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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/q2-dada2">Debian Med / q2-dada2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/q2-dada2/-/commit/fe1df94ae32299a8cf5f97ceabbf5c43ba58169c">fe1df94a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-09T11:30:57+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">DEP3
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/q2-dada2/-/commit/44605ad4dc6ee47a2ddb7c13960c1f59446272e6">44605ad4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-09T11:39:41+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add r-core dependency
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/q2-dada2/-/commit/e20b640814e707fcb295d8d98efebdbb95b2f6f8">e20b6408</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-12-09T11:43:17+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add final newline to keep lintian silent
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</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/q2-dada2/-/commit/fe7e1f3d282a0ee54d68ca64764c230d89ee16d5">fe7e1f3d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-09T11:48:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to new
</pre>
</li>
</ul>
<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<li class="file-stats">
<a href="#02fa059e7b5f13e8b2622a245732f8110c32dd43">
debian/patches/RscriptPath.patch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/q2-dada2/-/compare/a20f2431284f9b4e9ab30af425beeabfc8fa6604...fe7e1f3d282a0ee54d68ca64764c230d89ee16d5#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">q2-dada2 (2020.11.1-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">q2-dada2 (2020.11.1-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #976863)</span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/q2-dada2/-/compare/a20f2431284f9b4e9ab30af425beeabfc8fa6604...fe7e1f3d282a0ee54d68ca64764c230d89ee16d5#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,6 +20,7 @@ Architecture: any</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="mosel"><span class="n" style="color: #333;">Depends</span><span class="p">:</span> <span class="p">${</span><span class="n" style="color: #333;">shlibs</span><span class="p">:</span><span class="n" style="color: #333;">Depends</span><span class="p">},</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="mosel"> <span class="p">${</span><span class="n" style="color: #333;">misc</span><span class="p">:</span><span class="n" style="color: #333;">Depends</span><span class="p">},</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="mosel"> <span class="p">${</span><span class="n" style="color: #333;">python3</span><span class="p">:</span><span class="n" style="color: #333;">Depends</span><span class="p">},</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">base</span><span class="p">-</span><span class="n" style="color: #333;">core</span><span class="p">,</span></span>
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<td class="diff-line-num new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="mosel"> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">bioc</span><span class="p">-</span><span class="n" style="color: #333;">dada2</span><span class="p">,</span></span>
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<td class="diff-line-num new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="mosel"> <span class="n" style="color: #333;">qiime</span></span>
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<td class="diff-line-num new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="mosel"><span class="n" style="color: #333;">Description</span><span class="p">:</span> <span class="n" style="color: #333;">QIIME</span> <span class="m" style="color: #099;">2</span> <span class="n" style="color: #333;">plugin</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">work</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">adapters</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">sequence</span> <span class="n" style="color: #333;">data</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -47,4 +48,4 @@ Description: QIIME 2 plugin to work with adapters in sequence data</td>
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<td class="diff-line-num old_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
47
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48
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="mosel"> <span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="mosel"> <span class="n" style="color: #333;">This</span> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">wraps</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">dada2</span> <span class="n" style="color: #333;">R</span> <span class="k" style="font-weight: 600;">package</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">BioConductor</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">modeling</span> <span class="k" style="font-weight: 600;">and</span></span>
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<td class="diff-line-num new_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="mosel"> <span class="n" style="color: #333;">correcting</span> <span class="n" style="color: #333;">Illumina</span><span class="p">-</span><span class="n" style="color: #333;">sequenced</span> <span class="n" style="color: #333;">amplicon</span> <span class="n" style="color: #333;">errors</span><span class="p">.</span> <span class="n" style="color: #333;">This</span> <span class="n" style="color: #333;">was</span> <span class="n" style="color: #333;">shown</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">improve</span> <span class="n" style="color: #333;">the</span></span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="mosel"> <span class="n" style="color: #333;">sensitivity</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">diversity</span> <span class="n" style="color: #333;">analyses</span><span class="p">.</span></span></pre>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="mosel"> <span class="n" style="color: #333;">sensitivity</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">diversity</span> <span class="n" style="color: #333;">analyses</span><span class="p">.</span></span></pre>
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<a href="https://salsa.debian.org/med-team/q2-dada2/-/compare/a20f2431284f9b4e9ab30af425beeabfc8fa6604...fe7e1f3d282a0ee54d68ca64764c230d89ee16d5#02fa059e7b5f13e8b2622a245732f8110c32dd43"><strong>debian/patches/RscriptPath.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Steffen Möller</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: 2020-12-08 19:52:45 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Fix interpreter</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">Index: q2-dada2/q2_dada2/assets/run_dada_paired.R</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- q2-dada2.orig/q2_dada2/assets/run_dada_paired.R</span></span>
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