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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/kmc">Debian Med / kmc</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/3230300962949d3c45ce055eb4fa8dfbae6d14c5">32303009</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T19:04:20+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/04f09c95b8d166c58f4bd7804ce911e4bdb4e097">04f09c95</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T19:04:42+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.1.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/3ee5a72ceb476fc1de5cd7cdbcabbb3bb3c53840">3ee5a72c</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T19:04:43+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.1.1+dfsg'
Update to upstream version '3.1.1+dfsg'
with Debian dir bd0edbf230bd4e87026951567e49316a789b5d64</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/ae95d101dc33818eb7f209e237943fab0c049be5">ae95d101</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T19:19:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">begin removal of refs to asmlib
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/106ef89a98036cc524482485a8b2e1f641c35c80">106ef89a</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T19:24:47+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh use-shared-libs patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/8d8c99dba0e17c2dfb58298785ef359d1974d6d6">8d8c99db</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T19:47:32+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fold patches to makefile into makefile.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/bdbfaf394172dc26d99702ed4434c00af78a1a00">bdbfaf39</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T19:55:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh 0005-Add-static-library-target-to-makefile.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/5e15a770e404a3850b3051f116637ebb0859278d">5e15a770</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T20:03:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Deleted spelling patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/5a8c5c32f9e6269fe81a23dedfa5da18e74c9e38">5a8c5c32</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T20:04:49+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patch newish_gcc_build_fix.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/f83528539b15019a9d7ebc4885cc9c9d0a153250">f8352853</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T20:06:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Removed patch cap-default-thread-count.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/ba198fadd874b345f8b81f4fb660f045e9327231">ba198fad</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T20:09:02+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Activated highly threaded test in autopkgtest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/515584f71d452ea434cc81bdb79bf4e027567937">515584f7</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T20:28:30+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove extra linker options
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/46c1e49e356a1b9f6901e9a81117dd1a2db54107">46c1e49e</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T20:31:28+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Disable the newer python3 bindings
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/cb6788f7752b9df0129e19d797f0c795e5e7bf5f">cb6788f7</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T21:32:20+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">general build flags cleanup
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/760fe6ea936e6e8bb294dd21fa40942b3c28c56c">760fe6ea</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T21:34:07+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">increase autopkgtest stress to 512 threads
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/8ed6d1f359a212063512091c5b8f8f2bdec496ba">8ed6d1f3</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T21:37:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Wrote new spelling.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/35f92f1d970e4807cbbb5e2ed5f6c7f6d0cf97b3">35f92f1d</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T21:44:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add dep3 header to disable-python-bindings.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/9a41059a7180c91896ffc463b4a0256c5defd434">9a41059a</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-10T22:01:55+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#d9d67e646e83973f5e1d6cd63fe8c9dffb33ebba">
<span class="new-file">
+
debian/TODO
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#700bf6a94d524dd7bc3a87bcbd0995b9da08d203">
debian/patches/0005-Add-static-library-target-to-makefile.patch
</a>
</li>
<li class="file-stats">
<a href="#8d997e4fb951bd1c79a9bb0728210356dc537f00">
<span class="deleted-file">
−
debian/patches/0007-Use-standard-compiler-environment-variables.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#6e1b0e482bf583cc58e9f938c81af654e7181ae9">
<span class="deleted-file">
−
debian/patches/cap-default-thread-count.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#2f4ad77a8fb02ec0ee88a3f8ed042320bda0d71c">
<span class="deleted-file">
−
debian/patches/disable-asmlib
</span>
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</li>
<li class="file-stats">
<a href="#e5ff61b0915072c63870bb2bf0b473c1c546e5d4">
<span class="new-file">
+
debian/patches/disable-python-bindings.patch
</span>
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<li class="file-stats">
<a href="#d6c09299b1f914372840e8fd6fcc850f8a11b236">
<span class="deleted-file">
−
debian/patches/hardening
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<li class="file-stats">
<a href="#dc053169aa7f9d53c38ea6df4723f4380e6fd5cb">
<span class="new-file">
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debian/patches/makefile.patch
</span>
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<li class="file-stats">
<a href="#575ec0a4aece2f5a2b68dfb6fd0bffd6352338e0">
debian/patches/newish_gcc_build_fix.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#e4c19aed51618bf0c7ebd03189c67e422f84d4eb">
<span class="deleted-file">
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debian/patches/spelling
</span>
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<li class="file-stats">
<a href="#45ae034d1d71b2d961abb7c91cf3d2f1a02a59c6">
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debian/patches/spelling.patch
</span>
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<li class="file-stats">
<a href="#d23e6caa00d3353607928a1e45041133144565a1">
debian/patches/use-shared-libs
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<li class="file-stats">
<a href="#181f11327f8d244d67aab845056d5536f09b2ccb">
debian/tests/build-lib
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<li class="file-stats">
<a href="#126390cbc06eeb6c9ba905ce121f5a80bf94ccba">
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doc/kmc_tools/complex.tex
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doc/kmc_tools/filter_operation.tex
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doc/kmc_tools/intro.tex
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doc/kmc_tools/kmc_tools.tex
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doc/kmc_tools/simple.tex
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doc/kmc_tools/transform.tex
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doc/kmc_tools/usage.tex
</span>
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<a href="#a7ad9ede728ae751fb9621f033a7fc088871b914">
kmc_api/kmc_file.cpp
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<a href="#41bc84e3c8178b1776497fc204bb0bc3e15d0840">
kmc_api/kmc_file.h
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<a href="#a795b8e411b8dc6ac7952e6db5ddc29bc61e139d">
kmc_api/kmer_api.cpp
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<li class="file-stats">
<a href="#6a495c064f1ff02ad9ae7d1f8dd46cedab45172a">
kmc_api/kmer_api.h
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<a href="#f5259f15cf38fd1223fc86745ea21fa0ac806ac5">
kmc_api/kmer_defs.h
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<a href="#3935e0d4ba105bf5068ab24f73870ebfd83ba92d">
kmc_api/mmer.cpp
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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