></span>
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<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">* biopython >= 1.7<span class="idiff left right">8</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Installation</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">============</span>
</pre>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/seqmagick/-/compare/304ee0448f44a2eea0867205f97fab1f82dbbe24...23547e9b2933a29891e86d1941a55922247197ba#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">seqmagick (0.8.4-1) unstable; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * New upstream version</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Standards-Version: 4.5.1 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * More verbose autopkgtest and minor fix in case several shell scripts are in</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> the same directory in the future.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Étienne Mollier <etienne.mollier@mailoo.org> Wed, 09 Dec 2020 14:27:08 +0100</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">seqmagick (0.8.2-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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3
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Add myself to Uploaders.</span>
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<a href="https://salsa.debian.org/med-team/seqmagick/-/compare/304ee0448f44a2eea0867205f97fab1f82dbbe24...23547e9b2933a29891e86d1941a55922247197ba#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,7 +11,7 @@ Build-Depends: debhelper-compat (= 13),</td>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> python3-nose,</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> python3-biopython,</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> python3-pygtrie</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">0</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">1</span></span>
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/seqmagick</span>
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/seqmagick.git</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Homepage: https://github.com/fhcrc/seqmagick/</span>
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<a href="https://salsa.debian.org/med-team/seqmagick/-/compare/304ee0448f44a2eea0867205f97fab1f82dbbe24...23547e9b2933a29891e86d1941a55922247197ba#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,10 +13,11 @@ cp ${TEST_DIR}/examples -a "${AUTOPKGTEST_TMP}"</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">gunzip</span> <span class="nt" style="color: #000080;">-r</span> <span class="k" style="font-weight: 600;">*</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-x</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>f <span class="k" style="font-weight: 600;">in</span> <span class="sb" style="color: #d14;">`</span>find examples/ <span class="nt" style="color: #000080;">-name</span> <span class="s1" style="color: #d14;">'*.sh'</span><span class="sb" style="color: #d14;">`</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">cd</span> <span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">dirname</span> <span class="nv" style="color: #008080;">$f</span><span class="sb" style="color: #d14;">`</span></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="shell"> /bin/bash <span class="k" style="font-weight: 600;"><span class="idiff left">*</span></span><span class="idiff right">.sh</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell"> /bin/bash <span class="sb" style="color: #d14;"><span class="idiff left">`</span></span><span class="nb" style="color: #0086b3;"><span class="idiff">basename</span></span><span class="idiff"> </span><span class="nv" style="color: #008080;"><span class="idiff">$f</span></span><span class="sb" style="color: #d14;"><span class="idiff right">`</span></span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">cd</span> -</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s1" style="color: #d14;">'PASS'</span></span>
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<a href="https://salsa.debian.org/med-team/seqmagick/-/compare/304ee0448f44a2eea0867205f97fab1f82dbbe24...23547e9b2933a29891e86d1941a55922247197ba#d5b95025744fd1556a32320b8f795fd339151809"><strong>requirements-rtd.txt</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">biopython</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">biopython>=1.78</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">pygtrie>=2.1</span>
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2
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">sphinx</span></pre>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">pygtrie</span></pre>
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<a href="https://salsa.debian.org/med-team/seqmagick/-/compare/304ee0448f44a2eea0867205f97fab1f82dbbe24...23547e9b2933a29891e86d1941a55922247197ba#19359a61ae2446b51b549167b014da2fcf265768"><strong>requirements.txt</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/biopython" rel="nofollow noreferrer noopener" target="_blank">biopython</a>>=1.7<span class="idiff left right">0</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/pygtrie" rel="nofollow noreferrer noopener" target="_blank">pygtrie</a></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/biopython" rel="nofollow noreferrer noopener" target="_blank">biopython</a>>=1.7<span class="idiff left right">8</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/pygtrie" rel="nofollow noreferrer noopener" target="_blank">pygtrie</a><span class="idiff left right">>=2.1</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"># for development</span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/wheel" rel="nofollow noreferrer noopener" target="_blank">wheel</a></span>
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<a href="https://salsa.debian.org/med-team/seqmagick/-/compare/304ee0448f44a2eea0867205f97fab1f82dbbe24...23547e9b2933a29891e86d1941a55922247197ba#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -35,7 +35,7 @@ setup(name='seqmagick',</td>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="python"> <span class="n" style="color: #333;">setup_requires</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">'nose>=1.0'</span><span class="p">],</span></span>
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36
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="python"> <span class="n" style="color: #333;">python_requires</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'>=3.5'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="python"> <span class="n" style="color: #333;">test_suite</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'nose.collector'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="python"> <span class="n" style="color: #333;">install_requires</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">'biopython>=1.7<span class="idiff left right">0</span>'</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="python"> <span class="n" style="color: #333;">install_requires</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">'biopython>=1.7<span class="idiff left">8'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff right">'pygtrie>=2.1</span>'</span><span class="p">],</span></span>
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39
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="python"> <span class="n" style="color: #333;">classifiers</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="python"> <span class="s" style="color: #d14;">'License :: OSI Approved :: GNU General Public License (GPL)'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="python"> <span class="s" style="color: #d14;">'Development Status :: 4 - Beta'</span><span class="p">,</span></span>
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