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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/infernal">Debian Med / infernal</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/infernal/-/commit/c1c63ac83d715e49f715bd37cbf9d012811602a1">c1c63ac8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-11T12:55:55+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">There are good reasons not to reproduce the Upstream documentation (see debian/README.source)
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#1a81aa218ceb4c11f7c78f284ad4df72c82baf09">
debian/infernal-doc.install
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/infernal/-/commit/c1c63ac83d715e49f715bd37cbf9d012811602a1#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,11 +7,11 @@ Priority: optional</td>
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 12),</span>
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> libperl4-corelibs-perl,</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> python3</span>
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Build-Depends-Indep: texlive-latex-recommended,</span>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
11
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> texlive-latex-extra,</span>
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<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> texlive-fonts-recommended,</span>
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<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> rman,</span>
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<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> hmmer-examples</span>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"><span class="idiff left right">#</span>Build-Depends-Indep: texlive-latex-recommended,</span>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"><span class="idiff left right">#</span> texlive-latex-extra,</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"><span class="idiff left right">#</span> texlive-fonts-recommended,</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"><span class="idiff left right">#</span> rman,</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"><span class="idiff left right">#</span> hmmer-examples</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Standards-Version: 4.5.0</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/infernal</span>
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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/infernal.git</span>
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<li id="1a81aa218ceb4c11f7c78f284ad4df72c82baf09">
<a href="https://salsa.debian.org/med-team/infernal/-/commit/c1c63ac83d715e49f715bd37cbf9d012811602a1#1a81aa218ceb4c11f7c78f284ad4df72c82baf09"><strong>debian/infernal-doc.install</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="n" style="color: #333;"><span class="idiff left">documentation</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">userguide</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">/</span></span><span class="nc" style="color: #458; font-weight: 600;">Userguide</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">pdf</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">infernal</span></span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nc" style="color: #458; font-weight: 600;">Userguide</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">pdf</span> <span class="n" style="color: #333;">usr</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">share</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">infernal</span></span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/infernal/-/commit/c1c63ac83d715e49f715bd37cbf9d012811602a1#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -29,7 +29,10 @@ override_dh_auto_configure-arch:</td>
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<td class="diff-line-num new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="make"><span class="nl">override_dh_auto_build-arch</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="make"> dh_auto_build <span class="nt" style="color: #000080;">-a</span> <span class="nt" style="color: #000080;">--</span> <span class="nv" style="color: #008080;">V</span><span class="o" style="font-weight: 600;">=</span>1</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="make"></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="make"><span class="nl">override_dh_auto_build-indep</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="make"><span class="nl">override_dh_auto_build-indep_see_debian_README.source</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="make"> <span class="c" style="color: #998; font-style: italic;"># Besides the reasons given in README.source this target can not </span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="make"> <span class="c" style="color: #998; font-style: italic;"># fully reproduce the Userguide.pdf since master.bib is not available</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="make"> <span class="c" style="color: #998; font-style: italic;"># Thus the References section will remain empty</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="make"> <span class="nb" style="color: #0086b3;">cd </span>documentation/userguide <span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="make"> <span class="nb" style="color: #0086b3;">sed</span> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/@INFERNAL_VERSION@/</span><span class="nv" style="color: #008080;">$(DEB_VERSION_UPSTREAM)</span><span class="s1" style="color: #d14;">/'</span> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/@INFERNAL_DATE@/</span><span class="nv" style="color: #008080;">$(DATE)</span><span class="s1" style="color: #d14;">/'</span> titlepage.tex.in <span class="o" style="font-weight: 600;">></span> titlepage.tex <span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="make"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">" LATEX Userguide.pdf (see latex.log for output)"</span> <span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -48,6 +51,7 @@ override_dh_auto_install-arch:</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="make"> <span class="nv" style="color: #008080;">$(MAKE)</span> <span class="nb" style="color: #0086b3;">install</span> <span class="nt" style="color: #000080;">-j</span><span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">shell</span> <span class="nb" style="color: #0086b3;">nproc</span><span class="nf" style="color: #900; font-weight: 600;">)</span> <span class="nv" style="color: #008080;">AM_UPDATE_INFO_DIR</span><span class="o" style="font-weight: 600;">=</span>no <span class="nv" style="color: #008080;">V</span><span class="o" style="font-weight: 600;">=</span>1 <span class="nv" style="color: #008080;">prefix</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$(CURDIR)</span>/debian/tmp</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="make"><span class="nl">override_dh_auto_configure-indep</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="make"><span class="nl">override_dh_auto_build-indep</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="make"><span class="nl">override_dh_auto_install-indep</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="make"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Nothing to do for architecture all binary packages"</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="make"></span>
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