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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/cwltool">Debian Med / cwltool</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/cwltool/-/commit/61bf7f44aefacc6640ed479f911d3baac5e3e3c9">61bf7f44</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-10T22:08:01+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Abbreviated option names are no longer allowed in pytest 6
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cwltool/-/commit/3a42d022174c3b0f71bc6930736bc0a5cd74f85c">3a42d022</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-10T22:09:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Abbreviated option names are no longer allowed in pytest 6 (in Debian packaging)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cwltool/-/commit/ca989c275c5cfa0bee68d35c170d9b1352ea7940">ca989c27</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-10T22:18:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.5.1
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<li>
<strong><a href="https://salsa.debian.org/med-team/cwltool/-/commit/81c96a9ae150298738e96f599495f756b655cf5b">81c96a9a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-10T22:24:03+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#03c322cda16a58f0c1ef6d9450ddbe29663d974c">
<span class="new-file">
+
debian/patches/pytest6.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#aab2726ed6daf419caf178b1480b6d7da8a85af6">
debian/tests/run-tests
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/cwltool/-/compare/cd82d548c737f3f50aea5561b9ea4e121611a774...81c96a9ae150298738e96f599495f756b655cf5b#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">cwltool (3.0.20200807132242-3) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Abbreviated option names are no longer allowed in pytest 6</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Closes: #977067</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Standards-Version: 4.5.1</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 10 Dec 2020 22:19:00 +0100</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">cwltool (3.0.20200807132242-2) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Team upload.</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/cwltool/-/compare/cd82d548c737f3f50aea5561b9ea4e121611a774...81c96a9ae150298738e96f599495f756b655cf5b#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -30,7 +30,7 @@ Build-Depends: debhelper-compat (= 13),</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> python3-pydot,</span>
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<td class="diff-line-num old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> nodejs,</span>
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<td class="diff-line-num new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> help2man</span>
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<td class="diff-line-num old old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">0</span></span>
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<td class="diff-line-num new old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">1</span></span>
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<td class="diff-line-num old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/cwltool</span>
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<td class="diff-line-num old_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/cwltool.git</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext">Homepage: https://www.commonwl.org</span>
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<li id="03c322cda16a58f0c1ef6d9450ddbe29663d974c">
<a href="https://salsa.debian.org/med-team/cwltool/-/compare/cd82d548c737f3f50aea5561b9ea4e121611a774...81c96a9ae150298738e96f599495f756b655cf5b#03c322cda16a58f0c1ef6d9450ddbe29663d974c"><strong>debian/patches/pytest6.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Abbreviated option names are no longer allowed in pytest 6</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/977067</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Last-Update Thu, 10 Dec 2020 22:06:24 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">--- a/PKG-INFO</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/PKG-INFO</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -609,7 +609,7 @@</span> Description: ===========================</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> .. code:: bash</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> pip install -rtest-requirements.txt</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- py.test --ignore cwltool/schemas/ --pyarg cwltool</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ py.test --ignore cwltool/schemas/ --pyargs cwltool</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> To run various tests in all supported Python environments we use `tox <https://github.com/common-workflow-language/cwltool/tree/main/tox.ini>`_. To run the test suite in all supported Python environments</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> first downloading the complete code repository (see the ``git clone`` instructions above) and then run</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/README.rst</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/README.rst</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="p">@@ -600,7 +600,7 @@</span> To run the basic tests after installing</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> .. code:: bash</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> pip install -rtest-requirements.txt</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- py.test --ignore cwltool/schemas/ --pyarg cwltool</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ py.test --ignore cwltool/schemas/ --pyargs cwltool</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> To run various tests in all supported Python environments we use `tox <https://github.com/common-workflow-language/cwltool/tree/main/tox.ini>`_. To run the test suite in all supported Python environments</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> first downloading the complete code repository (see the ``git clone`` instructions above) and then run</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/cwltool.egg-info/PKG-INFO</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/cwltool.egg-info/PKG-INFO</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="p">@@ -609,7 +609,7 @@</span> Description: ===========================</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> .. code:: bash</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> pip install -rtest-requirements.txt</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- py.test --ignore cwltool/schemas/ --pyarg cwltool</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ py.test --ignore cwltool/schemas/ --pyargs cwltool</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"> To run various tests in all supported Python environments we use `tox <https://github.com/common-workflow-language/cwltool/tree/main/tox.ini>`_. To run the test suite in all supported Python environments</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"> first downloading the complete code repository (see the ``git clone`` instructions above) and then run</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/cwltool/-/compare/cd82d548c737f3f50aea5561b9ea4e121611a774...81c96a9ae150298738e96f599495f756b655cf5b#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,3 +4,4 @@ disable_prov</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">python3</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">pytest</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">accept_newer_ruamel</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">pytest6.patch</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/cwltool/-/compare/cd82d548c737f3f50aea5561b9ea4e121611a774...81c96a9ae150298738e96f599495f756b655cf5b#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -35,5 +35,5 @@ ifeq (,$(filter nocheck,$(DEB_BUILD_PROFILES)))</td>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> PYBUILD_TEST_ARGS="cd {dir}; export PATH={destdir}/usr/bin:$$PATH ; \</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> cd {build_dir}; export PYTHONPATH=$$(pwd); {interpreter} -m pytest \</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> -k 'not test_http_path_mapping and not test_pack and not test_get_subgraph and not TestUdocker and not test_use_metadata and not test_load_graph_fragment_from_packed' \</span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> -n auto --dist=loadfile --ignore cwltool/schemas/ -s --pyarg cwltool" dh_auto_test</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> -n auto --dist=loadfile --ignore cwltool/schemas/ -s --pyarg<span class="idiff left right">s</span> cwltool" dh_auto_test</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext">endif</span></pre>
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<a href="https://salsa.debian.org/med-team/cwltool/-/compare/cd82d548c737f3f50aea5561b9ea4e121611a774...81c96a9ae150298738e96f599495f756b655cf5b#aab2726ed6daf419caf178b1480b6d7da8a85af6"><strong>debian/tests/run-tests</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,4 +15,4 @@ SKIPS=</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># SKIPS="-k 'not test_use_metadata'"</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># fi</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell">py.test-3 <span class="nt" style="color: #000080;">--numprocesses</span><span class="o" style="font-weight: 600;">=</span>auto <span class="nt" style="color: #000080;">--dist</span><span class="o" style="font-weight: 600;">=</span>loadfile <span class="nt" style="color: #000080;">--ignore</span><span class="o" style="font-weight: 600;">=</span>cwltool/schemas <span class="nt" style="color: #000080;">-s</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"> <span class="nt" style="color: #000080;">-k</span> <span class="s1" style="color: #d14;">'not TestUdocker and not test_use_metadata'</span> <span class="nt" style="color: #000080;">--pyarg</span> cwltool</span></pre>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell"> <span class="nt" style="color: #000080;">-k</span> <span class="s1" style="color: #d14;">'not TestUdocker and not test_use_metadata'</span> <span class="nt" style="color: #000080;">--pyarg<span class="idiff left right">s</span></span> cwltool</span></pre>
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